mRNA_M-pyrifera_M_contig65906.16004.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65906.16004.1
Unique NamemRNA_M-pyrifera_M_contig65906.16004.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65906.16004.1 vs. uniprot
Match: A0A0B7AEA7_9EUPU (Uncharacterized protein n=2 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7AEA7_9EUPU)

HSP 1 Score: 95.5 bits (236), Expect = 3.280e-21
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 LSGEMFSFLTFYLENGEKYLKTPHGVAINYWDFFVHGGLYIFMIHSILSGRNWRSLGLLWFGSIGYSMVVLLGGALSGQYSDQVHWSILLNVPFVLLPV 297
            L G + +F+ FY   GE YLKT HG AINYWD  VH  LY+ MI     G+++R++GL W G+I  SM+VLL G ++G   +    SILLN+P+VLLP+
Sbjct:   85 LDGYISNFMGFYFAEGEPYLKTAHGTAINYWDGTVHFALYLAMIALYSKGKSYRNVGLYWVGTILNSMIVLLQGGVAGN--NPFKLSILLNIPYVLLPL 181          
BLAST of mRNA_M-pyrifera_M_contig65906.16004.1 vs. uniprot
Match: A0A8J6KBT1_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6KBT1_ELECQ)

HSP 1 Score: 93.2 bits (230), Expect = 2.180e-20
Identity = 43/97 (44.33%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    7 GEMFSFLTFYLENGEKYLKTPHGVAINYWDFFVHGGLYIFMIHSILSGRNWRSLGLLWFGSIGYSMVVLLGGALSGQYSDQVHWSILLNVPFVLLPV 297
            G +  F+ FY++ GE YL+T HG+ I  WD  VH  LY+ M+ +I  G N++++GL W GS+  SM+V L G + G+Y  +V  + +LNVP++LLPV
Sbjct:   86 GYISGFMEFYMQEGEPYLRTAHGILICLWDGTVHYLLYLIMLGAIARGENYKTVGLFWLGSLLMSMLVFLPGNVVGKYGTEVRPAFILNVPYLLLPV 182          
BLAST of mRNA_M-pyrifera_M_contig65906.16004.1 vs. uniprot
Match: A0A7K7BA25_9AVES (TM6S2 protein (Fragment) n=4 Tax=Nothoprocta TaxID=8806 RepID=A0A7K7BA25_9AVES)

HSP 1 Score: 92.8 bits (229), Expect = 3.000e-20
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    7 GEMFSFLTFYLENGEKYLKTPHGVAINYWDFFVHGGLYIFMIHSILSGRNWRSLGLLWFGSIGYSMVVLLGGALSGQYSDQVHWSILLNVPFVLLPV 297
            G +  F   Y+  GE +L+T HGV + YWD  VH GLY+ M+ ++   R++RSLGL W GS+  S+VV L G L G++S ++  ++LLNVP+V LPV
Sbjct:   86 GFISGFAELYVREGEPFLRTAHGVLLCYWDGTVHHGLYLAMLAAMSQRRSYRSLGLFWLGSVMMSIVVFLLGNLLGKHSSELSAAVLLNVPYVALPV 182          
BLAST of mRNA_M-pyrifera_M_contig65906.16004.1 vs. uniprot
Match: UPI0011C45A41 (transmembrane 6 superfamily member 2 isoform X1 n=2 Tax=Calypte anna TaxID=9244 RepID=UPI0011C45A41)

HSP 1 Score: 92.8 bits (229), Expect = 3.080e-20
Identity = 43/97 (44.33%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    7 GEMFSFLTFYLENGEKYLKTPHGVAINYWDFFVHGGLYIFMIHSILSGRNWRSLGLLWFGSIGYSMVVLLGGALSGQYSDQVHWSILLNVPFVLLPV 297
            G +  F+ FY+  GE +L+T HG+ I YWD  VH GLY+ MI +I   +++R+LGL W GS+  S+ V L G L G+YS ++  ++LLN+P++L+P+
Sbjct:   88 GFISGFVEFYIREGEPHLRTAHGIMICYWDGIVHYGLYLTMIVAIGQRKSYRNLGLFWLGSLVMSITVFLLGNLIGKYSSELSPALLLNLPYILIPL 184          
BLAST of mRNA_M-pyrifera_M_contig65906.16004.1 vs. uniprot
Match: A0A814GJV7_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814GJV7_9BILA)

