mRNA_M-pyrifera_M_contig100724.161.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100724.161.1
Unique NamemRNA_M-pyrifera_M_contig100724.161.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100724.161.1 vs. uniprot
Match: UPI001D982174 (ankyrin repeat-containing domain protein n=1 Tax=Microdochium trichocladiopsis TaxID=1682393 RepID=UPI001D982174)

HSP 1 Score: 57.4 bits (137), Expect = 2.200e-7
Identity = 36/110 (32.73%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:    1 LHVACTMDNVEVVRLVAPRLSEEQLTARDNQGNTPLISAAAEGSTEAARMLLEYLPCESLNMENKAGVNAFIRACKGEHSVFVRLLATRLPQGE---LCKCDDAGNTAIH 321
            LH+A +M +V+V R++     EE   A +    T L  AAA G T     L E  P E +   +  G ++ + A +G H   ++LL T +P G    +   D  GNTA+H
Sbjct:   46 LHLAASMGHVDVARVLVSLGHEEPTPALNENHQTALALAAANGHTNVVHFLAERFP-ECILRRDSKGRDSIMEASRGGHDTVLQLLLTYVPDGHEAAVRNADIDGNTALH 154
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BLAST of mRNA_M-pyrifera_M_contig100724.161.1 vs. uniprot
Match: A0A6A6VBQ6_9PLEO (Ankyrin n=1 Tax=Sporormia fimetaria CBS 119925 TaxID=1340428 RepID=A0A6A6VBQ6_9PLEO)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-6
Identity = 35/115 (30.43%), Postives = 63/115 (54.78%), Query Frame = 1 
Query:    1 LHVACTMDNVEVVRLVAPRLSEEQLTARDNQGNTPLISAAAEGSTEAARMLLEYLPCESLNMENKAGVNAFIRACK-GEHSVFVRLLATRLPQGELCKCDDAGNTAIHAMATAGE 342
            LH+A     +++   +  +  + +  +++N   TPL+ AA  G  + + ML +  P  S++++NKAG++A + ACK G  ++ +      L    L   D+AGNTA+H  + AGE
Sbjct:   44 LHLAARHGFMQIAEYLIEQGHDSEFISQNNDCETPLMLAATSGREDMSVMLAKRFP-SSISLQNKAGLDALMIACKSGIGTLHLIPTLLNLHPSLLHAHDNAGNTALHHASAAGE 157
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100724.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001D9821742.200e-732.73ankyrin repeat-containing domain protein n=1 Tax=M... [more]
A0A6A6VBQ6_9PLEO1.120e-630.43Ankyrin n=1 Tax=Sporormia fimetaria CBS 119925 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100724contigM-pyrifera_M_contig100724:309..674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.4903104-CDS-M-pyrifera_M_contig100724:308..6561622815504.4903104-CDS-M-pyrifera_M_contig100724:308..656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100724 309..656 -
1692277441.2063003-CDS-M-pyrifera_M_contig100724:308..6561692277441.2063003-CDS-M-pyrifera_M_contig100724:308..656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100724 309..656 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.510403-UTR-M-pyrifera_M_contig100724:656..6741622815504.510403-UTR-M-pyrifera_M_contig100724:656..674Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100724 657..674 -
1692277441.2233799-UTR-M-pyrifera_M_contig100724:656..6741692277441.2233799-UTR-M-pyrifera_M_contig100724:656..674Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100724 657..674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100724.161.1prot_M-pyrifera_M_contig100724.161.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100724 309..656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100724.161.1

>prot_M-pyrifera_M_contig100724.161.1 ID=prot_M-pyrifera_M_contig100724.161.1|Name=mRNA_M-pyrifera_M_contig100724.161.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MDNVEVVRLVAPRLSEEQLTARDNQGNTPLISAAAEGSTEAARMLLEYLP
CESLNMENKAGVNAFIRACKGEHSVFVRLLATRLPQGELCKCDDAGNTAI
HAMATAGEEAIACMLV
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mRNA from alignment at M-pyrifera_M_contig100724:309..674-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100724.161.1 ID=mRNA_M-pyrifera_M_contig100724.161.1|Name=mRNA_M-pyrifera_M_contig100724.161.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig100724:309..674- (Macrocystis pyrifera P11B4 male)
CTCCATGTGGCCTGCACGATGGACAACGTTGAGGTCGTGAGGTTGGTGGC
CCCTCGGCTCTCTGAGGAGCAGTTGACTGCAAGAGACAACCAAGGCAACA
CTCCTCTGATCTCTGCCGCTGCTGAGGGATCCACAGAGGCAGCGAGGATG
CTCCTCGAGTACCTCCCCTGCGAGAGTCTCAACATGGAGAACAAAGCTGG
CGTCAATGCCTTCATTAGAGCCTGTAAGGGCGAGCACTCTGTGTTCGTCC
GCCTCCTCGCCACTCGTCTGCCTCAAGGAGAGCTGTGCAAGTGCGACGAC
GCTGGAAACACAGCCATCCACGCCATGGCAACAGCTGGAGAGGAGGCAAT
CGCATGCATGTTGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100724:309..674-

>mRNA_M-pyrifera_M_contig100724.161.1 ID=mRNA_M-pyrifera_M_contig100724.161.1|Name=mRNA_M-pyrifera_M_contig100724.161.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig100724:309..674- (Macrocystis pyrifera P11B4 male)
ATGGACAACGTTGAGGTCGTGAGGTTGGTGGCCCCTCGGCTCTCTGAGGA
GCAGTTGACTGCAAGAGACAACCAAGGCAACACTCCTCTGATCTCTGCCG
CTGCTGAGGGATCCACAGAGGCAGCGAGGATGCTCCTCGAGTACCTCCCC
TGCGAGAGTCTCAACATGGAGAACAAAGCTGGCGTCAATGCCTTCATTAG
AGCCTGTAAGGGCGAGCACTCTGTGTTCGTCCGCCTCCTCGCCACTCGTC
TGCCTCAAGGAGAGCTGTGCAAGTGCGACGACGCTGGAAACACAGCCATC
CACGCCATGGCAACAGCTGGAGAGGAGGCAATCGCATGCATGTTGGTGAT
GGACAACGTTGAGGTCGTGAGGTTGGTGGCCCCTCGGCTCTCTGAGGAGC
AGTTGACTGCAAGAGACAACCAAGGCAACACTCCTCTGATCTCTGCCGCT
GCTGAGGGATCCACAGAGGCAGCGAGGATGCTCCTCGAGTACCTCCCCTG
CGAGAGTCTCAACATGGAGAACAAAGCTGGCGTCAATGCCTTCATTAGAG
CCTGTAAGGGCGAGCACTCTGTGTTCGTCCGCCTCCTCGCCACTCGTCTG
CCTCAAGGAGAGCTGTGCAAGTGCGACGACGCTGGAAACACAGCCATCCA
CGCCATGGCAACAGCTGGAGAGGAGGCAATCGCATGCATGTTGGTG
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