mRNA_M-pyrifera_M_contig100671.154.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100671.154.1
Unique NamemRNA_M-pyrifera_M_contig100671.154.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100671.154.1 vs. uniprot
Match: A0A7Y5SPQ0_9BACT (Peptidylamidoglycolate lyase n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SPQ0_9BACT)

HSP 1 Score: 111 bits (278), Expect = 6.060e-28
Identity = 46/75 (61.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 GNPPHDQILIRFDTTGRALELWGFPLAKDGELEPGHLDWMHGMGMDNAGNLYISDVDENSPVHRLQKFKRLPAER 225
            GNPP DQ++++F+T GRALELW FPLA+ G++ PG +DW+HG+  D+ GNLY+ DV + SP HR+QKF RLPAER
Sbjct:  263 GNPPTDQLVLKFNTEGRALELWTFPLAQPGKMIPGEIDWIHGIAADSTGNLYLGDVADESPEHRVQKFIRLPAER 337          
BLAST of mRNA_M-pyrifera_M_contig100671.154.1 vs. uniprot
Match: A0A7Y5CCL6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CCL6_9BACT)

HSP 1 Score: 106 bits (264), Expect = 8.010e-26
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 GNPPHDQILIRFDTTGRALELWGFPLAKDGELEPGHLDWMHGMGMDNAGNLYISDVDENSPVHRLQKFKRLPAE 222
            GNPPHDQI+++FDTTGRALE W FPL  DG   PG   W+HG  +D+ GNLY+SDV +    HR+QKF+RL AE
Sbjct:  274 GNPPHDQIVMKFDTTGRALEQWAFPLCADGNWIPGMTAWVHGTAIDSKGNLYLSDVADEDKTHRVQKFRRLNAE 347          
BLAST of mRNA_M-pyrifera_M_contig100671.154.1 vs. uniprot
Match: A0A7C7V5T9_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7V5T9_9PLAN)

HSP 1 Score: 79.3 bits (194), Expect = 9.700e-16
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 GNPPHDQILIRFDTTGRALELWGFPLAKDGELEPGHLDWMHGMGMDNAGNLYISDVDENSPVHRLQKFKR 210
            G PP DQ+ ++FDTTGR L+LW  P  +DG+ +PG L+W+HG+ +D+ GN+Y +D+       R+QKF R
Sbjct:  292 GCPPKDQLFMKFDTTGRVLQLWTVPKGEDGQEKPGELNWVHGIAVDSQGNIYATDI----LGRRVQKFVR 357          
BLAST of mRNA_M-pyrifera_M_contig100671.154.1 vs. uniprot
Match: A0A7C5BWV6_9BACT (Peptidylamidoglycolate lyase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C5BWV6_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 1.470e-15
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    7 PPHDQILIRFDTTGRALELWGFPLAKDGELEPGHLDWMHGMGMDNAGNLYISDVDENSPVHRLQKFKR 210
            PP DQ++ RFDTTGR L+LW  P  +DG+ +PG ++W+HG+ +D+ GN+Y+ D+       R+QKF R
Sbjct:  307 PPKDQLIARFDTTGRMLQLWTIPKGEDGKEQPGEVNWVHGIALDSKGNVYLGDIVGK----RVQKFVR 370          
BLAST of mRNA_M-pyrifera_M_contig100671.154.1 vs. uniprot
Match: A0A7V4M3G3_9BACT (6-bladed beta-propeller n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4M3G3_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 8.740e-15
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 GNPPHDQILIRFDTTGRALELWGFPLAKDGELEPGHLDWMHGMGMDNAGNLYISDVDENSPVHRLQKF 204
            G PP DQ++++FDTTGR L+LW FP  +DG+ +PG L+W+H + +D  GNL + D+       R QKF
Sbjct:  281 GCPPKDQLVMKFDTTGRVLQLWTFPKGEDGKEKPGELNWLHAVAVDARGNLLVGDIKGQ----RAQKF 344          
BLAST of mRNA_M-pyrifera_M_contig100671.154.1 vs. uniprot
Match: A0A2E3MQU9_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3MQU9_9PLAN)

