prot_M-pyrifera_M_contig66131.16054.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig66131.16054.1
Unique Nameprot_M-pyrifera_M_contig66131.16054.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length54
Homology
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A3N5LVS0_9BACT (30S ribosomal protein S18 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5LVS0_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 6.850e-11
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    5 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 50
            +T+LL  FV    RILPRR SG C THQ KL+  IKRARHL LLPY
Sbjct:   22 DTRLLGQFVPERARILPRRISGVCATHQRKLALAIKRARHLALLPY 67          
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A3N5NVK3_9BACT (30S ribosomal protein S18 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5NVK3_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 7.410e-10
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 0
Query:    5 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 50
            + KLL  FV   G+ILPRR SGTC THQ KL   IKRAR L L+PY
Sbjct:   48 DVKLLGPFVPERGKILPRRISGTCATHQRKLQTAIKRARQLALIPY 93          
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A7V5VDD4_9BACT (30S ribosomal protein S18 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V5VDD4_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 2.460e-9
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 0
Query:    7 KLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 50
            K+LS F    G+I+PRR SG C  HQH L+R IKRARHL L+P+
Sbjct:   24 KVLSRFTTEQGKIIPRRTSGNCARHQHMLTRAIKRARHLALIPF 67          
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A661KBS5_9DELT (30S ribosomal protein S18 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661KBS5_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 3.050e-9
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0
Query:    5 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPYHS 52
            N +LL  F+   G+ILPRR SG C  HQ +L+R IKRARH+ LLP+ S
Sbjct:   32 NYRLLKYFLTERGKILPRRISGNCAKHQRELTRAIKRARHVALLPFTS 79          
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A8J6N963_9DELT (30S ribosomal protein S18 n=1 Tax=Candidatus Desulfatifera sulfidica TaxID=2841691 RepID=A0A8J6N963_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 4.220e-9
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0
Query:    5 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 50
            +TK L  F+   G+I+PRR SGTC THQ +L   IKRAR + LLPY
Sbjct:   30 DTKQLRYFISERGKIMPRRISGTCATHQRQLCEAIKRARQIALLPY 75          
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A1Q7YFZ2_9BACT (30S ribosomal protein S18 n=1 Tax=Acidobacteria bacterium 13_1_20CM_3_53_8 TaxID=1803431 RepID=A0A1Q7YFZ2_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 4.500e-9
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    5 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 50
            + KLL  +V   G+ILPRR SGTC THQ  L+  IKRAR++ LLPY
Sbjct:   21 DVKLLQGYVPERGKILPRRISGTCATHQRMLAEAIKRARNIALLPY 66          
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A1F9CR13_9DELT (30S ribosomal protein S18 n=1 Tax=Deltaproteobacteria bacterium RBG_16_54_11 TaxID=1797842 RepID=A0A1F9CR13_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 4.990e-9
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    5 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 50
            N +LL  F+   GRI+PRR SG C  HQ +L+R IKRARH+ LLP+
Sbjct:   38 NYRLLRSFITERGRIIPRRISGNCAKHQRELTREIKRARHVALLPF 83          
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: S7TPS9_DESML (30S ribosomal protein S18 n=1 Tax=Desulfococcus multivorans DSM 2059 TaxID=1121405 RepID=S7TPS9_DESML)

HSP 1 Score: 56.2 bits (134), Expect = 5.230e-9
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 0
Query:    7 KLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 50
            K L +F    G+I+PRR SGTC THQ KL+ +IKRAR + LLPY
Sbjct:   41 KTLRMFTTERGKIIPRRISGTCATHQRKLTESIKRARSIALLPY 84          
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A7C5MIE9_9BACT (30S ribosomal protein S18 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C5MIE9_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 5.450e-9
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0
Query:    5 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 50
            + KLL  F+   G+ILPRR SG C THQ  L+  IKRARHL +LP+
Sbjct:   29 DAKLLGHFIPERGKILPRRISGVCSTHQRLLAEAIKRARHLAILPF 74          
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A3D5L0S1_9FIRM (30S ribosomal protein S18 n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A3D5L0S1_9FIRM)

HSP 1 Score: 55.8 bits (133), Expect = 6.740e-9
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 0
Query:    9 LSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPYHSK 53
            L  ++   G+ILPRR +GTC THQ +L+  IKRARHL +LPY  K
Sbjct:   42 LRKYISEGGKILPRRITGTCATHQRELTTAIKRARHLAILPYSEK 86          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N5LVS0_9BACT6.850e-1165.2230S ribosomal protein S18 n=1 Tax=Acidobacteria ba... [more]
A0A3N5NVK3_9BACT7.410e-1063.0430S ribosomal protein S18 n=1 Tax=Acidobacteria ba... [more]
A0A7V5VDD4_9BACT2.460e-959.0930S ribosomal protein S18 n=1 Tax=Bacteroidetes ba... [more]
A0A661KBS5_9DELT3.050e-956.2530S ribosomal protein S18 n=1 Tax=Deltaproteobacte... [more]
A0A8J6N963_9DELT4.220e-956.5230S ribosomal protein S18 n=1 Tax=Candidatus Desul... [more]
A0A1Q7YFZ2_9BACT4.500e-958.7030S ribosomal protein S18 n=1 Tax=Acidobacteria ba... [more]
A0A1F9CR13_9DELT4.990e-956.5230S ribosomal protein S18 n=1 Tax=Deltaproteobacte... [more]
S7TPS9_DESML5.230e-959.0930S ribosomal protein S18 n=1 Tax=Desulfococcus mu... [more]
A0A7C5MIE9_9BACT5.450e-956.5230S ribosomal protein S18 n=1 Tax=Acidobacteria ba... [more]
A0A3D5L0S1_9FIRM6.740e-955.5630S ribosomal protein S18 n=1 Tax=Lachnospiraceae ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001648Ribosomal protein S18PRINTSPR00974RIBOSOMALS18coord: 8..18
score: 29.75
coord: 26..40
score: 29.9
coord: 18..25
score: 50.0
coord: 40..50
score: 65.84
IPR001648Ribosomal protein S18PFAMPF01084Ribosomal_S18coord: 5..48
e-value: 1.6E-16
score: 60.2
IPR001648Ribosomal protein S18TIGRFAMTIGR00165TIGR00165coord: 6..52
e-value: 2.1E-14
score: 51.5
IPR036870Ribosomal protein S18 superfamilyGENE3D4.10.640.10coord: 5..54
e-value: 8.3E-19
score: 69.1
IPR036870Ribosomal protein S18 superfamilySUPERFAMILY46911Ribosomal protein S18coord: 5..53
NoneNo IPR availablePANTHERPTHR1347930S RIBOSOMAL PROTEIN S18coord: 4..52
NoneNo IPR availablePANTHERPTHR13479:SF4028S RIBOSOMAL PROTEIN S18C, MITOCHONDRIALcoord: 4..52
NoneNo IPR availablePRODOMPD002239coord: 5..50
e-value: 5.0E-8
score: 131.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66131contigM-pyrifera_M_contig66131:450..611 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66131.16054.1mRNA_M-pyrifera_M_contig66131.16054.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig66131 450..611 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig66131.16054.1 ID=prot_M-pyrifera_M_contig66131.16054.1|Name=mRNA_M-pyrifera_M_contig66131.16054.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MREDNTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY
HSKL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001648Ribosomal_S18
IPR036870Ribosomal_S18_sf