mRNA_M-pyrifera_M_contig65863.15996.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65863.15996.1
Unique NamemRNA_M-pyrifera_M_contig65863.15996.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65863.15996.1 vs. uniprot
Match: A0A5A8D997_CAFRO (Glucosidase 2 subunit beta n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D997_CAFRO)

HSP 1 Score: 125 bits (314), Expect = 3.300e-31
Identity = 58/110 (52.73%), Postives = 74/110 (67.27%), Query Frame = 1
Query:   97 EYGTDGAWYPLGEKCFESSISKYRYKICPFERATQDSTSLGSFHKWRVSPSESTPSNPPVMEFTNGAHCWQGPQRSLALTFKCGPVEKILSVDEPSKCTYTAIAESPAAC 426
            +YG D A+YPL  KCFE SI++Y YKICPF  A QD TSLG F  W+     S      VM FT+G  CW GP RS+ ++F+CG  +K+L+VDEPSKC Y++   +PAAC
Sbjct:  301 DYGPDSAFYPLKGKCFEISITQYTYKICPFVDAKQDFTSLGKFSGWQEGSDHS------VMLFTDGQSCWNGPARSMTVSFECGSEDKVLAVDEPSKCAYSSRMSTPAAC 404          
BLAST of mRNA_M-pyrifera_M_contig65863.15996.1 vs. uniprot
Match: A0A2D4BUU8_PYTIN (Glucosidase 2 subunit beta n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUU8_PYTIN)

HSP 1 Score: 113 bits (283), Expect = 3.030e-26
Identity = 57/160 (35.62%), Postives = 88/160 (55.00%), Query Frame = 1
Query:    7 EELRKELRDMEXXXXXXXXXXXKKQDKQNREYGTDGAWYPLGEKCFESSISKYRYKICPFERATQDSTSLGSFHKWRVSPSESTPSNPP-------VMEFTNGAHCWQGPQRSLALTFKCGPVEKILSVDEPSKCTYTAIAESPAACTQQLLQEIKKDAG 465
            E LR+ L+++E            K+   + +YG D A++ L ++C E ++ KY Y++CPF    QD TSLG +  W    +E              VM+FT+G  CW GP+RS+ +T++CG   +I+SVDEPS C Y   A+S  ACT  +++  K+D  
Sbjct:  564 ESLRQVLKEIEDNIRKLESDRDAKRRDLSFDYGPDRAFFALKDECIEKTVEKYVYRLCPFTNVQQDFTSLGRWDAWGARQAEGENKGTDDCAKDYSVMQFTHGQRCWNGPERSVRVTWRCGENNEIVSVDEPSTCVYEMAAQSYLACTADVVESSKQDVA 723          
BLAST of mRNA_M-pyrifera_M_contig65863.15996.1 vs. uniprot
Match: A0A7S2WK79_9STRA (Glucosidase 2 subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WK79_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.420e-25
Identity = 54/113 (47.79%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   88 QNREYGTDGAWYPLGEKCFESSISKYRYKICPFERATQDSTSLGSFHKWRVSPSESTPSNPPVMEFTNGAHCWQGPQRSLALTFKCGPVEKILSVDEPSKCTYTAIAESPAAC 426
            +  ++G    ++ L  KCFES +S ++Y ICPF  A QD TSLG F  W+ +          VM F NGA CW GP+RSL +TF CG  +KILSV+EP  C Y A   SPAAC
Sbjct:  325 EGTDFGLLKEYFVLNGKCFESHVSGFKYSICPFGDAKQDHTSLGKFTTWKDTN---------VMLFDNGAKCWNGPKRSLQVTFTCGAEDKILSVEEPETCVYAASFLSPAAC 428          
BLAST of mRNA_M-pyrifera_M_contig65863.15996.1 vs. uniprot
Match: A0A812L8W4_9DINO (Glucosidase 2 subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812L8W4_9DINO)