HSP 1 Score: 76.6 bits (187), Expect = 1.110e-14
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 GNPPHDQILIRFDTTGRALELWGFPLAK---DGELEPGHLDWMHGMGMDNAGNLYISDVDENSPVHRLQKFKRLP 216
            G PP DQ++++ DTTGR L  W FPL +   D +  PG L W+HGMG+D+ GNLY+ D+       R+Q+F R+P
Sbjct:  325 GIPPKDQLVMKLDTTGRILSWWQFPLGRWGADKQARPGTLAWVHGMGIDSNGNLYLGDIMGK----RVQRFDRVP 395          
BLAST of mRNA_M-pyrifera_M_contig100671.154.1 vs. uniprot
Match: A0A847GW35_9BACT (Uncharacterized protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GW35_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 1.190e-14
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    7 PPHDQILIRFDTTGRALELWGFPLAKDGELEPGHLDWMHGMGMDNAGNLYISDVDENSPVHRLQKFKR 210
            PP DQ+++RFD TGR  +LW  P   DGE +PG L+W+HG+ +D  GN+Y +D+       R QKF R
Sbjct:  280 PPKDQLIVRFDVTGRVRQLWTVPKGADGEEQPGELNWVHGIAVDRQGNIYATDIIGE----RAQKFVR 343          
BLAST of mRNA_M-pyrifera_M_contig100671.154.1 vs. uniprot
Match: A0A2V5NXD0_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5NXD0_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 5.030e-14
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 GNPPHDQILIRFDTTGRALELWGFPLAKDGELEPGHLDWMHGMGMDNAGNLYISDVDENSPVHRLQKFKR 210
            G PP DQ+ ++F+T+G+ L+LW  P A+DG+  PG  +W+H + +D+ GN+Y  D+       R QKF R
Sbjct:   29 GCPPKDQLFMKFNTSGKLLQLWSVPKAEDGKERPGECNWVHCLALDSKGNIYAGDIVGK----RAQKFVR 94          
BLAST of mRNA_M-pyrifera_M_contig100671.154.1 vs. uniprot
Match: A0A836VUU5_9PLAN (Peptidylamidoglycolate lyase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836VUU5_9PLAN)

HSP 1 Score: 73.9 bits (180), Expect = 6.050e-14
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    7 PPHDQILIRFDTTGRALELWGFPLAKDGELEPGHLDWMHGMGMDNAGNLYISDVDENSPVHRLQKFKR 210
            PP DQI ++FD +GR L+LW  P   DG+  PG L+W+HG+ +D+ GN+Y  D++      R+QKF R
Sbjct:  235 PPKDQIFMKFDPSGRLLQLWTVPKGIDGQERPGELNWVHGIAVDSKGNIYAGDINGR----RVQKFVR 298          
BLAST of mRNA_M-pyrifera_M_contig100671.154.1 vs. uniprot
Match: A0A5C6C0X2_9BACT (NHL repeat protein n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6C0X2_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 2.170e-13
Identity = 24/54 (44.44%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    7 PPHDQILIRFDTTGRALELWGFPLAKDGELEPGHLDWMHGMGMDNAGNLYISDV 168
            PP DQ+L++F+T G+ L+LW  P  +DG+ +PG ++W+HG+ +D+ GN+Y+ D+
Sbjct:  279 PPKDQVLMKFNTKGKVLQLWTIPKGEDGKEQPGDVNWLHGLALDSHGNIYVGDI 332          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100671.154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A7Y5SPQ0_9BACT6.060e-2861.33Peptidylamidoglycolate lyase n=1 Tax=Pirellulales ... [more]
A0A7Y5CCL6_9BACT8.010e-2660.81Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C7V5T9_9PLAN9.700e-1647.14Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A7C5BWV6_9BACT1.470e-1547.06Peptidylamidoglycolate lyase n=1 Tax=Planctomycete... [more]
A0A7V4M3G3_9BACT8.740e-1547.066-bladed beta-propeller n=1 Tax=Planctomycetes bac... [more]
A0A2E3MQU9_9PLAN1.110e-1446.67Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A847GW35_9BACT1.190e-1447.06Uncharacterized protein n=1 Tax=Candidatus Anammox... [more]
A0A2V5NXD0_9BACT5.030e-1441.43Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A836VUU5_9PLAN6.050e-1445.59Peptidylamidoglycolate lyase n=1 Tax=Planctomyceta... [more]
A0A5C6C0X2_9BACT2.170e-1344.44NHL repeat protein n=1 Tax=Novipirellula galeiform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100671contigM-pyrifera_M_contig100671:2..229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.153595-CDS-M-pyrifera_M_contig100671:1..2291622815504.153595-CDS-M-pyrifera_M_contig100671:1..229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100671 2..229 +
1692277441.0418432-CDS-M-pyrifera_M_contig100671:1..2291692277441.0418432-CDS-M-pyrifera_M_contig100671:1..229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100671 2..229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100671.154.1prot_M-pyrifera_M_contig100671.154.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100671 2..229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100671.154.1

