mRNA_M-pyrifera_M_contig65810.15986.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65810.15986.1
Unique NamemRNA_M-pyrifera_M_contig65810.15986.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65810.15986.1 vs. uniprot
Match: D7FH17_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH17_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 6.250e-24
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 SWFEQYRRLAKLNLQAHQSAMARSDEYVLESLLTFDKLGVVVHELLAIEAWKE 159
            SWFEQ RRLAKLNLQAHQSAMARSDEYVLE+LLTFDKLGVVVHELLAIEAWKE
Sbjct:   65 SWFEQNRRLAKLNLQAHQSAMARSDEYVLEALLTFDKLGVVVHELLAIEAWKE 117
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BLAST of mRNA_M-pyrifera_M_contig65810.15986.1 vs. uniprot
Match: A0A835ZG21_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG21_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.490e-15
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 SWFEQYRRLAKLNLQAHQSAMARSDEYVLESLLTFDKLGVVVHELLAIEAWKE 159
            +W +Q++RL KLNLQAHQSAMAR+DEYVLE+L TF K+ ++V ELL +EAWKE
Sbjct:   63 AWLDQHQRLVKLNLQAHQSAMARADEYVLEALQTFGKVPLLVRELLLVEAWKE 115
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BLAST of mRNA_M-pyrifera_M_contig65810.15986.1 vs. uniprot
Match: UPI000D1C41A9 (zinc finger MYND domain-containing protein 10-like isoform X1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C41A9)

HSP 1 Score: 75.5 bits (184), Expect = 2.530e-15
Identity = 32/53 (60.38%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 SWFEQYRRLAKLNLQAHQSAMARSDEYVLESLLTFDKLGVVVHELLAIEAWKE 159
            +W +Q+R+L KLNLQAH + +A  DE+++E+LL+F+KLGV++HELLAIE WKE
Sbjct:   39 AWMKQHRKLEKLNLQAHYNTIAHCDEFIMEALLSFEKLGVLIHELLAIEIWKE 91
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BLAST of mRNA_M-pyrifera_M_contig65810.15986.1 vs. uniprot
Match: A0A482SG05_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SG05_9ARCH)