HSP 1 Score: 108 bits (270), Expect = 2.730e-25
Identity = 48/124 (38.71%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   94 REYGTDGAWYPLGEKCFESSISKYRYKICPFERATQDSTSLGSFHKWRVSPSESTPSNPPVMEFTNGAHCWQGPQRSLALTFKCGPVEKILSVDEPSKCTYTAIAESPAACTQQLLQEIKKDAG 465
            +++G   A+Y L  +CF+  + KY Y +CP+  A QD TSLGS+  ++V  ++        M FT GA CW GPQR++ +T +CG    + SVDEPSKC Y+A+ ++PA C       +  + G
Sbjct:  241 KDFGPGAAFYKLDGQCFDVKVQKYTYSVCPYGSAKQDQTSLGSWSGFQVEYTK--------MLFTGGATCWNGPQRTMTVTLECGATNALHSVDEPSKCQYSAVLQTPAVCDDLFAHPVDANLG 356          
BLAST of mRNA_M-pyrifera_M_contig65863.15996.1 vs. uniprot
Match: A0A1D1Z7H8_9ARAE (Glucosidase 2 subunit beta (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z7H8_9ARAE)

HSP 1 Score: 109 bits (273), Expect = 6.600e-25
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   82 DKQNREYGTDGAWYPLGEKCFESSISKYRYKICPFERATQ----DSTSLGSFHKWRVSPSESTPSNPPVMEFTNGAHCWQGPQRSLALTFKCGPVEKILSVDEPSKCTYTAIAESPAACTQQLLQEIK 453
            +K  R++G D  +Y   + CFE+   KY YKICPF+ A+Q     +T LGS+ K+  S          VM+F+NG  CW GP RSL + F+CG   +++ VDEPS+C Y +I  +P  C ++ LQE++
Sbjct:  551 EKLKRDFGGDKEFYSFHDHCFETKEDKYVYKICPFKEASQVEGHSTTRLGSWDKFEESYR--------VMQFSNGDRCWNGPDRSLKVRFRCGLKNEVMDVDEPSRCEYVSIMSTPVLCLEEKLQELQ 670          
BLAST of mRNA_M-pyrifera_M_contig65863.15996.1 vs. uniprot
Match: A0A6J1K4T8_CUCMA (Glucosidase 2 subunit beta n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1K4T8_CUCMA)

HSP 1 Score: 108 bits (269), Expect = 2.230e-24
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   85 KQNREYGTDGAWYPLGEKCFESSISKYRYKICPFERATQ----DSTSLGSFHKWRVSPSESTPSNPPVMEFTNGAHCWQGPQRSLALTFKCGPVEKILSVDEPSKCTYTAIAESPAACTQQLLQEIK 453
            K   ++G +  +Y   ++CFES  +KY YKICP+++A+Q     +T LG + K+  S          VM F++G HCW GP RSL +  +CG    I  VDEPS+C YTA+  +PAAC ++ LQE+K
Sbjct:  518 KLQNDFGPEKEFYSFYDQCFESKKNKYIYKICPYKQASQVEGHSTTRLGRWSKFEDSYG--------VMIFSSGDHCWNGPDRSLKVKLRCGLKNDITDVDEPSRCEYTALLSTPAACVEEKLQELK 636          
BLAST of mRNA_M-pyrifera_M_contig65863.15996.1 vs. uniprot
Match: A0A072UM12_MEDTR (Glucosidase 2 subunit beta n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A072UM12_MEDTR)

