mRNA_M-pyrifera_M_contig65905.16003.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65905.16003.1
Unique NamemRNA_M-pyrifera_M_contig65905.16003.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65905.16003.1 vs. uniprot
Match: A0A1Z5KY60_ORNMO (Leucine rich domain-containing protein (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5KY60_ORNMO)

HSP 1 Score: 57.0 bits (136), Expect = 1.090e-6
Identity = 42/132 (31.82%), Postives = 64/132 (48.48%), Query Frame = 1 
Query:    1 LKGQNLASLPSALWLDPRALRILPSVVSVDVSSNALTALPANVFFSNTYHLQRFIARDNRIGPRLPVDFGFLRNLRIADLARNRLVFLPDGIGELAALEVLDVSSNALRGPDAIPASIGRCVKLRSLKLDNN 396
            L   NL   P  L+L    LR L      DVS N +T LP  ++     H+++    +NRI               + DL+RNR+V +P+ +GEL A E L+++ N +     I  SI  C +L+ L+L+ N
Sbjct:   20 LSNINLREFPKELFLISGVLRTL------DVSDNKITTLPTTIY--KFEHMKQLTMNNNRI--------------YVVDLSRNRIVEVPEQVGELTATE-LNLNQNQI---SLISESIADCPRLKVLRLEEN 125
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BLAST of mRNA_M-pyrifera_M_contig65905.16003.1 vs. uniprot
Match: D7VT00_SPHSI (Leucine Rich Repeat protein n=4 Tax=Sphingobacterium spiritivorum TaxID=258 RepID=D7VT00_SPHSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.580e-5
Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 1 
Query:   76 VVSVDVSSNALTALPANVFFSNTYHLQRFIARDNRIGPRLPVDFGFLRNLRIADLARNRLVFLPDGIGELAALEVLDVSSNALRGPDAIPASIGRCVKLRSLKL 387
            + +++  S AL +   +  F++T HL+  +   N  G  LP      + LR+ DL+RN L  +P+GIG+L ALE+L    N      A+P SI +  KL+ L L
Sbjct:   63 ITALNKQSPALDSDILDKIFNHTPHLEELVLHSNLTG--LPEISSPGKKLRVLDLSRNNLDIIPEGIGQLTALEILRCDYN--EHLKALPQSIAQLSKLQLLSL 162
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BLAST of mRNA_M-pyrifera_M_contig65905.16003.1 vs. uniprot
Match: UPI00129B79F4 (hypothetical protein n=1 Tax=Pseudomonas sp. EMN2 TaxID=2615212 RepID=UPI00129B79F4)

HSP 1 Score: 55.1 bits (131), Expect = 2.470e-5
Identity = 38/104 (36.54%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:   94 SSNALTALPANVFFSNTYHLQRFIARDNRIGPRLPVDFGFLRNLRIADLARNRLVFLPDGIGELAALEVLDVSSNALRGPDAIPASIGRCVKLRSLKLDNNRIE 405
            S   L ALPA + F++ ++L         +       F  LR L   DL+ NRLV LPD +GEL+ L  L+VS N +R  D    +IGR   L  L ++ N +E
Sbjct:  965 SLQVLPALPAGLEFAHVHYLALHRLELGEVAGDWLRRFPALRRL---DLSDNRLVVLPDALGELSHLAELNVSGNLIRWSDQANLAIGRLNLLEVLNVNRNPLE 1065
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BLAST of mRNA_M-pyrifera_M_contig65905.16003.1 vs. uniprot
Match: UPI0010F567D0 (hypothetical protein n=1 Tax=Pseudomonas sp. G(2018) TaxID=2502242 RepID=UPI0010F567D0)

