mRNA_M-pyrifera_M_contig65757.15972.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A1Y1V7V5_9FUNG (Pseudouridine synthase (Fragment) n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V7V5_9FUNG) HSP 1 Score: 165 bits (417), Expect = 2.450e-43 Identity = 103/307 (33.55%), Postives = 148/307 (48.21%), Query Frame = 1
Query: 1 SVEDHLFEAFQKLNLIKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEV-EVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVL 918
++E HLF+A +KL LI+DR Y+ GRTDKGVSA Q V L+VRS + G S E E + E EMD+V+MLN +LP ++R+L WS I SF+AR+ ++R Y Y F ++ D+ M +A K LEG HDFRNF K+ P + + R + S ++ S + + E++ D+ EI G AFLWHQVR A+L L+G +E ++ ++L+V + K D G+P Y AP+ PLVL
Sbjct: 93 TIEGHLFDALKKLKLIQDRKSCHYSLCGRTDKGVSAFSQIVGLYVRSTLQNDPSKGIYTFEELKDLKKKNIKIENDSMEIINENEDDNNKNNIN---------SNIEPFNESLIKSTEQEMDYVNMLNRILPADIRILAWSPIKPSFNARYGCSYRKYHYFFSGQDLDIELMQKACKKLEGHHDFRNFCKIDPTKPNKFQRTIYSCSIFKASDISEITKSSENKGTSNSSSIVENYHPFDIYVFEIKGMAFLWHQVRCCMAILFLIGKHKENIEIIDKLLNVDDEK----DIGKPIYDLAPEIPLVL 386
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A7S2NXU2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NXU2_9STRA) HSP 1 Score: 163 bits (413), Expect = 1.300e-42 Identity = 110/311 (35.37%), Postives = 143/311 (45.98%), Query Frame = 1
Query: 1 SVEDHLFEAFQKLNLIKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHN--STLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
SVE HLF A +K L+++R Y R GRTDKGVSA GQ + L VRS DG+G +E + VE+ + V EMDF M+NAVLP E+R +GW+ + FSARFSA R YRY F +RN D+ AM + G HDFRN AK+ E R +L ++ GK G+ + + Y EI G AFLWH +R I A+ +VG E + E+LDV G+PSY+ APD PLVL +C
Sbjct: 109 SVEKHLFAALKKCCLVQNRGSCGYTRCGRTDKGVSAFGQVIGLVVRSSIPLVDGNGEEIKESTIPRNNIDELEILMPQKRQSKKQQGKNDDFA----------NENKNVEL-KLKVFKEMDFCKMINAVLPDEIRAIGWAPVSNDFSARFSAKDRTYRYFFAQRNLDIAAMRDGLARIVGSHDFRNLAKMDTEHVSNFCRLILGTKIVEGVPDESSCGKGTGDRYDRR-------------VSYFEIKGQAFLWHMIRCIVAISFMVGKRLEDPSIFDELLDVDRNP------GKPSYMMAPDLPLVLHNC 389
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A1R3J337_COCAP (Pseudouridine synthase I, TruA n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3J337_COCAP) HSP 1 Score: 161 bits (407), Expect = 1.740e-42 Identity = 100/310 (32.26%), Postives = 144/310 (46.45%), Query Frame = 1
Query: 1 SVEDHLFEAFQKLNL-IKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
+VE LF+AF+K L + D+ +LY+R GRTDKGVS++GQ V+LF+RS + D + ++ + EGE+D+V +LN VLP ++R+LGWS + + FSARFS R Y+Y F + N +LPAM A K G HDFRNF K+ R + + ++ G E +C + + GSAFLWHQVR + AVL ++G G E V+ +LD ++ +P Y AP+ PLVL C
Sbjct: 123 TVESELFKAFEKTRLLVGDKKASLYSRCGRTDKGVSSVGQVVALFLRSNLKEADAN------------------------------------------------NKMSGESIPETRTEGEIDYVRVLNRVLPNDIRILGWSPVSVDFSARFSCLAREYKYFFWRGNLNLPAMENAGKKFIGEHDFRNFCKMDAANVHNYRRRVTMFEICSSNMRFEGNE---------------------LCEIRVKGSAFLWHQVRCMVAVLFMIGQGLESVDVIDALLDTQKTPR------KPQYAMAPEIPLVLQSC 357
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A251UZQ3_HELAN (Putative pseudouridine synthase family protein n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UZQ3_HELAN) HSP 1 Score: 157 bits (397), Expect = 5.090e-41 Identity = 107/313 (34.19%), Postives = 148/313 (47.28%), Query Frame = 1
Query: 1 SVEDHLFEAFQKLNLIK-DRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCL---DMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
+VE LF+A QK L+ +R LY+R GRTDKGVS++GQ V+L +RS+++ G + E + G EGE+D+V +LN VLP ++RVLGW P++FSARFS R YRY F + N ++ AM + K L G HDFRNF K+ +A V++ IT + PC + +++I GSAFLWHQVR + AVL LVG G E V+ +LDV + +P Y AP+ PLVL+ C
