mRNA_M-pyrifera_M_contig66087.16043.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66087.16043.1
Unique NamemRNA_M-pyrifera_M_contig66087.16043.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66087.16043.1 vs. uniprot
Match: A0A6H5K5F4_9PHAE (AAA_16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.670e-16
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 PTVLVTGPPCCGKTGVVTGLLENRGCSYVYVNCSEIVSLRSLMEAVLEQVADG 159
            P +LVTGPPC GKT VV  +L++RGCSY YVNC+E+V  R L+EA++EQVA G
Sbjct:   91 PPLLVTGPPCTGKTSVVRAVLDHRGCSYAYVNCAEVVQRRDLLEALVEQVAGG 143
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BLAST of mRNA_M-pyrifera_M_contig66087.16043.1 vs. uniprot
Match: D7FZ80_ECTSI (Putative Mn/Fe superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ80_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.210e-15
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 PTVLVTGPPCCGKTGVVTGLLENRGCSYVYVNCSEIVSLRSLMEAVLEQVADG 159
            P +LVTGPPC GKT VV  +L++RGCSY YVNC+E+V  R L+E ++EQVA G
Sbjct:  135 PPLLVTGPPCTGKTSVVRAVLDHRGCSYAYVNCAEVVQRRDLLEVLVEQVAGG 187
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BLAST of mRNA_M-pyrifera_M_contig66087.16043.1 vs. uniprot
Match: A0A836CAU5_9STRA (Origin recognition complex subunit 5 C-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.190e-8
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    7 VLVTGPPCCGKTGVVTGLLENRGCSYVYVNCSEIVSLRSLMEAVLEQVADG 159
            ++V GPPC GK+G +  +LE   C Y  V+C + +SLR LM+AV+EQ+   
Sbjct:  118 IIVQGPPCTGKSGAIRDVLEESSCPYTLVDCKQALSLRQLMQAVVEQLVSS 168
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66087.16043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K5F4_9PHAE1.670e-1664.15AAA_16 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FZ80_ECTSI2.210e-1562.26Putative Mn/Fe superoxide dismutase n=1 Tax=Ectoca... [more]
A0A836CAU5_9STRA1.190e-845.10Origin recognition complex subunit 5 C-terminus-do... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66087contigM-pyrifera_M_contig66087:376..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816550.0171804-CDS-M-pyrifera_M_contig66087:375..5341622816550.0171804-CDS-M-pyrifera_M_contig66087:375..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66087 376..534 +
1692278041.1447814-CDS-M-pyrifera_M_contig66087:375..5341692278041.1447814-CDS-M-pyrifera_M_contig66087:375..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66087 376..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66087.16043.1prot_M-pyrifera_M_contig66087.16043.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66087 376..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66087.16043.1

>prot_M-pyrifera_M_contig66087.16043.1 ID=prot_M-pyrifera_M_contig66087.16043.1|Name=mRNA_M-pyrifera_M_contig66087.16043.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
PTVLVTGPPCCGKTGVVTGLLENRGCSYVYVNCSEIVSLRSLMEAVLEQV
ADG
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mRNA from alignment at M-pyrifera_M_contig66087:376..534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66087.16043.1 ID=mRNA_M-pyrifera_M_contig66087.16043.1|Name=mRNA_M-pyrifera_M_contig66087.16043.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig66087:376..534+ (Macrocystis pyrifera P11B4 male)
CCCACCGTTCTCGTCACCGGTCCTCCTTGCTGCGGCAAGACTGGGGTGGT
GACGGGTTTGCTGGAGAACAGAGGCTGTTCCTACGTGTACGTTAACTGTT
CGGAGATTGTTAGCCTCCGGTCGCTAATGGAAGCTGTGCTGGAGCAAGTA
GCGGACGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66087:376..534+

>mRNA_M-pyrifera_M_contig66087.16043.1 ID=mRNA_M-pyrifera_M_contig66087.16043.1|Name=mRNA_M-pyrifera_M_contig66087.16043.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig66087:376..534+ (Macrocystis pyrifera P11B4 male)
CCCACCGTTCTCGTCACCGGTCCTCCTTGCTGCGGCAAGACTGGGGTGGT
GACGGGTTTGCTGGAGAACAGAGGCTGTTCCTACGTGTACGTTAACTGTT
CGGAGATTGTTAGCCTCCGGTCGCTAATGGAAGCTGTGCTGGAGCAAGTA
GCGGACGGACCCACCGTTCTCGTCACCGGTCCTCCTTGCTGCGGCAAGAC
TGGGGTGGTGACGGGTTTGCTGGAGAACAGAGGCTGTTCCTACGTGTACG
TTAACTGTTCGGAGATTGTTAGCCTCCGGTCGCTAATGGAAGCTGTGCTG
GAGCAAGTAGCGGACGGA
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