HSP 1 Score: 54.3 bits (129), Expect = 4.560e-5
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1 
Query:   40 WLDPRAL----RILPSVVSVDVSSNALTALPANVFFSNTYHLQRFIARDNRIGPRLPVDFGFLRNLRIADLARNRLVFLPDG---IGELAALEVLDVSSNALRGPDAIPASIGRCVKLRSLKLDNNRIE 405
            W + R L    + L  + +++++ NA  +  A    S+  +L++  ARD  +  R+P   G L  LR+ DLA NR+V  PD    +G L  LEVL +  N LR P  +    G    L+ L+L N  IE
Sbjct: 1164 WKELRELPDIRKFLNQITTLNLN-NARYSAHAGGLLSDLPNLRQLSARDGSL-TRIPQVIGELHQLRVLDLADNRIVLAPDSRELLGRLTRLEVLRLDGNPLRHPPDVSGMPG----LKVLRLANTGIE 1286
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65905.16003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1Z5KY60_ORNMO1.090e-631.82Leucine rich domain-containing protein (Fragment) ... [more]
D7VT00_SPHSI1.580e-534.62Leucine Rich Repeat protein n=4 Tax=Sphingobacteri... [more]
UPI00129B79F42.470e-536.54hypothetical protein n=1 Tax=Pseudomonas sp. EMN2 ... [more]
UPI0010F567D04.560e-533.33hypothetical protein n=1 Tax=Pseudomonas sp. G(201... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65905contigM-pyrifera_M_contig65905:279..896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score62.8
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog34373.CCU76253
KEGG rclassRC00295
KEGG koko:K01768
KEGG ReactionR00089,R00434
KEGG Pathwayko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213
KEGG ModuleM00695
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0007154,GO:0007165,GO:0007186,GO:0008150,GO:0009987,GO:0016020,GO:0023052,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944
EggNOG free text desc.Adenylyl- / guanylyl cyclase, catalytic domain
EggNOG OGs20VT2@147548,38GSJ@33154,3NUNK@4751,3QQ0J@4890,COG2114@1,KOG0618@2759
EC4.6.1.1
COG Functional cat.T
Best tax levelLeotiomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size618
Cds size618
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.8378208-CDS-M-pyrifera_M_contig65905:278..8961622816547.8378208-CDS-M-pyrifera_M_contig65905:278..896Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65905 279..896 +
1692278039.9747014-CDS-M-pyrifera_M_contig65905:278..8961692278039.9747014-CDS-M-pyrifera_M_contig65905:278..896Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65905 279..896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65905.16003.1prot_M-pyrifera_M_contig65905.16003.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65905 279..896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65905.16003.1

>prot_M-pyrifera_M_contig65905.16003.1 ID=prot_M-pyrifera_M_contig65905.16003.1|Name=mRNA_M-pyrifera_M_contig65905.16003.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=206bp
LKGQNLASLPSALWLDPRALRILPSVVSVDVSSNALTALPANVFFSNTYH
LQRFIARDNRIGPRLPVDFGFLRNLRIADLARNRLVFLPDGIGELAALEV
LDVSSNALRGPDAIPASIGRCVKLRSLKLDNNRIEALPDALGDCTSLEQL
TLSHNLVARLPDSICRTCRHLTVLDAGWNVIGELPPGIGRLKRLRVLLAP
NNKLLG
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mRNA from alignment at M-pyrifera_M_contig65905:279..896+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65905.16003.1 ID=mRNA_M-pyrifera_M_contig65905.16003.1|Name=mRNA_M-pyrifera_M_contig65905.16003.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig65905:279..896+ (Macrocystis pyrifera P11B4 male)
TTGAAAGGACAAAATCTAGCTTCTCTCCCATCTGCATTGTGGCTTGATCC
TCGTGCACTTCGAATCCTTCCATCCGTTGTTTCCGTTGATGTCTCTTCCA
ATGCTCTCACAGCACTTCCAGCCAATGTGTTCTTCTCCAACACATACCAT
CTGCAGCGGTTTATCGCACGTGACAATCGCATTGGTCCACGATTGCCTGT
TGACTTTGGTTTCTTGCGGAATCTTCGTATTGCAGACCTTGCACGGAATC
GGCTTGTGTTTCTTCCTGATGGGATAGGAGAATTGGCTGCTTTGGAAGTG
CTGGATGTGTCATCCAACGCGCTTCGTGGTCCAGATGCAATTCCAGCTTC
GATTGGACGATGTGTCAAGCTCCGATCCCTCAAACTCGACAACAATCGCA
TTGAAGCACTTCCTGATGCATTAGGTGATTGCACATCACTGGAACAACTC
ACTCTCTCGCACAACCTTGTCGCACGCCTCCCAGATTCCATCTGTCGTAC
TTGTCGCCACCTTACTGTCCTTGATGCTGGTTGGAACGTCATTGGTGAGC
TTCCACCTGGGATTGGTAGGTTGAAACGACTTCGTGTCCTACTTGCACCA
AACAACAAACTCCTTGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65905:279..896+

