mRNA_M-pyrifera_M_contig65757.15972.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65757.15972.1
Unique NamemRNA_M-pyrifera_M_contig65757.15972.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A1Y1V7V5_9FUNG (Pseudouridine synthase (Fragment) n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V7V5_9FUNG)

HSP 1 Score: 165 bits (417), Expect = 2.450e-43
Identity = 103/307 (33.55%), Postives = 148/307 (48.21%), Query Frame = 1
Query:    1 SVEDHLFEAFQKLNLIKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEV-EVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVL 918
            ++E HLF+A +KL LI+DR    Y+  GRTDKGVSA  Q V L+VRS  +     G                                               S  E   E +    E EMD+V+MLN +LP ++R+L WS I  SF+AR+  ++R Y Y F  ++ D+  M +A K LEG HDFRNF K+ P +  +  R + S  ++  S +    +  E++               D+   EI G AFLWHQVR   A+L L+G  +E   ++ ++L+V + K    D G+P Y  AP+ PLVL
Sbjct:   93 TIEGHLFDALKKLKLIQDRKSCHYSLCGRTDKGVSAFSQIVGLYVRSTLQNDPSKGIYTFEELKDLKKKNIKIENDSMEIINENEDDNNKNNIN---------SNIEPFNESLIKSTEQEMDYVNMLNRILPADIRILAWSPIKPSFNARYGCSYRKYHYFFSGQDLDIELMQKACKKLEGHHDFRNFCKIDPTKPNKFQRTIYSCSIFKASDISEITKSSENKGTSNSSSIVENYHPFDIYVFEIKGMAFLWHQVRCCMAILFLIGKHKENIEIIDKLLNVDDEK----DIGKPIYDLAPEIPLVL 386          
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A7S2NXU2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NXU2_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.300e-42
Identity = 110/311 (35.37%), Postives = 143/311 (45.98%), Query Frame = 1
Query:    1 SVEDHLFEAFQKLNLIKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHN--STLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
            SVE HLF A +K  L+++R    Y R GRTDKGVSA GQ + L VRS     DG+G                                               +E + VE+ +  V  EMDF  M+NAVLP E+R +GW+ +   FSARFSA  R YRY F +RN D+ AM      + G HDFRN AK+  E      R +L  ++          GK  G+  +               + Y EI G AFLWH +R I A+  +VG   E   +  E+LDV          G+PSY+ APD PLVL +C
Sbjct:  109 SVEKHLFAALKKCCLVQNRGSCGYTRCGRTDKGVSAFGQVIGLVVRSSIPLVDGNGEEIKESTIPRNNIDELEILMPQKRQSKKQQGKNDDFA----------NENKNVEL-KLKVFKEMDFCKMINAVLPDEIRAIGWAPVSNDFSARFSAKDRTYRYFFAQRNLDIAAMRDGLARIVGSHDFRNLAKMDTEHVSNFCRLILGTKIVEGVPDESSCGKGTGDRYDRR-------------VSYFEIKGQAFLWHMIRCIVAISFMVGKRLEDPSIFDELLDVDRNP------GKPSYMMAPDLPLVLHNC 389          
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A1R3J337_COCAP (Pseudouridine synthase I, TruA n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3J337_COCAP)

HSP 1 Score: 161 bits (407), Expect = 1.740e-42
Identity = 100/310 (32.26%), Postives = 144/310 (46.45%), Query Frame = 1
Query:    1 SVEDHLFEAFQKLNL-IKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