Sbjct: 122 TVESELFKALQKTRLVLGERKDVLYSRCGRTDKGVSSVGQVVALLLRSKHKEPGG--------------------------------------------------DTSEELLDEGPDEGELDYVRILNGVLPDDIRVLGWCHAPVNFSARFSCLSREYRYFFWRENLNISAMENSCKRLIGEHDFRNFCKMD------------AANVHNYKRRITSFD---------------IFPCNGSDQLLFMKIKGSAFLWHQVRCMVAVLFLVGQGLESPDVIDVLLDVDKTPR------KPQYKMAPEVPLVLYSC 351
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A6A2YVS6_HIBSY (Pseudouridine synthase isoform 3 n=5 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YVS6_HIBSY) HSP 1 Score: 156 bits (395), Expect = 6.720e-41 Identity = 101/310 (32.58%), Postives = 146/310 (47.10%), Query Frame = 1
Query: 1 SVEDHLFEAFQKLNL-IKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
+VE +F+A +K L + DR + Y+R GRTDKGVS++GQ +SLF+RS + D + ++ + +EGE+D+V +LN VLP ++R+LGWS + + FSARFS R Y+Y F + N +LPAM A K G HDFRNF K+ +A V++ IT E S +C +++ GSAFLWHQVR + AVL ++G G E V+ +LD+ + +P Y AP+ PLVL C
Sbjct: 110 TVESEIFKALEKTRLLVGDRKESQYSRCGRTDKGVSSVGQVISLFLRSNLKEIDAN------------------------------------------------NKISGELIPEMQIEGEIDYVRVLNRVLPSDIRILGWSPVSIDFSARFSCLSREYKYFFWRGNLNLPAMENAGKKFIGEHDFRNFCKMD------------AANVHNYRRRITQFEISSSNMRFEGD---------QLCAIKVKGSAFLWHQVRCMVAVLFMIGQGLESVEVIDVLLDIEKTPR------KPQYAMAPEIPLVLQSC 344
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: UPI001068DAAE (tRNA pseudouridine(38/39) synthase-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001068DAAE) HSP 1 Score: 155 bits (393), Expect = 2.000e-40 Identity = 98/310 (31.61%), Postives = 140/310 (45.16%), Query Frame = 1
Query: 1 SVEDHLFEAFQKLNLIKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRA-LLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
++E HLF A QK LIKDR+ Y+R GRTDKGVSA Q +SL +RS GDG + ++ + + E+++V +LN +LP E+RVL W + L F ARFS +R+Y+Y+F ++D+ M +A K G HDFRNF K+ R +LS V + + DMC + + G AFLWHQ+R + A+L LVG E+ ++ MLD+ + RP Y A + PLVL+HC
Sbjct: 105 TIEGHLFNALQKACLIKDRSTCNYSRCGRTDKGVSAFAQVISLEIRSNLDEGDG------------------------------------------VIQKKESNTQQDNSTNKNSFKEEINYVYVLNKLLPDEIRVLAWIPVALDFKARFSCVYRMYKYYFPAGDFDIELMNKAGKRFIGEHDFRNFCKMDVANNVTSFRRNILSVDVQRMNNCSQSE--------------------YDMCVVTVKGMAFLWHQIRCMVAILFLVGQNLEKPEIIDHMLDITKCPR------RPQYSMASEIPLVLFHC 346
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A7J8UC53_9ROSI (PseudoU_synth_1 domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8UC53_9ROSI) HSP 1 Score: 154 bits (388), Expect = 2.630e-40 Identity = 98/310 (31.61%), Postives = 145/310 (46.77%), Query Frame = 1
Query: 1 SVEDHLFEAFQKLNL-IKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
+VE +F+A +K L + D+ + Y+R GRTDKGVS++GQ ++LF+RS + DG+ + + +EGE+D+V +LN VLP ++R+LGWS + + FSARFS R Y+Y F + N +L AM A K G HDFRNF K+ +A V++ IT E S +C +++ GSAFLWHQVR + AVL ++G G E V+ +LD+ + +P Y AP+ PL+L C
Sbjct: 49 TVESEIFKALEKTRLLVGDKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKETDGN------------------------------------------------HKISGELIPEAQIEGEIDYVRVLNRVLPSDIRILGWSPVSIDFSARFSCLAREYKYFFWRGNLNLSAMENAGKKFLGEHDFRNFCKMD------------AANVHNYRRRITQFEISSSNMSFEGG---------QLCAIKVKGSAFLWHQVRCMVAVLFMIGQGLESVDVIDILLDIEKTPR------KPQYAMAPETPLILQSC 283
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A1U8JU69_GOSHI (tRNA pseudouridine(38/39) synthase isoform X1 n=17 Tax=Gossypium TaxID=3633 RepID=A0A1U8JU69_GOSHI) HSP 1 Score: 155 bits (391), Expect = 3.440e-40 Identity = 99/310 (31.94%), Postives = 145/310 (46.77%), Query Frame = 1