>prot_M-pyrifera_M_contig100671.154.1 ID=prot_M-pyrifera_M_contig100671.154.1|Name=mRNA_M-pyrifera_M_contig100671.154.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
GNPPHDQILIRFDTTGRALELWGFPLAKDGELEPGHLDWMHGMGMDNAGN
LYISDVDENSPVHRLQKFKRLPAER*
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mRNA from alignment at M-pyrifera_M_contig100671:2..229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100671.154.1 ID=mRNA_M-pyrifera_M_contig100671.154.1|Name=mRNA_M-pyrifera_M_contig100671.154.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig100671:2..229+ (Macrocystis pyrifera P11B4 male)
GGCAATCCTCCCCACGACCAGATTCTCATCCGCTTTGACACCACGGGGCG CGCCCTGGAACTCTGGGGATTCCCCCTTGCCAAAGACGGCGAGCTGGAGC CAGGCCACCTGGATTGGATGCACGGCATGGGAATGGACAACGCCGGCAAT CTTTATATCAGCGACGTGGATGAGAACAGCCCGGTCCACCGACTACAGAA GTTTAAACGGCTACCCGCAGAACGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100671:2..229+

>mRNA_M-pyrifera_M_contig100671.154.1 ID=mRNA_M-pyrifera_M_contig100671.154.1|Name=mRNA_M-pyrifera_M_contig100671.154.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig100671:2..229+ (Macrocystis pyrifera P11B4 male)
GGCAATCCTCCCCACGACCAGATTCTCATCCGCTTTGACACCACGGGGCG
CGCCCTGGAACTCTGGGGATTCCCCCTTGCCAAAGACGGCGAGCTGGAGC
CAGGCCACCTGGATTGGATGCACGGCATGGGAATGGACAACGCCGGCAAT
CTTTATATCAGCGACGTGGATGAGAACAGCCCGGTCCACCGACTACAGAA
GTTTAAACGGCTACCCGCAGAACGGTAAGGCAATCCTCCCCACGACCAGA
TTCTCATCCGCTTTGACACCACGGGGCGCGCCCTGGAACTCTGGGGATTC
CCCCTTGCCAAAGACGGCGAGCTGGAGCCAGGCCACCTGGATTGGATGCA
CGGCATGGGAATGGACAACGCCGGCAATCTTTATATCAGCGACGTGGATG
AGAACAGCCCGGTCCACCGACTACAGAAGTTTAAACGGCTACCCGCAGAA
CGGTAA
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