HSP 1 Score: 106 bits (265), Expect = 7.670e-24
Identity = 51/127 (40.16%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   85 KQNREYGTDGAWYPLGEKCFESSISKYRYKICPFERATQD----STSLGSFHKWRVSPSESTPSNPPVMEFTNGAHCWQGPQRSLALTFKCGPVEKILSVDEPSKCTYTAIAESPAACTQQLLQEIK 453
            KQ  ++G    +Y   ++CFES  +KY YK+CP+++A+Q+    +T LG + K+  S          VM F+NG HCW GP RSL +  KCG   +I  VDEPS+C Y A+  +PA C ++ L+E++
Sbjct:  509 KQKLDFGPAKEFYSFYDRCFESKQNKYIYKVCPYKQASQEEGHSTTRLGRWDKFEDSYK--------VMVFSNGDHCWNGPDRSLKVKLKCGLTNEITDVDEPSRCEYVALLATPALCQEEKLKELQ 627          
BLAST of mRNA_M-pyrifera_M_contig65863.15996.1 vs. uniprot
Match: M1A082_SOLTU (Glucosidase 2 subunit beta n=10 Tax=Solanum TaxID=4107 RepID=M1A082_SOLTU)

HSP 1 Score: 105 bits (261), Expect = 2.630e-23
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 1
Query:   79 QDKQNREYGTDGAWYPLGEKCFESSISKYRYKICPFERATQ----DSTSLGSFHKWRVSPSESTPSNPPVMEFTNGAHCWQGPQRSLALTFKCGPVEKILSVDEPSKCTYTAIAESPAACTQQLLQEIK 453
            + K   ++G +  +Y    +CFES  +KY YKICPF+ ATQ     +T LG++ K+  S           M+FTNG HCW GP RS+ +  +CG   ++  +DEPS+C Y A   +PA C ++ L+E++
Sbjct:  495 KQKLKHDFGPEKEFYSFHGQCFESKENKYTYKICPFKEATQVEGYSTTRLGNWDKFEDSYR--------TMQFTNGDHCWNGPNRSVKVKLRCGLKNEVTDIDEPSRCEYLAFLSTPALCLEEKLKELQ 615          
BLAST of mRNA_M-pyrifera_M_contig65863.15996.1 vs. uniprot
Match: A0A024FWS0_9STRA (Glucosidase 2 subunit beta n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FWS0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.890e-23
Identity = 52/122 (42.62%), Postives = 66/122 (54.10%), Query Frame = 1
Query:   91 NREYGTDGAWYPLGEKCFESSISKYRYKICPFERATQDSTSLGSFHKWRVSPSESTPSNPPVMEFTNGAHCWQGPQRSLALTFKCGPVEKILSVDEPSKCTYTAIAESPAACTQQLLQEIKK 456
            N  YG     Y L + C E+S S Y YKIC F +A Q+S SLG      V            + FTNG HCW GPQRS+ +T +C P  ++L V+EPS C Y A  +SP AC    LQ +K+
Sbjct:  345 NANYGPQSVLYSLRDYCIEASPSHYNYKICLFGQAYQNSVSLGVMDSVNVEDDSLM-----QLSFTNGEHCWNGPQRSIVVTLECNPTMELLEVEEPSVCVYKAKLKSPIACDAYHLQRLKR 461          
BLAST of mRNA_M-pyrifera_M_contig65863.15996.1 vs. uniprot
Match: UPI0018AF27BE (glucosidase 2 subunit beta-like n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AF27BE)