            +VE  LF+AF+K  L + D+  +LY+R GRTDKGVS++GQ V+LF+RS  +  D +                                                ++     +     EGE+D+V +LN VLP ++R+LGWS + + FSARFS   R Y+Y F + N +LPAM  A K   G HDFRNF K+         R +    +  ++    G E                     +C + + GSAFLWHQVR + AVL ++G G E   V+  +LD ++         +P Y  AP+ PLVL  C
Sbjct:  123 TVESELFKAFEKTRLLVGDKKASLYSRCGRTDKGVSSVGQVVALFLRSNLKEADAN------------------------------------------------NKMSGESIPETRTEGEIDYVRVLNRVLPNDIRILGWSPVSVDFSARFSCLAREYKYFFWRGNLNLPAMENAGKKFIGEHDFRNFCKMDAANVHNYRRRVTMFEICSSNMRFEGNE---------------------LCEIRVKGSAFLWHQVRCMVAVLFMIGQGLESVDVIDALLDTQKTPR------KPQYAMAPEIPLVLQSC 357          
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A251UZQ3_HELAN (Putative pseudouridine synthase family protein n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UZQ3_HELAN)

HSP 1 Score: 157 bits (397), Expect = 5.090e-41
Identity = 107/313 (34.19%), Postives = 148/313 (47.28%), Query Frame = 1
Query:    1 SVEDHLFEAFQKLNLIK-DRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCL---DMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
            +VE  LF+A QK  L+  +R   LY+R GRTDKGVS++GQ V+L +RS+++   G                                                  +  E  +  G  EGE+D+V +LN VLP ++RVLGW   P++FSARFS   R YRY F + N ++ AM  + K L G HDFRNF K+             +A V++    IT  +                 PC     + +++I GSAFLWHQVR + AVL LVG G E   V+  +LDV +         +P Y  AP+ PLVL+ C
Sbjct:  122 TVESELFKALQKTRLVLGERKDVLYSRCGRTDKGVSSVGQVVALLLRSKHKEPGG--------------------------------------------------DTSEELLDEGPDEGELDYVRILNGVLPDDIRVLGWCHAPVNFSARFSCLSREYRYFFWRENLNISAMENSCKRLIGEHDFRNFCKMD------------AANVHNYKRRITSFD---------------IFPCNGSDQLLFMKIKGSAFLWHQVRCMVAVLFLVGQGLESPDVIDVLLDVDKTPR------KPQYKMAPEVPLVLYSC 351          
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A6A2YVS6_HIBSY (Pseudouridine synthase isoform 3 n=5 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YVS6_HIBSY)

HSP 1 Score: 156 bits (395), Expect = 6.720e-41
Identity = 101/310 (32.58%), Postives = 146/310 (47.10%), Query Frame = 1
Query:    1 SVEDHLFEAFQKLNL-IKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
            +VE  +F+A +K  L + DR  + Y+R GRTDKGVS++GQ +SLF+RS  +  D +                                                ++     +    +EGE+D+V +LN VLP ++R+LGWS + + FSARFS   R Y+Y F + N +LPAM  A K   G HDFRNF K+             +A V++    IT  E   S                 +C +++ GSAFLWHQVR + AVL ++G G E   V+  +LD+ +         +P Y  AP+ PLVL  C
Sbjct:  110 TVESEIFKALEKTRLLVGDRKESQYSRCGRTDKGVSSVGQVISLFLRSNLKEIDAN------------------------------------------------NKISGELIPEMQIEGEIDYVRVLNRVLPSDIRILGWSPVSIDFSARFSCLSREYKYFFWRGNLNLPAMENAGKKFIGEHDFRNFCKMD------------AANVHNYRRRITQFEISSSNMRFEGD---------QLCAIKVKGSAFLWHQVRCMVAVLFMIGQGLESVEVIDVLLDIEKTPR------KPQYAMAPEIPLVLQSC 344          