>mRNA_M-pyrifera_M_contig65905.16003.1 ID=mRNA_M-pyrifera_M_contig65905.16003.1|Name=mRNA_M-pyrifera_M_contig65905.16003.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1236bp|location=Sequence derived from alignment at M-pyrifera_M_contig65905:279..896+ (Macrocystis pyrifera P11B4 male)
TTGAAAGGACAAAATCTAGCTTCTCTCCCATCTGCATTGTGGCTTGATCC
TCGTGCACTTCGAATCCTTCCATCCGTTGTTTCCGTTGATGTCTCTTCCA
ATGCTCTCACAGCACTTCCAGCCAATGTGTTCTTCTCCAACACATACCAT
CTGCAGCGGTTTATCGCACGTGACAATCGCATTGGTCCACGATTGCCTGT
TGACTTTGGTTTCTTGCGGAATCTTCGTATTGCAGACCTTGCACGGAATC
GGCTTGTGTTTCTTCCTGATGGGATAGGAGAATTGGCTGCTTTGGAAGTG
CTGGATGTGTCATCCAACGCGCTTCGTGGTCCAGATGCAATTCCAGCTTC
GATTGGACGATGTGTCAAGCTCCGATCCCTCAAACTCGACAACAATCGCA
TTGAAGCACTTCCTGATGCATTAGGTGATTGCACATCACTGGAACAACTC
ACTCTCTCGCACAACCTTGTCGCACGCCTCCCAGATTCCATCTGTCGTAC
TTGTCGCCACCTTACTGTCCTTGATGCTGGTTGGAACGTCATTGGTGAGC
TTCCACCTGGGATTGGTAGGTTGAAACGACTTCGTGTCCTACTTGCACCA
AACAACAAACTCCTTGGTTTGAAAGGACAAAATCTAGCTTCTCTCCCATC
TGCATTGTGGCTTGATCCTCGTGCACTTCGAATCCTTCCATCCGTTGTTT
CCGTTGATGTCTCTTCCAATGCTCTCACAGCACTTCCAGCCAATGTGTTC
TTCTCCAACACATACCATCTGCAGCGGTTTATCGCACGTGACAATCGCAT
TGGTCCACGATTGCCTGTTGACTTTGGTTTCTTGCGGAATCTTCGTATTG
CAGACCTTGCACGGAATCGGCTTGTGTTTCTTCCTGATGGGATAGGAGAA
TTGGCTGCTTTGGAAGTGCTGGATGTGTCATCCAACGCGCTTCGTGGTCC
AGATGCAATTCCAGCTTCGATTGGACGATGTGTCAAGCTCCGATCCCTCA
AACTCGACAACAATCGCATTGAAGCACTTCCTGATGCATTAGGTGATTGC
ACATCACTGGAACAACTCACTCTCTCGCACAACCTTGTCGCACGCCTCCC
AGATTCCATCTGTCGTACTTGTCGCCACCTTACTGTCCTTGATGCTGGTT
GGAACGTCATTGGTGAGCTTCCACCTGGGATTGGTAGGTTGAAACGACTT
CGTGTCCTACTTGCACCAAACAACAAACTCCTTGGT
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