HSP 1 Score: 104 bits (260), Expect = 3.420e-23
Identity = 53/152 (34.87%), Postives = 83/152 (54.61%), Query Frame = 1
Query:   13 LRKELRDMEXXXXXXXXXXXKKQDKQNREYGTDGAWYPLGEKCFESSISKYRYKICPFERATQ----DSTSLGSFHKWRVSPSESTPSNPPVMEFTNGAHCWQGPQRSLALTFKCGPVEKILSVDEPSKCTYTAIAESPAACTQQLLQEIKK 456
            +RKE  D+            +  D    ++G +  +Y   + CFES  +KY YK+CPF+ ATQ     +T LG++ K+  S          +M+F+ GA CW GP RSL +   CG   ++  +DEPS+C Y A+  +PA CT++ LQE+++
Sbjct:  436 VRKEYDDLSSKLSKLRSRIARLTDMLKHDFGKEKEFYSFYDHCFESKRNKYIYKVCPFKEATQVEGHSTTRLGNWDKFEDSYR--------IMQFSRGARCWNGPDRSLKVRLWCGLKNELTDIDEPSRCEYKAMLSTPAVCTEEKLQELQQ 579          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65863.15996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8D997_CAFRO3.300e-3152.73Glucosidase 2 subunit beta n=1 Tax=Cafeteria roenb... [more]
A0A2D4BUU8_PYTIN3.030e-2635.63Glucosidase 2 subunit beta n=2 Tax=Pythium insidio... [more]
A0A7S2WK79_9STRA1.420e-2547.79Glucosidase 2 subunit beta n=1 Tax=Rhizochromulina... [more]
A0A812L8W4_9DINO2.730e-2538.71Glucosidase 2 subunit beta n=1 Tax=Symbiodinium sp... [more]
A0A1D1Z7H8_9ARAE6.600e-2540.63Glucosidase 2 subunit beta (Fragment) n=1 Tax=Anth... [more]
A0A6J1K4T8_CUCMA2.230e-2441.73Glucosidase 2 subunit beta n=3 Tax=Cucurbita TaxID... [more]
A0A072UM12_MEDTR7.670e-2440.16Glucosidase 2 subunit beta n=2 Tax=Medicago trunca... [more]
M1A082_SOLTU2.630e-2337.98Glucosidase 2 subunit beta n=10 Tax=Solanum TaxID=... [more]
A0A024FWS0_9STRA2.890e-2342.62Glucosidase 2 subunit beta n=1 Tax=Albugo candida ... [more]
UPI0018AF27BE3.420e-2334.87glucosidase 2 subunit beta-like n=2 Tax=Dioscorea ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65863contigM-pyrifera_M_contig65863:623..1093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue5.5e-27
Seed eggNOG ortholog67593.Physo157882
KEGG rclassRC00017,RC00425
KEGG koko:K01115,ko:K05546,ko:K08288
KEGG ReactionR01310,R02051,R05980,R05981,R07385
KEGG Pathwayko00510,ko00564,ko00565,ko01100,ko01110,ko04014,ko04024,ko04071,ko04072,ko04141,ko04144,ko04666,ko04724,ko04912,ko05231,map00510,map00564,map00565,map01100,map01110,map04014,map04024,map04071,map04072,map04141,map04144,map04666,map04724,map04912,map05231
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0012505,GO:0016051,GO:0017177,GO:0019538,GO:0031974,GO:0032991,GO:0034645,GO:0036211,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0070013,GO:0070085,GO:0071704,GO:0098542,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Glucosidase II beta subunit-like
EggNOG OGs3Q88G@4776,COG1502@1,KOG1329@2759,KOG2397@1,KOG2397@2759
EC3.1.4.4,3.2.1.84
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04091,ko04131
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.4079902-CDS-M-pyrifera_M_contig65863:622..10931622816547.4079902-CDS-M-pyrifera_M_contig65863:622..1093Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65863 623..1093 -
1692278039.7054083-CDS-M-pyrifera_M_contig65863:622..10931692278039.7054083-CDS-M-pyrifera_M_contig65863:622..1093Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65863 623..1093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65863.15996.1prot_M-pyrifera_M_contig65863.15996.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65863 623..1093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65863.15996.1