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: UPI001068DAAE (tRNA pseudouridine(38/39) synthase-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001068DAAE)

HSP 1 Score: 155 bits (393), Expect = 2.000e-40
Identity = 98/310 (31.61%), Postives = 140/310 (45.16%), Query Frame = 1
Query:    1 SVEDHLFEAFQKLNLIKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRA-LLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
            ++E HLF A QK  LIKDR+   Y+R GRTDKGVSA  Q +SL +RS    GDG                                                 +  ++    +   + E+++V +LN +LP E+RVL W  + L F ARFS  +R+Y+Y+F   ++D+  M +A K   G HDFRNF K+         R  +LS  V   +     +                     DMC + + G AFLWHQ+R + A+L LVG   E+  ++  MLD+ +         RP Y  A + PLVL+HC
Sbjct:  105 TIEGHLFNALQKACLIKDRSTCNYSRCGRTDKGVSAFAQVISLEIRSNLDEGDG------------------------------------------VIQKKESNTQQDNSTNKNSFKEEINYVYVLNKLLPDEIRVLAWIPVALDFKARFSCVYRMYKYYFPAGDFDIELMNKAGKRFIGEHDFRNFCKMDVANNVTSFRRNILSVDVQRMNNCSQSE--------------------YDMCVVTVKGMAFLWHQIRCMVAILFLVGQNLEKPEIIDHMLDITKCPR------RPQYSMASEIPLVLFHC 346          
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A7J8UC53_9ROSI (PseudoU_synth_1 domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8UC53_9ROSI)

HSP 1 Score: 154 bits (388), Expect = 2.630e-40
Identity = 98/310 (31.61%), Postives = 145/310 (46.77%), Query Frame = 1
Query:    1 SVEDHLFEAFQKLNL-IKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
            +VE  +F+A +K  L + D+  + Y+R GRTDKGVS++GQ ++LF+RS  +  DG+                                                 +     +    +EGE+D+V +LN VLP ++R+LGWS + + FSARFS   R Y+Y F + N +L AM  A K   G HDFRNF K+             +A V++    IT  E   S                 +C +++ GSAFLWHQVR + AVL ++G G E   V+  +LD+ +         +P Y  AP+ PL+L  C
Sbjct:   49 TVESEIFKALEKTRLLVGDKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKETDGN------------------------------------------------HKISGELIPEAQIEGEIDYVRVLNRVLPSDIRILGWSPVSIDFSARFSCLAREYKYFFWRGNLNLSAMENAGKKFLGEHDFRNFCKMD------------AANVHNYRRRITQFEISSSNMSFEGG---------QLCAIKVKGSAFLWHQVRCMVAVLFMIGQGLESVDVIDILLDIEKTPR------KPQYAMAPETPLILQSC 283          
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A1U8JU69_GOSHI (tRNA pseudouridine(38/39) synthase isoform X1 n=17 Tax=Gossypium TaxID=3633 RepID=A0A1U8JU69_GOSHI)

HSP 1 Score: 155 bits (391), Expect = 3.440e-40
Identity = 99/310 (31.94%), Postives = 145/310 (46.77%), Query Frame = 1
Query:    1 SVEDHLFEAFQKLNL-IKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