HSP 1 Score: 92.8 bits (229), Expect = 4.280e-20
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   31 FYLENGEKYLKTPHGVAINYWDFFVHGGLYIFMIHSILSGRN----WRSLGLLWFGSIGYSMVVLLGGALSGQYSDQVHWSILLNVPFVLLPV 297
            FYLE GE YLKT HG+ INYWD  VH  LY+ M++ IL  +     +R L L W GSI  SM+VLLGGA +GQ+   +  S LLN+P+ + P+
Sbjct:  137 FYLEQGEVYLKTSHGLFINYWDGTVHYTLYLIMLYCILKKQTNKKFYRFLSLFWCGSILNSMIVLLGGAAAGQFGTHIKPSYLLNIPYAMFPL 229          
BLAST of mRNA_M-pyrifera_M_contig65906.16004.1 vs. uniprot
Match: UPI001403C62C (transmembrane 6 superfamily member 1-like n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001403C62C)

HSP 1 Score: 92.8 bits (229), Expect = 4.530e-20
Identity = 42/97 (43.30%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    7 GEMFSFLTFYLENGEKYLKTPHGVAINYWDFFVHGGLYIFMIHSILSGRNWRSLGLLWFGSIGYSMVVLLGGALSGQYSDQVHWSILLNVPFVLLPV 297
            G +  F+TFY++ GE YL++ +G+ I YWD  VH  LY+ MI +I  G N+RS+GL W GS+  S++ LL G   G++  ++  + LLN+P+VL+P+
Sbjct:  141 GYIKGFMTFYMKEGEPYLRSAYGIVICYWDGTVHYVLYLTMIGAITLGWNYRSVGLYWLGSLVMSLITLLLGTSVGKFGSEIRPAFLLNIPYVLIPI 237          
BLAST of mRNA_M-pyrifera_M_contig65906.16004.1 vs. uniprot
Match: UPI001B88A1D9 (transmembrane 6 superfamily member 1-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88A1D9)

HSP 1 Score: 92.0 bits (227), Expect = 6.080e-20
Identity = 42/96 (43.75%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    7 GEMFSFLTFYLENGEKYLKTPHGVAINYWDFFVHGGLYIFMIHSILSGRNWRSLGLLWFGSIGYSMVVLLGGALSGQYSDQVHWSILLNVPFVLLP 294
            G + +F+TFYL+ GE YLKT HG  I YWD  +H  LY+ ++ +I  G+++R + L W GS+ +SM+VL+   L G +   V W +LLN+PF+++P
Sbjct:   87 GLIENFMTFYLKEGEPYLKTAHGTMICYWDGVIHYALYLMILAAISWGQSYREVALYWVGSLAHSMLVLMPAILMGPHG--VKWPVLLNIPFLIIP 180          
BLAST of mRNA_M-pyrifera_M_contig65906.16004.1 vs. uniprot
Match: UPI001458C4BC (transmembrane 6 superfamily member 1-like isoform X1 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI001458C4BC)

HSP 1 Score: 92.0 bits (227), Expect = 7.810e-20
Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    7 GEMFSFLTFYLENGEKYLKTPHGVAINYWDFFVHGGLYIFMIHSILSGRNWRSLGLLWFGSIGYSMVVLLGGALSGQYSDQVHWSILLNVPFVLLPV 297
            G + SF+ FYL  GE YLKT HG  INYWD  VH GLYI+++        +R  GL W GSI  S++++L   L G+Y   V W ILLN P++ +PV
Sbjct:   89 GIIHSFMAFYLLEGEPYLKTTHGTFINYWDAAVHFGLYIYILKQDAYNEKYRKAGLYWVGSITNSLLLILISGLIGEYG--VRWPILLNTPYLCIPV 183          
BLAST of mRNA_M-pyrifera_M_contig65906.16004.1 vs. uniprot
Match: UPI0009A46D89 (transmembrane 6 superfamily member 2-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A46D89)