HSP 1 Score: 76.6 bits (187), Expect = 4.640e-15
Identity = 32/53 (60.38%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 SWFEQYRRLAKLNLQAHQSAMARSDEYVLESLLTFDKLGVVVHELLAIEAWKE 159
            +W EQ+R++ KLNLQAH +A++ SDEYV+E++LTF+K+ V++H+LL IEAWKE
Sbjct:   57 AWMEQHRKMEKLNLQAHHNALSNSDEYVMEAILTFNKIPVLIHDLLLIEAWKE 109
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BLAST of mRNA_M-pyrifera_M_contig65810.15986.1 vs. uniprot
Match: A0A7S1T1I3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T1I3_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 3.670e-13
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 WFEQYRRLAKLNLQAHQSAMARSDEYVLESLLTFDKLGVVVHELLAIEAWK 156
            W EQ+  + KLNLQAH +A   SDE+V+ESL++FDK+ V+VHELLAIE WK
Sbjct:   29 WMEQHDWVEKLNLQAHHNAQTHSDEFVMESLVSFDKMSVLVHELLAIEVWK 79
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BLAST of mRNA_M-pyrifera_M_contig65810.15986.1 vs. uniprot
Match: A0A7S2WC37_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WC37_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.450e-13
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    4 WFEQYRRLAKLNLQAHQSAMARSDEYVLESLLTFDKLGVVVHELLAIEAWKE 159
            W +Q+  L KLNLQAH+S  A +D +VLE L+T DKL VV+HELL IEAW+E
Sbjct:   28 WMKQHVLLQKLNLQAHESVQANADNFVLELLVTHDKLTVVLHELLVIEAWRE 79
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BLAST of mRNA_M-pyrifera_M_contig65810.15986.1 vs. uniprot
Match: A0A6S8FW69_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8FW69_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.880e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    4 WFEQYRRLAKLNLQAHQSAMARSDEYVLESLLTFDKLGVVVHELLAIEAWK 156
            WF Q+  + KLNLQAHQS    SD YVLE+++T++KL VVVHEL+ IEAW+
Sbjct:   56 WFSQHMNIQKLNLQAHQSVSMSSDNYVLENMVTYEKLPVVVHELIMIEAWR 106
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BLAST of mRNA_M-pyrifera_M_contig65810.15986.1 vs. uniprot
Match: A0A7S2RNA9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNA9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.510e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    4 WFEQYRRLAKLNLQAHQSAMARSDEYVLESLLTFDKLGVVVHELLAIEAWK 156
            W +Q+  + +LNLQAHQSA  + DE+VLE+LLTFDKL  +VHELL  EAW+
Sbjct:   65 WMKQHEAIEQLNLQAHQSAQQQGDEFVLEALLTFDKLRTLVHELLVTEAWR 115
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BLAST of mRNA_M-pyrifera_M_contig65810.15986.1 vs. uniprot
Match: A0A7S2RRX2_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RRX2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.220e-11
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    4 WFEQYRRLAKLNLQAHQSAMARSDEYVLESLLTFDKLGVVVHELLAIEAWKE 159
            W +Q+  L KLNLQAH+S  A +D +VLE L+T DKL VV+HELL IEAW+E
Sbjct:   28 WMKQHVLLQKLNLQAHESVQANADNFVLELLVTHDKLTVVLHELLVIEAWRE 79
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BLAST of mRNA_M-pyrifera_M_contig65810.15986.1 vs. uniprot
Match: A0A8J2WZ86_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZ86_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.220e-11
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    4 WFEQYRRLAKLNLQAHQSAMARSDEYVLESLLTFDKLGVVVHELLAIEAWKE 159
            W EQ+ ++ KLN QAH SA  +SDE+VLE+ LTFDKLG ++++L+ IE W+E
Sbjct:   63 WLEQHGQIEKLNQQAHASARDKSDEFVLEAFLTFDKLGTLIYDLILIETWRE 114
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65810.15986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH17_ECTSI6.250e-2496.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZG21_9STRA2.490e-1567.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI000D1C41A92.530e-1560.38zinc finger MYND domain-containing protein 10-like... [more]
A0A482SG05_9ARCH4.640e-1560.38Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1T1I3_9CHLO3.670e-1362.75Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S2WC37_9STRA8.450e-1361.54Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A6S8FW69_9STRA1.880e-1260.78Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2RNA9_9STRA3.510e-1260.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RRX2_9STRA1.220e-1161.54Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8J2WZ86_9STRA1.220e-1155.77Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65810contigM-pyrifera_M_contig65810:138..296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog2880.D7FH17
Preferred nameZMYND10
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001578,GO:0003008,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007600,GO:0007605,GO:0008150,GO:0008270,GO:0009987,GO:0010638,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0019230,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0031344,GO:0031346,GO:0032501,GO:0033043,GO:0034451,GO:0034622,GO:0035082,GO:0036158,GO:0036159,GO:0036477,GO:0040011,GO:0043025,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044458,GO:0044459,GO:0044464,GO:0044782,GO:0045177,GO:0045724,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0048870,GO:0050789,GO:0050794,GO:0050877,GO:0050884,GO:0050905,GO:0050954,GO:0051128,GO:0051130,GO:0051179,GO:0051674,GO:0060271,GO:0060491,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0071944,GO:0097458,GO:0097722,GO:0098590,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:1902017,GO:1902115,GO:1902117,GO:1905503,GO:1905505
EggNOG free text desc.positive regulation of motile cilium assembly
EggNOG OGs28JQ5@1,2QS3F@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.8279548-CDS-M-pyrifera_M_contig65810:137..2961622816546.8279548-CDS-M-pyrifera_M_contig65810:137..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65810 138..296 +
1692278039.348666-CDS-M-pyrifera_M_contig65810:137..2961692278039.348666-CDS-M-pyrifera_M_contig65810:137..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65810 138..296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65810.15986.1prot_M-pyrifera_M_contig65810.15986.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65810 138..296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65810.15986.1

>prot_M-pyrifera_M_contig65810.15986.1 ID=prot_M-pyrifera_M_contig65810.15986.1|Name=mRNA_M-pyrifera_M_contig65810.15986.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
SWFEQYRRLAKLNLQAHQSAMARSDEYVLESLLTFDKLGVVVHELLAIEA
WKE
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mRNA from alignment at M-pyrifera_M_contig65810:138..296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65810.15986.1 ID=mRNA_M-pyrifera_M_contig65810.15986.1|Name=mRNA_M-pyrifera_M_contig65810.15986.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig65810:138..296+ (Macrocystis pyrifera P11B4 male)
AGCTGGTTCGAGCAGTATCGGCGACTGGCCAAGCTGAACCTGCAGGCTCA
CCAGAGCGCCATGGCAAGGTCGGATGAGTACGTCTTGGAGTCCCTGCTGA
CGTTCGACAAGCTGGGGGTTGTGGTGCACGAGCTGCTAGCCATCGAGGCT
TGGAAAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65810:138..296+

>mRNA_M-pyrifera_M_contig65810.15986.1 ID=mRNA_M-pyrifera_M_contig65810.15986.1|Name=mRNA_M-pyrifera_M_contig65810.15986.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig65810:138..296+ (Macrocystis pyrifera P11B4 male)
AGCTGGTTCGAGCAGTATCGGCGACTGGCCAAGCTGAACCTGCAGGCTCA
CCAGAGCGCCATGGCAAGGTCGGATGAGTACGTCTTGGAGTCCCTGCTGA
CGTTCGACAAGCTGGGGGTTGTGGTGCACGAGCTGCTAGCCATCGAGGCT
TGGAAAGAGAGCTGGTTCGAGCAGTATCGGCGACTGGCCAAGCTGAACCT
GCAGGCTCACCAGAGCGCCATGGCAAGGTCGGATGAGTACGTCTTGGAGT
CCCTGCTGACGTTCGACAAGCTGGGGGTTGTGGTGCACGAGCTGCTAGCC
ATCGAGGCTTGGAAAGAG
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