            +VE  +F+A +K  L + DR  + Y+R GRTDKGVS++GQ ++LF+RS  +  DG+                                                 +     +    +EGE+D+V +LN VLP ++R+LGWS + + FSARFS   R Y+Y F + N +L AM  A K   G HDFRNF K+             +A V++    IT  E   S                 +C +++ GSAFLWHQVR + AVL ++G G E   V+  +LD+ +         +P Y  AP+ PL+L  C
Sbjct:  125 TVESEIFKALEKTRLLVGDRKESQYSRCGRTDKGVSSVGQVIALFLRSNLKETDGN------------------------------------------------HKISGELIPEAQIEGEIDYVRVLNRVLPSDIRILGWSPVSIDFSARFSCLAREYKYFFWRGNLNLSAMENAGKKFLGEHDFRNFCKMD------------AANVHNYRRRITQFEISSSNMSFEGG---------QLCAIKVKGSAFLWHQVRCMVAVLFMIGQGLESVDVIDILLDIEKTPR------KPQYAMAPETPLILQSC 359          
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: L7MME1_RHIPC (Putative pseudouridylate synthase (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MME1_RHIPC)

HSP 1 Score: 154 bits (389), Expect = 6.010e-40
Identity = 106/314 (33.76%), Postives = 140/314 (44.59%), Query Frame = 1
Query:    1 SVEDHLFEAFQKLNLIKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQ-GEPLRALLSARVYH----NSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVLWHC 927
            +VE  LFEA ++  L++DRT A Y R GRTDKGVSA  Q +S+ +R+    G G  A                                              SE    E        E+D+V +LN VLPPE+RVL W+ +  +FSARF    R YRY F + + D+  M   A  L G HDFRN  K+         +R +L   ++      S L+      +S                D+  LEIVG AFLWHQVR I AVLLL+G   E   V+ E+LDV +         +P Y  A + PLVL+ C
Sbjct:   96 TVEAALFEALERTRLLEDRTDAHYHRCGRTDKGVSAFSQVISIDLRTNLSEGVGVFAQEGYQPNS--------------------------------------SEASRTE--------ELDYVKILNGVLPPEIRVLAWAPVDQAFSARFDCRQRTYRYFFPRGSLDVERMCEGAALLVGEHDFRNLCKMDVANGVTNYMRRILRTSIFRWPPSKSPLVASPAGEDSSHTATFHKDGFTEDSYDLLCLEIVGQAFLWHQVRCIVAVLLLIGQRLEEPQVISELLDVAKNPR------KPQYAMAAELPLVLYDC 357          
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Match: A0A1Y1VV42_9FUNG (tRNA pseudouridine synthase (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1VV42_9FUNG)

HSP 1 Score: 152 bits (384), Expect = 6.570e-40
Identity = 101/306 (33.01%), Postives = 138/306 (45.10%), Query Frame = 1
Query:    1 SVEDHLFEAFQKLNLIKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYRRGDGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARFSAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLRALLSARVYHNSTLITGKEEGESREXXXXXXXXXXSPCLDMCYLEIVGSAFLWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAPDYPLVL 918
            ++E HLF+A     LIKDR    Y R GRTDKGVSA  Q VSL VRS                                                         E  E  V +   E E+ + ++LN +LPP++R++ WS +  +F+ARF   +R Y+Y F  +  D+P M +AAK L GVHDFRNF K+ P       R + +A +Y  + L          E          SP  +M   E+ G AFLWHQVR    +L L+G   E   ++  +LD+ +     L  GRPSY  A ++PLVL