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-19
Identity = 43/97 (44.33%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    7 GEMFSFLTFYLENGEKYLKTPHGVAINYWDFFVHGGLYIFMIHSILSGRNWRSLGLLWFGSIGYSMVVLLGGALSGQYSDQVHWSILLNVPFVLLPV 297
            G +  F+ FYL+ GE YL++ +G+ I YW+  VH  LY+ MI +I  G  +RS+GL W GSI  S+V LL G + G+Y  ++  +ILLN+P++L+P+
Sbjct:   88 GYIKGFMGFYLKEGEPYLRSAYGILICYWNGTVHYALYLMMITAISLGWTYRSVGLYWVGSILMSLVTLLVGTVIGKYGTEIRPAILLNIPYMLIPI 184          
BLAST of mRNA_M-pyrifera_M_contig65906.16004.1 vs. uniprot
Match: UPI001CFBCF1F (transmembrane 6 superfamily member 1-like isoform X1 n=2 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBCF1F)

HSP 1 Score: 90.9 bits (224), Expect = 1.740e-19
Identity = 40/97 (41.24%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    7 GEMFSFLTFYLENGEKYLKTPHGVAINYWDFFVHGGLYIFMIHSILSGRNWRSLGLLWFGSIGYSMVVLLGGALSGQYSDQVHWSILLNVPFVLLPV 297
            G +  F++FY++ GE YL+T +GV   YWD  VH  LY+ +I +I  G+N+R  GL W GSI  SM+VL+ G++ G++   +  ++LLN+P++ +P+
Sbjct:   86 GFISGFMSFYMKEGEPYLRTSYGVMACYWDGSVHYILYLMLISAIGQGKNYRHTGLYWLGSIMTSMLVLIPGSVIGKFGSLIRPAVLLNIPYIFIPI 182          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65906.16004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B7AEA7_9EUPU3.280e-2149.49Uncharacterized protein n=2 Tax=Arion vulgaris Tax... [more]
A0A8J6KBT1_ELECQ2.180e-2044.33Uncharacterized protein n=1 Tax=Eleutherodactylus ... [more]
A0A7K7BA25_9AVES3.000e-2046.39TM6S2 protein (Fragment) n=4 Tax=Nothoprocta TaxID... [more]
UPI0011C45A413.080e-2044.33transmembrane 6 superfamily member 2 isoform X1 n=... [more]
A0A814GJV7_9BILA4.280e-2050.54Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
UPI001403C62C4.530e-2043.30transmembrane 6 superfamily member 1-like n=1 Tax=... [more]
UPI001B88A1D96.080e-2043.75transmembrane 6 superfamily member 1-like n=1 Tax=... [more]
UPI001458C4BC7.810e-2047.42transmembrane 6 superfamily member 1-like isoform ... [more]
UPI0009A46D891.100e-1944.33transmembrane 6 superfamily member 2-like n=1 Tax=... [more]
UPI001CFBCF1F1.740e-1941.24transmembrane 6 superfamily member 1-like isoform ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65906contigM-pyrifera_M_contig65906:146..442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score97.1
Seed ortholog evalue4.9e-18
Seed eggNOG ortholog8479.XP_005279014.1
Preferred nameTM6SF2
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0008150,GO:0012505,GO:0016020,GO:0019216,GO:0019222,GO:0031090,GO:0031984,GO:0033116,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0065007,GO:0080090,GO:0098588,GO:0098827
EggNOG free text desc.Transmembrane 6 superfamily member 2
EggNOG OGs2CFM4@1,2QRB2@2759,38FX5@33154,3B99H@33208,3CR66@33213,481IK@7711,48YKI@7742,4CIX4@8459
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.8778439-CDS-M-pyrifera_M_contig65906:145..4301622816547.8778439-CDS-M-pyrifera_M_contig65906:145..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65906 146..430 -
1692278039.986816-CDS-M-pyrifera_M_contig65906:145..4301692278039.986816-CDS-M-pyrifera_M_contig65906:145..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65906 146..430 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.8880448-UTR-M-pyrifera_M_contig65906:430..4421622816547.8880448-UTR-M-pyrifera_M_contig65906:430..442Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65906 431..442 -
1692278039.9973166-UTR-M-pyrifera_M_contig65906:430..4421692278039.9973166-UTR-M-pyrifera_M_contig65906:430..442Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65906 431..442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65906.16004.1prot_M-pyrifera_M_contig65906.16004.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65906 146..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65906.16004.1

>prot_M-pyrifera_M_contig65906.16004.1 ID=prot_M-pyrifera_M_contig65906.16004.1|Name=mRNA_M-pyrifera_M_contig65906.16004.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
MFSFLTFYLENGEKYLKTPHGVAINYWDFFVHGGLYIFMIHSILSGRNWR
SLGLLWFGSIGYSMVVLLGGALSGQYSDQVHWSILLNVPFVLLPV
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mRNA from alignment at M-pyrifera_M_contig65906:146..442-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65906.16004.1 ID=mRNA_M-pyrifera_M_contig65906.16004.1|Name=mRNA_M-pyrifera_M_contig65906.16004.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig65906:146..442- (Macrocystis pyrifera P11B4 male)
TTGTCTGGGGAAATGTTCTCATTCTTGACGTTCTACCTTGAGAATGGAGA GAAGTACCTGAAAACTCCCCATGGCGTCGCAATCAACTATTGGGATTTTT TTGTCCATGGTGGTTTGTACATTTTCATGATTCACTCCATCTTGAGCGGC CGAAATTGGAGATCATTGGGTCTTCTGTGGTTCGGATCAATTGGATACTC CATGGTGGTGCTCCTTGGAGGTGCTTTGAGTGGTCAATATTCTGATCAAG TCCATTGGAGTATTCTCTTGAATGTTCCATTTGTCCTCCTTCCAGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65906:146..442-

>mRNA_M-pyrifera_M_contig65906.16004.1 ID=mRNA_M-pyrifera_M_contig65906.16004.1|Name=mRNA_M-pyrifera_M_contig65906.16004.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig65906:146..442- (Macrocystis pyrifera P11B4 male)
ATGTTCTCATTCTTGACGTTCTACCTTGAGAATGGAGAGAAGTACCTGAA
AACTCCCCATGGCGTCGCAATCAACTATTGGGATTTTTTTGTCCATGGTG
GTTTGTACATTTTCATGATTCACTCCATCTTGAGCGGCCGAAATTGGAGA
TCATTGGGTCTTCTGTGGTTCGGATCAATTGGATACTCCATGGTGGTGCT
CCTTGGAGGTGCTTTGAGTGGTCAATATTCTGATCAAGTCCATTGGAGTA
TTCTCTTGAATGTTCCATTTGTCCTCCTTCCAGTCATGTTCTCATTCTTG
ACGTTCTACCTTGAGAATGGAGAGAAGTACCTGAAAACTCCCCATGGCGT
CGCAATCAACTATTGGGATTTTTTTGTCCATGGTGGTTTGTACATTTTCA
TGATTCACTCCATCTTGAGCGGCCGAAATTGGAGATCATTGGGTCTTCTG
TGGTTCGGATCAATTGGATACTCCATGGTGGTGCTCCTTGGAGGTGCTTT
GAGTGGTCAATATTCTGATCAAGTCCATTGGAGTATTCTCTTGAATGTTC
CATTTGTCCTCCTTCCAGTC
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