prot_M-pyrifera_M_contig6628.16083.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig6628.16083.1
Unique Nameprot_M-pyrifera_M_contig6628.16083.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length719
Homology
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BLAST of mRNA_M-pyrifera_M_contig6628.16083.1 vs. uniprot
Match: D7FTF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF1_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 6.000e-25
Identity = 69/136 (50.74%), Postives = 85/136 (62.50%), Query Frame = 0 
Query:  558 SACFGGAEWSS---IEQMLDRMHACAANYASALDSPSCTSDSNPEGGPVPTRSDKGSD-EWGP-GRGEAGIVQAYNYVIRTCGKAGGSEMALDFIQQMHKRGIAPDAASYSGAIVACDLSGMWEQAVALLGDMRDK 688
            SAC     W     +  +LD MHAC A    A + P        EGG    R   G D +WGP G   +G+VQAYN+VIR CG AGG+E  L  +Q+MH+RG+ PDAASYSGAI+ACDL+GMW +AV LL DMR+K
Sbjct:   38 SACGKAGRWEEAVGLLDILDLMHACEARAQPADNPPGINGAL--EGG----RESVGGDADWGPDGGSSSGLVQAYNHVIRACGAAGGTEFVLALLQEMHRRGVPPDAASYSGAIIACDLAGMWREAVGLLDDMREK 167
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BLAST of mRNA_M-pyrifera_M_contig6628.16083.1 vs. uniprot
Match: A0A6H5J961_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J961_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.890e-22
Identity = 63/119 (52.94%), Postives = 78/119 (65.55%), Query Frame = 0 
Query:  572 MLDRMHACAANYASALDSPSCTSDSNPEGGPVPTRSDKGSD-EWGP-GRGEAGIVQAYNYVIRTCGKAGGSEMALDFIQQMHKRGIAPDAASYSGAIVACDLSGMWEQAVALLGDMRDK 688
            +LD MHACAA+   A + P        EGG    R   G D  WG  G   +G+VQAYN+VIR CG AGG+E  L  +Q+MH+RG+ PDAASYSG I+ACDL+GMW +AV LL DMR +
Sbjct:   83 VLDLMHACAASAQPADNPPGFNR--TLEGG----RESVGGDAHWGADGGSSSGLVQAYNHVIRACGAAGGAEFVLALLQEMHRRGVPPDAASYSGGIIACDLAGMWREAVGLLDDMRQE 195
[Close]
BLAST of mRNA_M-pyrifera_M_contig6628.16083.1 vs. uniprot
Match: A0A6H5J994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J994_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.020e-10
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 0 
Query:    2 QAISMCGRQGLWKEAVFLLRDAQ--AAPRARRGVDVVTYSAAIXXXXXXXXXXXXXXXXXXMQATGIKADQI 71
            QAIS+CGRQG W++A+FLLRDAQ  ++P   RGVDVVTYSAA+                  MQA GIK DQI
Sbjct:    9 QAISLCGRQGGWEDAIFLLRDAQRLSSPGQLRGVDVVTYSAAVAACRDGGQWRQALALMEEMQAAGIKPDQI 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig6628.16083.1 vs. uniprot
Match: D7FTF0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF0_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.880e-9
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 0 
Query:    2 QAISMCGRQGLWKEAVFLLRDAQ--AAPRARRGVDVVTYSAAIXXXXXXXXXXXXXXXXXXMQATGIKADQI 71
            +AIS+CGRQG W++AVFLLRDAQ  ++P  RRGVDVVT+SAA+                  MQA GIK DQI
Sbjct:  107 KAISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALMEEMQAAGIKPDQI 178
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6628.16083.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTF1_ECTSI6.000e-2550.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J961_9PHAE3.890e-2252.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J994_9PHAE4.020e-1054.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTF0_ECTSI1.880e-954.17PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 268..318
e-value: 0.0054
score: 16.8
coord: 648..706
e-value: 2.2E-4
score: 21.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 411..451
e-value: 5.0E-8
score: 33.0
coord: 348..386
e-value: 1.7E-7
score: 31.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 72..105
e-value: 6.7E-5
score: 20.8
coord: 178..202
e-value: 0.0022
score: 16.0
coord: 343..376
e-value: 3.0E-7
score: 28.2
coord: 414..447
e-value: 7.3E-9
score: 33.3
coord: 309..341
e-value: 1.9E-4
score: 19.4
coord: 141..175
e-value: 6.9E-7
score: 27.1
coord: 696..718
e-value: 0.0013
score: 16.7
coord: 36..69
e-value: 3.3E-5
score: 21.8
coord: 107..139
e-value: 4.9E-7
score: 27.5
coord: 626..659
e-value: 4.3E-6
score: 24.6
coord: 272..305
e-value: 2.2E-4
score: 19.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 270..304
score: 10.534
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 69..103
score: 10.545
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..405
score: 8.331
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 694..719
score: 8.659
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 305..339
score: 10.424
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 139..173
score: 11.411
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 34..68
score: 10.874
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 623..657
score: 9.854
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 340..374
score: 11.707
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 174..208
score: 8.714
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 658..693
score: 7.596
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 104..138
score: 12.627
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 411..445
score: 12.573
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 38..215
e-value: 2.2E-14
score: 53.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..114
e-value: 1.6E-26
score: 94.7
coord: 386..461
e-value: 1.0E-16
score: 62.8
coord: 115..213
e-value: 3.1E-25
score: 90.6
coord: 264..385
e-value: 4.1E-31
score: 109.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 617..719
e-value: 4.9E-23
score: 84.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 268..454
coord: 625..718
coord: 34..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6628contigM-pyrifera_M_contig6628:198..13357 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6628.16083.1mRNA_M-pyrifera_M_contig6628.16083.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig6628 198..13357 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig6628.16083.1 ID=prot_M-pyrifera_M_contig6628.16083.1|Name=mRNA_M-pyrifera_M_contig6628.16083.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=719bp
MQAISMCGRQGLWKEAVFLLRDAQAAPRARRGVDVVTYSAAIAACRNGGE
WKQALSLMEEMQATGIKADQIAFGTAVSACAMGGQWERARALLAEMRRSN
LRPDVIAYSSAVKACGIDGRWEEALELLTEMQESGVRPNLITYTGAMEAC
GRAGKWKKALSLLSQVRDQGIQPDAFALNAVMDALARAGETEMALALLDT
MRPARRPVSTSSTPIARADPADRSPSGSPSMNVKDVDAGGGSGGGRGGGG
VGRELGQGRPDKRGSGPRADVFTWSGAMTACIEGGCWERVVEMLEDMRGD
GVPPNLINFNLAVKALGKGGDWERATRILGDMKSGGVNPDERTFSAAIEA
CGRGGCWERAVSLMDDMRREGLAPDELTYSTVIAACDRAGAWDVALMMLD
EAREQDGEGANVFAYTSAISACGKAGQWEKAVSLLDVMREEGVLPNAITL
RSALLALENAPPPPLETWRQAAPILRSSEAVSEEKKTVPPHASDSKDSQN
LSVGVRAGTEKKRNRGWVGSSPPLPWEVAFSLLENMADGVLEEKVFPGPR
DFSAGLTSACFGGAEWSSIEQMLDRMHACAANYASALDSPSCTSDSNPEG
GPVPTRSDKGSDEWGPGRGEAGIVQAYNYVIRTCGKAGGSEMALDFIQQM
HKRGIAPDAASYSGAIVACDLSGMWEQAVALLGDMRDKAGVEPDLVCYNC
AIKACGSSGEWEEALSIVQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf