mRNA_M-pyrifera_M_contig66131.16054.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66131.16054.1
Unique NamemRNA_M-pyrifera_M_contig66131.16054.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A3N5LVS0_9BACT (30S ribosomal protein S18 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5LVS0_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 6.850e-11
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   13 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 150
            +T+LL  FV    RILPRR SG C THQ KL+  IKRARHL LLPY
Sbjct:   22 DTRLLGQFVPERARILPRRISGVCATHQRKLALAIKRARHLALLPY 67
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BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A3N5NVK3_9BACT (30S ribosomal protein S18 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5NVK3_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 7.410e-10
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   13 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 150
            + KLL  FV   G+ILPRR SGTC THQ KL   IKRAR L L+PY
Sbjct:   48 DVKLLGPFVPERGKILPRRISGTCATHQRKLQTAIKRARQLALIPY 93
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BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A7V5VDD4_9BACT (30S ribosomal protein S18 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V5VDD4_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 2.460e-9
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   19 KLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 150
            K+LS F    G+I+PRR SG C  HQH L+R IKRARHL L+P+
Sbjct:   24 KVLSRFTTEQGKIIPRRTSGNCARHQHMLTRAIKRARHLALIPF 67
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BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A661KBS5_9DELT (30S ribosomal protein S18 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661KBS5_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 3.050e-9
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   13 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPYHS 156
            N +LL  F+   G+ILPRR SG C  HQ +L+R IKRARH+ LLP+ S
Sbjct:   32 NYRLLKYFLTERGKILPRRISGNCAKHQRELTRAIKRARHVALLPFTS 79
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BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A8J6N963_9DELT (30S ribosomal protein S18 n=1 Tax=Candidatus Desulfatifera sulfidica TaxID=2841691 RepID=A0A8J6N963_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 4.220e-9
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   13 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 150
            +TK L  F+   G+I+PRR SGTC THQ +L   IKRAR + LLPY
Sbjct:   30 DTKQLRYFISERGKIMPRRISGTCATHQRQLCEAIKRARQIALLPY 75
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BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A1Q7YFZ2_9BACT (30S ribosomal protein S18 n=1 Tax=Acidobacteria bacterium 13_1_20CM_3_53_8 TaxID=1803431 RepID=A0A1Q7YFZ2_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 4.500e-9
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   13 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 150
            + KLL  +V   G+ILPRR SGTC THQ  L+  IKRAR++ LLPY
Sbjct:   21 DVKLLQGYVPERGKILPRRISGTCATHQRMLAEAIKRARNIALLPY 66
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BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A1F9CR13_9DELT (30S ribosomal protein S18 n=1 Tax=Deltaproteobacteria bacterium RBG_16_54_11 TaxID=1797842 RepID=A0A1F9CR13_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 4.990e-9
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   13 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 150
            N +LL  F+   GRI+PRR SG C  HQ +L+R IKRARH+ LLP+
Sbjct:   38 NYRLLRSFITERGRIIPRRISGNCAKHQRELTREIKRARHVALLPF 83
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BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: S7TPS9_DESML (30S ribosomal protein S18 n=1 Tax=Desulfococcus multivorans DSM 2059 TaxID=1121405 RepID=S7TPS9_DESML)

HSP 1 Score: 56.2 bits (134), Expect = 5.230e-9
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   19 KLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 150
            K L +F    G+I+PRR SGTC THQ KL+ +IKRAR + LLPY
Sbjct:   41 KTLRMFTTERGKIIPRRISGTCATHQRKLTESIKRARSIALLPY 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A7C5MIE9_9BACT (30S ribosomal protein S18 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C5MIE9_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 5.450e-9
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   13 NTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY 150
            + KLL  F+   G+ILPRR SG C THQ  L+  IKRARHL +LP+
Sbjct:   29 DAKLLGHFIPERGKILPRRISGVCSTHQRLLAEAIKRARHLAILPF 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Match: A0A3D5L0S1_9FIRM (30S ribosomal protein S18 n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A3D5L0S1_9FIRM)

