mRNA_M-pyrifera_M_contig107344.1569.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107344.1569.1
Unique NamemRNA_M-pyrifera_M_contig107344.1569.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107344.1569.1 vs. uniprot
Match: A0A3D5DDB1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DDB1_9GAMM)

HSP 1 Score: 63.2 bits (152), Expect = 1.960e-9
Identity = 43/146 (29.45%), Postives = 63/146 (43.15%), Query Frame = 1 
Query:   40 CSSVTFKRGATPTTMATDERRCRKENPADGAFRACMRDQGWFVAGGADATPTPASDRTGEHTSPLARVIDFSAPIPAAPAQAPTPATTPTMSTQSQXXXXXXXXTTATPRQRQLPPTLIGVASWWKFGGTAGGLDADIAACTNKLG 477
            CSS+++KRGATP  M  DE  C  E+  D  F++CMR+ GWF+A  +    T    +       L + +           +    A  P + T+                Q      +  +ASWWK G TA  L+ D+A C  +LG
Sbjct:    3 CSSISYKRGATPEEMTKDENICFAESILDSEFQSCMRNNGWFIADASAIVKTIEVTKNLTEAKALRQHVGVRKKNSKIAERI---AIIPDVRTEVDLVEPKV-------NQGNNNKIMRSIASWWKIGDTANNLERDMAECAGRLG 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107344.1569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3D5DDB1_9GAMM1.960e-929.45Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107344contigM-pyrifera_M_contig107344:3..560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.267275-CDS-M-pyrifera_M_contig107344:2..1071622815583.267275-CDS-M-pyrifera_M_contig107344:2..107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107344 3..107 -
1692277474.3544252-CDS-M-pyrifera_M_contig107344:2..1071692277474.3544252-CDS-M-pyrifera_M_contig107344:2..107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107344 3..107 -
1622815583.2810144-CDS-M-pyrifera_M_contig107344:176..5601622815583.2810144-CDS-M-pyrifera_M_contig107344:176..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107344 177..560 -
1692277474.3623412-CDS-M-pyrifera_M_contig107344:176..5601692277474.3623412-CDS-M-pyrifera_M_contig107344:176..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107344 177..560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107344.1569.1prot_M-pyrifera_M_contig107344.1569.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107344 3..560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107344.1569.1

>prot_M-pyrifera_M_contig107344.1569.1 ID=prot_M-pyrifera_M_contig107344.1569.1|Name=mRNA_M-pyrifera_M_contig107344.1569.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
LIALVIASALVAGCSSVTFKRGATPTTMATDERRCRKENPADGAFRACMR
DQGWFVAGGADATPTPASDRTGEHTSPLARVIDFSAPIPAAPAQAPTPAT
TPTMSTQSQAPATSPAATTATPRQRQLPPTLIGVASWWKFGGTAGGLDAD
IAACTNKLGNGHR
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mRNA from alignment at M-pyrifera_M_contig107344:3..560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107344.1569.1 ID=mRNA_M-pyrifera_M_contig107344.1569.1|Name=mRNA_M-pyrifera_M_contig107344.1569.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig107344:3..560- (Macrocystis pyrifera P11B4 male)
CTGATCGCGCTCGTGATCGCAAGCGCGCTCGTGGCCGGCTGTTCCTCGGT
GACGTTCAAGCGCGGCGCCACCCCGACGACGATGGCCACCGATGAGCGCC
GCTGTCGCAAGGAGAATCCGGCCGACGGTGCATTCCGCGCCTGCATGCGC
GATCAGGGCTGGTTCGTCGCCGGCGGTGCCGATGCGACCCCGACGCCGGC
GTCGGATCGCACCGGTGAGCACACCTCGCCGCTGGCGCGAGTGATCGATT
TCAGCGCGCCCATCCCCGCCGCCCCGGCGCAAGCCCCCACGCCGGCAACA
ACCCCAACCATGTCGACACAATCGCAAGCCCCCGCGACGTCCCCCGCTGC
AACGACCGCGACACCGCGGCAGCGGCAGTTGCCTGTGGCCGCGGTTGTGT
CGGCGCCATCATCGCCCGCTGCGGCACCCGAACCGGTGCCGATCGCCTCG
GAGCCAACCCTGATCGGCGTAGCCAGCTGGTGGAAATTCGGTGGCACCGC
CGGCGGACTCGACGCTGACATCGCCGCGTGCACGAACAAGCTTGGCAACG
GCCACCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107344:3..560-

>mRNA_M-pyrifera_M_contig107344.1569.1 ID=mRNA_M-pyrifera_M_contig107344.1569.1|Name=mRNA_M-pyrifera_M_contig107344.1569.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig107344:3..560- (Macrocystis pyrifera P11B4 male)
CTGATCGCGCTCGTGATCGCAAGCGCGCTCGTGGCCGGCTGTTCCTCGGT
GACGTTCAAGCGCGGCGCCACCCCGACGACGATGGCCACCGATGAGCGCC
GCTGTCGCAAGGAGAATCCGGCCGACGGTGCATTCCGCGCCTGCATGCGC
GATCAGGGCTGGTTCGTCGCCGGCGGTGCCGATGCGACCCCGACGCCGGC
GTCGGATCGCACCGGTGAGCACACCTCGCCGCTGGCGCGAGTGATCGATT
TCAGCGCGCCCATCCCCGCCGCCCCGGCGCAAGCCCCCACGCCGGCAACA
ACCCCAACCATGTCGACACAATCGCAAGCCCCCGCGACGTCCCCCGCTGC
AACGACCGCGACACCGCGGCAGCGGCAGTTGCCTCTGATCGCGCTCGTGA
TCGCAAGCGCGCTCGTGGCCGGCTGTTCCTCGGTGACGTTCAAGCGCGGC
GCCACCCCGACGACGATGGCCACCGATGAGCGCCGCTGTCGCAAGGAGAA
TCCGGCCGACGGTGCATTCCGCGCCTGCATGCGCGATCAGGGCTGGTTCG
TCGCCGGCGGTGCCGATGCGACCCCGACGCCGGCGTCGGATCGCACCGGT
GAGCACACCTCGCCGCTGGCGCGAGTGATCGATTTCAGCGCGCCCATCCC
CGCCGCCCCGGCGCAAGCCCCCACGCCGGCAACAACCCCAACCATGTCGA
CACAATCGCAAGCCCCCGCGACGTCCCCCGCTGCAACGACCGCGACACCG
CGGCAGCGGCAGTTGCCTCCAACCCTGATCGGCGTAGCCAGCTGGTGGAA
ATTCGGTGGCACCGCCGGCGGACTCGACGCTGACATCGCCGCGTGCACGA
ACAAGCTTGGCAACGGCCACCGCCCAACCCTGATCGGCGTAGCCAGCTGG
TGGAAATTCGGTGGCACCGCCGGCGGACTCGACGCTGACATCGCCGCGTG
CACGAACAAGCTTGGCAACGGCCACCGC
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