Query: 1 SVEDHLFEAFQKLNL-IKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
+VE +F+A +K L + DR + Y+R GRTDKGVS++GQ ++LF+RS + DG+ + + +EGE+D+V +LN VLP ++R+LGWS + + FSARFS R Y+Y F + N +L AM A K G HDFRNF K+ +A V++ IT E S +C +++ GSAFLWHQVR + AVL ++G G E V+ +LD+ + +P Y AP+ PL+L C
Sbjct: 125 TVESEIFKALEKTRLLVGDRKESQYSRCGRTDKGVSSVGQVIALFLRSNLKETDGN------------------------------------------------HKISGELIPEAQIEGEIDYVRVLNRVLPSDIRILGWSPVSIDFSARFSCLAREYKYFFWRGNLNLSAMENAGKKFLGEHDFRNFCKMD------------AANVHNYRRRITQFEISSSNMSFEGG---------QLCAIKVKGSAFLWHQVRCMVAVLFMIGQGLESVDVIDILLDIEKTPR------KPQYAMAPETPLILQSC 359
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: L7MME1_RHIPC (Putative pseudouridylate synthase (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MME1_RHIPC) HSP 1 Score: 154 bits (389), Expect = 6.010e-40 Identity = 106/314 (33.76%), Postives = 140/314 (44.59%), Query Frame = 1
Query: 1 SVEDHLFEAFQKLNLIKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQ-GEPLRALLSARVYH----NSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
+VE LFEA ++ L++DRT A Y R GRTDKGVSA Q +S+ +R+ G G A SE E E+D+V +LN VLPPE+RVL W+ + +FSARF R YRY F + + D+ M A L G HDFRN K+ +R +L ++ S L+ +S D+ LEIVG AFLWHQVR I AVLLL+G E V+ E+LDV + +P Y A + PLVL+ C
Sbjct: 96 TVEAALFEALERTRLLEDRTDAHYHRCGRTDKGVSAFSQVISIDLRTNLSEGVGVFAQEGYQPNS--------------------------------------SEASRTE--------ELDYVKILNGVLPPEIRVLAWAPVDQAFSARFDCRQRTYRYFFPRGSLDVERMCEGAALLVGEHDFRNLCKMDVANGVTNYMRRILRTSIFRWPPSKSPLVASPAGEDSSHTATFHKDGFTEDSYDLLCLEIVGQAFLWHQVRCIVAVLLLIGQRLEEPQVISELLDVAKNPR------KPQYAMAAELPLVLYDC 357
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A1Y1VV42_9FUNG (tRNA pseudouridine synthase (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1VV42_9FUNG) HSP 1 Score: 152 bits (384), Expect = 6.570e-40 Identity = 101/306 (33.01%), Postives = 138/306 (45.10%), Query Frame = 1
Query: 1 SVEDHLFEAFQKLNLIKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVL 918
++E HLF+A LIKDR Y R GRTDKGVSA Q VSL VRS E E V + E E+ + ++LN +LPP++R++ WS + +F+ARF +R Y+Y F + D+P M +AAK L GVHDFRNF K+ P R + +A +Y + L E SP +M E+ G AFLWHQVR +L L+G E ++ +LD+ + L GRPSY A ++PLVL
Sbjct: 76 TIESHLFKALHTAKLIKDRESCRYNRCGRTDKGVSAFCQIVSLCVRSNL---------------------------------------------------PANHEDTEANVKQSQTE-ELAYCTILNRLLPPDIRIISWSPVDKNFNARFHCTYRTYKYFFPAQRLDIPLMQKAAKKLVGVHDFRNFCKIDPLYNSHYRRTVYTAEIYKMNHL----------EKNIKIPTKKSSP-FEMYIFEVCGKAFLWHQVRFFMGILFLIGRHLEEPEIIDTLLDLSKHDNGKL--GRPSYDLADEFPLVL 316 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig65757.15972.1 >prot_M-pyrifera_M_contig65757.15972.1 ID=prot_M-pyrifera_M_contig65757.15972.1|Name=mRNA_M-pyrifera_M_contig65757.15972.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=309bp SVEDHLFEAFQKLNLIKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRback to top mRNA from alignment at M-pyrifera_M_contig65757:16..1317+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig65757.15972.1 ID=mRNA_M-pyrifera_M_contig65757.15972.1|Name=mRNA_M-pyrifera_M_contig65757.15972.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at M-pyrifera_M_contig65757:16..1317+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig65757:16..1317+ >mRNA_M-pyrifera_M_contig65757.15972.1 ID=mRNA_M-pyrifera_M_contig65757.15972.1|Name=mRNA_M-pyrifera_M_contig65757.15972.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1854bp|location=Sequence derived from alignment at M-pyrifera_M_contig65757:16..1317+ (Macrocystis pyrifera P11B4 male)back to top |