mRNA_M-pyrifera_M_contig65929.16008.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65929.16008.1
Unique NamemRNA_M-pyrifera_M_contig65929.16008.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65929.16008.1 vs. uniprot
Match: D8LE71_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE71_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 2.090e-33
Identity = 89/156 (57.05%), Postives = 100/156 (64.10%), Query Frame = 1 
Query:    1 HLRKIADLRKMAAVAE---ASVPDVAEGNADAAAGRAE-----GSRPPATDE------GNANDNDGXXXXXXXXXXXXXXXXXVEVVLARLLTDTLASLTRAFEKGALIAGEISGACVISGLYCDGALVLANVGDCQALYHGQVKSSPGTAVTAQT 426
            HLRK  D R  AA A+   ++    A+GNADA AG+ +      S PP  D       G+ NDN                   VEVVLARLLTDTLASLTR FE+ AL  GEISGACVISGLYC+GALVLANVGDCQA+YHGQVKS+PG AVTAQT
Sbjct:  168 HLRKTVDTRYNAANAKTTHSTTTRQAQGNADAGAGKLKXXXXXASEPPRKDGSVGHGGGDGNDN--------ADVPPRKLSPSVEVVLARLLTDTLASLTREFEEEALEIGEISGACVISGLYCEGALVLANVGDCQAVYHGQVKSAPGDAVTAQT 315
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65929.16008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE71_ECTSI2.090e-3357.05PPM-type phosphatase domain-containing protein n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65929contigM-pyrifera_M_contig65929:120..1071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.6e-27
Seed eggNOG ortholog2880.D8LE71
KEGG koko:K01090,ko:K14803
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03009
Exons2
Model size426
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65929.16008.1prot_M-pyrifera_M_contig65929.16008.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65929 150..1071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.1033037-UTR-M-pyrifera_M_contig65929:119..1491622816548.1033037-UTR-M-pyrifera_M_contig65929:119..149Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65929 120..149 +
1692278040.090144-UTR-M-pyrifera_M_contig65929:119..1491692278040.090144-UTR-M-pyrifera_M_contig65929:119..149Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65929 120..149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.1168904-CDS-M-pyrifera_M_contig65929:149..4131622816548.1168904-CDS-M-pyrifera_M_contig65929:149..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65929 150..413 +
1692278040.1040816-CDS-M-pyrifera_M_contig65929:149..4131692278040.1040816-CDS-M-pyrifera_M_contig65929:149..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65929 150..413 +
1622816548.127782-CDS-M-pyrifera_M_contig65929:939..10711622816548.127782-CDS-M-pyrifera_M_contig65929:939..1071Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65929 940..1071 +
1692278040.1150873-CDS-M-pyrifera_M_contig65929:939..10711692278040.1150873-CDS-M-pyrifera_M_contig65929:939..1071Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65929 940..1071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65929.16008.1