Sbjct:   76 TIESHLFKALHTAKLIKDRESCRYNRCGRTDKGVSAFCQIVSLCVRSNL---------------------------------------------------PANHEDTEANVKQSQTE-ELAYCTILNRLLPPDIRIISWSPVDKNFNARFHCTYRTYKYFFPAQRLDIPLMQKAAKKLVGVHDFRNFCKIDPLYNSHYRRTVYTAEIYKMNHL----------EKNIKIPTKKSSP-FEMYIFEVCGKAFLWHQVRFFMGILFLIGRHLEEPEIIDTLLDLSKHDNGKL--GRPSYDLADEFPLVL 316          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65757.15972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1V7V5_9FUNG2.450e-4333.55Pseudouridine synthase (Fragment) n=1 Tax=Piromyce... [more]
A0A7S2NXU2_9STRA1.300e-4235.37Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1R3J337_COCAP1.740e-4232.26Pseudouridine synthase I, TruA n=2 Tax=Corchorus T... [more]
A0A251UZQ3_HELAN5.090e-4134.19Putative pseudouridine synthase family protein n=2... [more]
A0A6A2YVS6_HIBSY6.720e-4132.58Pseudouridine synthase isoform 3 n=5 Tax=Hibiscus ... [more]
UPI001068DAAE2.000e-4031.61tRNA pseudouridine(38/39) synthase-like n=1 Tax=De... [more]
A0A7J8UC53_9ROSI2.630e-4031.61PseudoU_synth_1 domain-containing protein n=2 Tax=... [more]
A0A1U8JU69_GOSHI3.440e-4031.94tRNA pseudouridine(38/39) synthase isoform X1 n=17... [more]
L7MME1_RHIPC6.010e-4033.76Putative pseudouridylate synthase (Fragment) n=1 T... [more]
A0A1Y1VV42_9FUNG6.570e-4033.01tRNA pseudouridine synthase (Fragment) n=1 Tax=Ana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65757contigM-pyrifera_M_contig65757:16..1317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score155.2
Seed ortholog evalue4.9e-35
Seed eggNOG ortholog246437.XP_006140667.1
Preferred namePUS3
KEGG koko:K01855
Hectar predicted targeting categoryother localisation
GOsGO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481
EggNOG free text desc.mRNA pseudouridine synthesis
EggNOG OGs35D51@314146,38DRB@33154,3B9CT@33208,3CZ92@33213,3JCS8@40674,485W9@7711,492YN@7742,COG0101@1,KOG2554@2759
EC5.4.99.45
COG Functional cat.J
Best tax levelEuarchontoglires
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons3
Model size927
Cds size927
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65757.15972.1prot_M-pyrifera_M_contig65757.15972.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65757 16..1317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.7297382-CDS-M-pyrifera_M_contig65757:15..1691622816545.7297382-CDS-M-pyrifera_M_contig65757:15..169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65757 16..169 +
1692278038.660904-CDS-M-pyrifera_M_contig65757:15..1691692278038.660904-CDS-M-pyrifera_M_contig65757:15..169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65757 16..169 +