HSP 1 Score: 55.8 bits (133), Expect = 6.740e-9
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   25 LSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPYHSK 159
            L  ++   G+ILPRR +GTC THQ +L+  IKRARHL +LPY  K
Sbjct:   42 LRKYISEGGKILPRRITGTCATHQRELTTAIKRARHLAILPYSEK 86
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66131.16054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N5LVS0_9BACT6.850e-1165.2230S ribosomal protein S18 n=1 Tax=Acidobacteria ba... [more]
A0A3N5NVK3_9BACT7.410e-1063.0430S ribosomal protein S18 n=1 Tax=Acidobacteria ba... [more]
A0A7V5VDD4_9BACT2.460e-959.0930S ribosomal protein S18 n=1 Tax=Bacteroidetes ba... [more]
A0A661KBS5_9DELT3.050e-956.2530S ribosomal protein S18 n=1 Tax=Deltaproteobacte... [more]
A0A8J6N963_9DELT4.220e-956.5230S ribosomal protein S18 n=1 Tax=Candidatus Desul... [more]
A0A1Q7YFZ2_9BACT4.500e-958.7030S ribosomal protein S18 n=1 Tax=Acidobacteria ba... [more]
A0A1F9CR13_9DELT4.990e-956.5230S ribosomal protein S18 n=1 Tax=Deltaproteobacte... [more]
S7TPS9_DESML5.230e-959.0930S ribosomal protein S18 n=1 Tax=Desulfococcus mu... [more]
A0A7C5MIE9_9BACT5.450e-956.5230S ribosomal protein S18 n=1 Tax=Acidobacteria ba... [more]
A0A3D5L0S1_9FIRM6.740e-955.5630S ribosomal protein S18 n=1 Tax=Lachnospiraceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66131contigM-pyrifera_M_contig66131:450..611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816550.7931433-CDS-M-pyrifera_M_contig66131:449..6111622816550.7931433-CDS-M-pyrifera_M_contig66131:449..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66131 450..611 +
1692278041.6031656-CDS-M-pyrifera_M_contig66131:449..6111692278041.6031656-CDS-M-pyrifera_M_contig66131:449..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66131 450..611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66131.16054.1prot_M-pyrifera_M_contig66131.16054.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66131 450..611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66131.16054.1

>prot_M-pyrifera_M_contig66131.16054.1 ID=prot_M-pyrifera_M_contig66131.16054.1|Name=mRNA_M-pyrifera_M_contig66131.16054.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MREDNTKLLSLFVDTAGRILPRRFSGTCRTHQHKLSRTIKRARHLLLLPY
HSKL
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mRNA from alignment at M-pyrifera_M_contig66131:450..611+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66131.16054.1 ID=mRNA_M-pyrifera_M_contig66131.16054.1|Name=mRNA_M-pyrifera_M_contig66131.16054.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig66131:450..611+ (Macrocystis pyrifera P11B4 male)
ATGCGAGAAGACAACACAAAGCTTCTCTCGCTCTTCGTTGACACTGCAGG
ACGAATCTTACCCAGACGCTTCTCTGGCACATGTCGTACTCACCAACACA
AACTCTCTCGCACCATCAAACGTGCAAGACATCTCCTCCTCCTCCCATAC
CACTCCAAACTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66131:450..611+

>mRNA_M-pyrifera_M_contig66131.16054.1 ID=mRNA_M-pyrifera_M_contig66131.16054.1|Name=mRNA_M-pyrifera_M_contig66131.16054.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig66131:450..611+ (Macrocystis pyrifera P11B4 male)
ATGCGAGAAGACAACACAAAGCTTCTCTCGCTCTTCGTTGACACTGCAGG
ACGAATCTTACCCAGACGCTTCTCTGGCACATGTCGTACTCACCAACACA
AACTCTCTCGCACCATCAAACGTGCAAGACATCTCCTCCTCCTCCCATAC
CACTCCAAACTTATGCGAGAAGACAACACAAAGCTTCTCTCGCTCTTCGT
TGACACTGCAGGACGAATCTTACCCAGACGCTTCTCTGGCACATGTCGTA
CTCACCAACACAAACTCTCTCGCACCATCAAACGTGCAAGACATCTCCTC
CTCCTCCCATACCACTCCAAACTT
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