>prot_M-pyrifera_M_contig65929.16008.1 ID=prot_M-pyrifera_M_contig65929.16008.1|Name=mRNA_M-pyrifera_M_contig65929.16008.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MAAVAEASVPDVAEGNADAAAGRAEGSRPPATDEGNANDNDGGGDDDEEE
GASARRRAAVEVVLARLLTDTLASLTRAFEKGALIAGEISGACVISGLYC
DGALVLANVGDCQALYHGQVKSSPGTAVTAQT
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mRNA from alignment at M-pyrifera_M_contig65929:120..1071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65929.16008.1 ID=mRNA_M-pyrifera_M_contig65929.16008.1|Name=mRNA_M-pyrifera_M_contig65929.16008.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=952bp|location=Sequence derived from alignment at M-pyrifera_M_contig65929:120..1071+ (Macrocystis pyrifera P11B4 male)
CACCTGCGAAAGATAGCCGATTTGAGGAAGATGGCGGCTGTCGCCGAAGC
CAGCGTCCCGGACGTGGCGGAGGGCAACGCCGACGCTGCGGCGGGGAGAG
CGGAGGGGTCAAGGCCGCCGGCGACGGACGAAGGCAACGCAAACGACAAC
GACGGTGGTGGCGACGACGACGAGGAGGAGGGGGCGTCTGCGCGAAGAAG
AGCCGCCGTGGAGGTGGTCTTGGCGCGCCTCCTGACTGACACGTTGGCGT
CGTTGACTCGCGCGTTTGAGAAGGGAGCTCTGATCGCCGGCGAGGTGAGA
GAGAGAGAGAGAGAGAGAGGGACGAAAGAGAGAGAAAGAGAGAGAGAGCG
AGTGTGATAGATAGACCTTCGCATCCCTACGTACAACGCCGGGACGGAGT
GGTGGGGGGGTTGTCGACGTTCCTCAGGTTTATGTGAGATGTTGGGGCGG
CGCGACGTGTTCGTACATGACTGCAGTCTTTCACGGACCGAGTGTGTGTC
GTAGGTCGATGAAATGGGCACGTACGCACGTACGTACGTACGTACGTACG
TGAGAGGCAATCGTCGGGGTCTCTGATCCTTGTTGGCTTGCACTCTTAAT
AGTACGTGATTCATAGGTAGGTTGTCGTCCGGGGCTGACTGATCGCTGGC
CGAACTTGAAAACCGCTTCCGTCTAACCATTGATTGCTCTTCGTCGCGCA
CCGTTGTGCCTCGTCCTGTCCTGTTCTATCCCGACGTGCTTGCTGCCTGG
CTGTTTTGGCTGTTTTGGCTGCGACTTTGCTCACTTTTCTCTCAAACGTG
TGGTTTTGTTTCGGGCGCAGATTTCGGGTGCATGCGTGATTTCCGGCCTG
TACTGCGACGGAGCGCTGGTTCTGGCCAACGTTGGCGACTGCCAGGCTTT
GTACCACGGGCAGGTCAAGAGTTCCCCCGGCACAGCCGTCACCGCGCAGA
CG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65929:120..1071+

>mRNA_M-pyrifera_M_contig65929.16008.1 ID=mRNA_M-pyrifera_M_contig65929.16008.1|Name=mRNA_M-pyrifera_M_contig65929.16008.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig65929:120..1071+ (Macrocystis pyrifera P11B4 male)
ATGGCGGCTGTCGCCGAAGCCAGCGTCCCGGACGTGGCGGAGGGCAACGC
CGACGCTGCGGCGGGGAGAGCGGAGGGGTCAAGGCCGCCGGCGACGGACG
AAGGCAACGCAAACGACAACGACGGTGGTGGCGACGACGACGAGGAGGAG
GGGGCGTCTGCGCGAAGAAGAGCCGCCGTGGAGGTGGTCTTGGCGCGCCT
CCTGACTGACACGTTGGCGTCGTTGACTCGCGCGTTTGAGAAGGGAGCTC
TGATCGCCGGCGAGATGGCGGCTGTCGCCGAAGCCAGCGTCCCGGACGTG
GCGGAGGGCAACGCCGACGCTGCGGCGGGGAGAGCGGAGGGGTCAAGGCC
GCCGGCGACGGACGAAGGCAACGCAAACGACAACGACGGTGGTGGCGACG
ACGACGAGGAGGAGGGGGCGTCTGCGCGAAGAAGAGCCGCCGTGGAGGTG
GTCTTGGCGCGCCTCCTGACTGACACGTTGGCGTCGTTGACTCGCGCGTT
TGAGAAGGGAGCTCTGATCGCCGGCGAGATTTCGGGTGCATGCGTGATTT
CCGGCCTGTACTGCGACGGAGCGCTGGTTCTGGCCAACGTTGGCGACTGC
CAGGCTTTGTACCACGGGCAGGTCAAGAGTTCCCCCGGCACAGCCGTCAC
CGCGCAGACGATTTCGGGTGCATGCGTGATTTCCGGCCTGTACTGCGACG
GAGCGCTGGTTCTGGCCAACGTTGGCGACTGCCAGGCTTTGTACCACGGG
CAGGTCAAGAGTTCCCCCGGCACAGCCGTCACCGCGCAGACG
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