1622816545.7427025-CDS-M-pyrifera_M_contig65757:439..9871622816545.7427025-CDS-M-pyrifera_M_contig65757:439..987Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65757 440..987 +
1692278038.676501-CDS-M-pyrifera_M_contig65757:439..9871692278038.676501-CDS-M-pyrifera_M_contig65757:439..987Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65757 440..987 +
1622816545.7561758-CDS-M-pyrifera_M_contig65757:1092..13171622816545.7561758-CDS-M-pyrifera_M_contig65757:1092..1317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65757 1093..1317 +
1692278038.6879377-CDS-M-pyrifera_M_contig65757:1092..13171692278038.6879377-CDS-M-pyrifera_M_contig65757:1092..1317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65757 1093..1317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65757.15972.1

>prot_M-pyrifera_M_contig65757.15972.1 ID=prot_M-pyrifera_M_contig65757.15972.1|Name=mRNA_M-pyrifera_M_contig65757.15972.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=309bp
SVEDHLFEAFQKLNLIKDRTWALYARAGRTDKGVSALGQTVSLFVRSRYR
RGDGSGAAAAAAASTLSSSSSSTSSSSSSSSSSSSSSSSSSSSSSSSSSP
PSSSEFEEVEVVRGGVEGEMDFVSMLNAVLPPEVRVLGWSDIPLSFSARF
SAAFRVYRYHFLKRNYDLPAMARAAKYLEGVHDFRNFAKLQPEQQGEPLR
ALLSARVYHNSTLITGKEEGESRERTETEGEGEGSPCLDMCYLEIVGSAF
LWHQVRNISAVLLLVGMGREREGVVREMLDVREGKEFGLDRGRPSYLSAP
DYPLVLWHC
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mRNA from alignment at M-pyrifera_M_contig65757:16..1317+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65757.15972.1 ID=mRNA_M-pyrifera_M_contig65757.15972.1|Name=mRNA_M-pyrifera_M_contig65757.15972.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at M-pyrifera_M_contig65757:16..1317+ (Macrocystis pyrifera P11B4 male)
AGTGTGGAAGACCACTTGTTCGAGGCGTTCCAGAAGCTGAACCTCATCAA GGACAGAACGTGGGCCTTGTATGCGAGAGCTGGGCGGACGGACAAGGGTG TGTCTGCATTGGGTCAAACTGTGTCTCTCTTCGTTCGATCCAGGTACAGG AGGGGTGAGGACAAGTGGGGCAAGCTGGCCAAGGGGAAGAAGGGCAAGAA AGGGGAGAAGAAAGAAGCAGGGGGTGGAGCCTCCAGACCAACGCCTTCCT CCACATCCCCACTCTCCTCCTACATCTTCCGAAGGAAAAAAGGAAGCGTC TACGGGCAAGTGTCATGCAAACGAACGTGGAGCGGAGAAGGAGCAAGTGA GGAGGAAAGGGGTGGAGGGGGGGTGGAAGGAGAAGAGGGGAAGGGAGGAA GGGGTGGAGGGGGTGGAGAAGGAGGAGATGGAAGTGGGGCAGCAGCAGCA GCAGCAGCATCAACTTTATCTTCATCCTCATCATCAACTTCTTCATCATC CTCCTCATCCTCCTCATCCTCTTCTTCATCTTCATCATCTTCCTCCTCCT CATCATCCTCATCTTCTCCTCCTTCTTCTTCGGAGTTTGAGGAGGTGGAG GTTGTTCGTGGCGGGGTGGAGGGTGAGATGGACTTTGTGTCGATGCTGAA CGCCGTGTTGCCTCCTGAGGTGCGGGTGTTGGGGTGGAGTGACATCCCAC TCTCTTTCTCTGCCAGATTCTCTGCTGCGTTCCGCGTGTATCGCTACCAC TTCCTCAAGCGAAACTACGACCTCCCCGCCATGGCCAGAGCTGCCAAGTA CCTCGAAGGAGTGCACGACTTTCGCAACTTTGCAAAGCTCCAGCCCGAAC AGCAAGGAGAACCTCTCAGAGCCCTGCTAAGCGCAAGAGTGTACCACAAC TCCACCCTCATCACCGGAAAAGAAGAAGGAGAAAGCAGAGAAAGGACAGA