>prot_M-pyrifera_M_contig65863.15996.1 ID=prot_M-pyrifera_M_contig65863.15996.1|Name=mRNA_M-pyrifera_M_contig65863.15996.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
VLEELRKELRDMERQLRDAEDGLKKKQDKQNREYGTDGAWYPLGEKCFES
SISKYRYKICPFERATQDSTSLGSFHKWRVSPSESTPSNPPVMEFTNGAH
CWQGPQRSLALTFKCGPVEKILSVDEPSKCTYTAIAESPAACTQQLLQEI
KKDAGV*
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mRNA from alignment at M-pyrifera_M_contig65863:623..1093-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65863.15996.1 ID=mRNA_M-pyrifera_M_contig65863.15996.1|Name=mRNA_M-pyrifera_M_contig65863.15996.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig65863:623..1093- (Macrocystis pyrifera P11B4 male)
GTGTTGGAGGAATTGAGGAAAGAATTGAGGGACATGGAGAGGCAATTGCG TGACGCAGAAGATGGGTTGAAGAAGAAGCAAGACAAGCAAAATCGAGAGT ATGGAACAGATGGAGCATGGTACCCTCTGGGTGAAAAGTGCTTCGAGTCT TCCATCTCCAAGTACCGTTACAAGATTTGTCCGTTTGAGCGAGCAACGCA AGATTCCACATCACTGGGATCCTTCCACAAGTGGCGTGTGTCACCCTCCG AATCCACACCTTCCAATCCTCCAGTCATGGAGTTCACCAACGGAGCGCAC TGCTGGCAAGGTCCCCAACGCTCCCTTGCACTCACCTTCAAGTGTGGACC CGTAGAAAAGATTCTCTCCGTCGACGAACCATCAAAGTGTACCTACACTG CAATTGCAGAATCTCCAGCAGCTTGCACACAGCAGCTCCTCCAGGAAATC AAAAAGGATGCGGGGGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65863:623..1093-

>mRNA_M-pyrifera_M_contig65863.15996.1 ID=mRNA_M-pyrifera_M_contig65863.15996.1|Name=mRNA_M-pyrifera_M_contig65863.15996.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig65863:623..1093- (Macrocystis pyrifera P11B4 male)
GTGTTGGAGGAATTGAGGAAAGAATTGAGGGACATGGAGAGGCAATTGCG
TGACGCAGAAGATGGGTTGAAGAAGAAGCAAGACAAGCAAAATCGAGAGT
ATGGAACAGATGGAGCATGGTACCCTCTGGGTGAAAAGTGCTTCGAGTCT
TCCATCTCCAAGTACCGTTACAAGATTTGTCCGTTTGAGCGAGCAACGCA
AGATTCCACATCACTGGGATCCTTCCACAAGTGGCGTGTGTCACCCTCCG
AATCCACACCTTCCAATCCTCCAGTCATGGAGTTCACCAACGGAGCGCAC
TGCTGGCAAGGTCCCCAACGCTCCCTTGCACTCACCTTCAAGTGTGGACC
CGTAGAAAAGATTCTCTCCGTCGACGAACCATCAAAGTGTACCTACACTG
CAATTGCAGAATCTCCAGCAGCTTGCACACAGCAGCTCCTCCAGGAAATC
AAAAAGGATGCGGGGGTGTGAGTGTTGGAGGAATTGAGGAAAGAATTGAG
GGACATGGAGAGGCAATTGCGTGACGCAGAAGATGGGTTGAAGAAGAAGC
AAGACAAGCAAAATCGAGAGTATGGAACAGATGGAGCATGGTACCCTCTG
GGTGAAAAGTGCTTCGAGTCTTCCATCTCCAAGTACCGTTACAAGATTTG
TCCGTTTGAGCGAGCAACGCAAGATTCCACATCACTGGGATCCTTCCACA
AGTGGCGTGTGTCACCCTCCGAATCCACACCTTCCAATCCTCCAGTCATG
GAGTTCACCAACGGAGCGCACTGCTGGCAAGGTCCCCAACGCTCCCTTGC
ACTCACCTTCAAGTGTGGACCCGTAGAAAAGATTCTCTCCGTCGACGAAC
CATCAAAGTGTACCTACACTGCAATTGCAGAATCTCCAGCAGCTTGCACA
CAGCAGCTCCTCCAGGAAATCAAAAAGGATGCGGGGGTGTGA
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