AACGGAAGGAGAAGGGGAAGGGGTGGGGTTGTCGGCGGCAGCGTCGTCGT CTTCTTCATCTTCTTCATCTTCTTCCTCATCCTCCTCTTCCTCATCCTCC TCCCCTCCTACCCCCTGTTCGTTGGAGTCTCCTTGTTTGGACATGTGCTA CTTGGAGATCGTGGGGAGTGCGTTCCTGTGGCACCAAGTGCGGAACATTT CGGCAGTGCTGTTGCTGGTGGGGATGGGCAGGGAGCGAGAGGGGGTGGTG CGAGAGATGCTGGATGTGCGAGAAGGCAAGGAGTTTGGGTTGGATCGCGG ACGGCCCTCGTATCTTTCCGCGCCTGATTACCCTCTGGTGCTGTGGCACT GT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65757:16..1317+

>mRNA_M-pyrifera_M_contig65757.15972.1 ID=mRNA_M-pyrifera_M_contig65757.15972.1|Name=mRNA_M-pyrifera_M_contig65757.15972.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1854bp|location=Sequence derived from alignment at M-pyrifera_M_contig65757:16..1317+ (Macrocystis pyrifera P11B4 male)
AGTGTGGAAGACCACTTGTTCGAGGCGTTCCAGAAGCTGAACCTCATCAA
GGACAGAACGTGGGCCTTGTATGCGAGAGCTGGGCGGACGGACAAGGGTG
TGTCTGCATTGGGTCAAACTGTGTCTCTCTTCGTTCGATCCAGGTACAGG
AGGGAGTGTGGAAGACCACTTGTTCGAGGCGTTCCAGAAGCTGAACCTCA
TCAAGGACAGAACGTGGGCCTTGTATGCGAGAGCTGGGCGGACGGACAAG
GGTGTGTCTGCATTGGGTCAAACTGTGTCTCTCTTCGTTCGATCCAGGTA
CAGGAGGGGAGATGGAAGTGGGGCAGCAGCAGCAGCAGCAGCATCAACTT
TATCTTCATCCTCATCATCAACTTCTTCATCATCCTCCTCATCCTCCTCA
TCCTCTTCTTCATCTTCATCATCTTCCTCCTCCTCATCATCCTCATCTTC
TCCTCCTTCTTCTTCGGAGTTTGAGGAGGTGGAGGTTGTTCGTGGCGGGG
TGGAGGGTGAGATGGACTTTGTGTCGATGCTGAACGCCGTGTTGCCTCCT
GAGGTGCGGGTGTTGGGGTGGAGTGACATCCCACTCTCTTTCTCTGCCAG
ATTCTCTGCTGCGTTCCGCGTGTATCGCTACCACTTCCTCAAGCGAAACT
ACGACCTCCCCGCCATGGCCAGAGCTGCCAAGTACCTCGAAGGAGTGCAC
GACTTTCGCAACTTTGCAAAGCTCCAGCCCGAACAGCAAGGAGAACCTCT
CAGAGCCCTGCTAAGCGCAAGAGTGTACCACAACTCCACCCTCATCACCG
GAAAAGAAGAAGGAGAAAGCAGAGAAAGGACAGAAACGGAAGGAGAAGGG
GAAGGGGAGATGGAAGTGGGGCAGCAGCAGCAGCAGCAGCATCAACTTTA
TCTTCATCCTCATCATCAACTTCTTCATCATCCTCCTCATCCTCCTCATC
CTCTTCTTCATCTTCATCATCTTCCTCCTCCTCATCATCCTCATCTTCTC
CTCCTTCTTCTTCGGAGTTTGAGGAGGTGGAGGTTGTTCGTGGCGGGGTG
GAGGGTGAGATGGACTTTGTGTCGATGCTGAACGCCGTGTTGCCTCCTGA
GGTGCGGGTGTTGGGGTGGAGTGACATCCCACTCTCTTTCTCTGCCAGAT
TCTCTGCTGCGTTCCGCGTGTATCGCTACCACTTCCTCAAGCGAAACTAC
GACCTCCCCGCCATGGCCAGAGCTGCCAAGTACCTCGAAGGAGTGCACGA
CTTTCGCAACTTTGCAAAGCTCCAGCCCGAACAGCAAGGAGAACCTCTCA
GAGCCCTGCTAAGCGCAAGAGTGTACCACAACTCCACCCTCATCACCGGA
AAAGAAGAAGGAGAAAGCAGAGAAAGGACAGAAACGGAAGGAGAAGGGGA
AGGGTCTCCTTGTTTGGACATGTGCTACTTGGAGATCGTGGGGAGTGCGT
TCCTGTGGCACCAAGTGCGGAACATTTCGGCAGTGCTGTTGCTGGTGGGG
ATGGGCAGGGAGCGAGAGGGGGTGGTGCGAGAGATGCTGGATGTGCGAGA
AGGCAAGGAGTTTGGGTTGGATCGCGGACGGCCCTCGTATCTTTCCGCGC
CTGATTACCCTCTGGTGCTGTGGCACTGTTCTCCTTGTTTGGACATGTGC
TACTTGGAGATCGTGGGGAGTGCGTTCCTGTGGCACCAAGTGCGGAACAT
TTCGGCAGTGCTGTTGCTGGTGGGGATGGGCAGGGAGCGAGAGGGGGTGG
TGCGAGAGATGCTGGATGTGCGAGAAGGCAAGGAGTTTGGGTTGGATCGC
GGACGGCCCTCGTATCTTTCCGCGCCTGATTACCCTCTGGTGCTGTGGCA
CTGT
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