mRNA_M-pyrifera_M_contig107037.1503.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107037.1503.1
Unique NamemRNA_M-pyrifera_M_contig107037.1503.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107037.1503.1 vs. uniprot
Match: A0A7S1VUV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VUV2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.300e-16
Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 1 
Query:   52 LTGPYAGFVVEEPPVVGTDEAEWVQRAEEAFTDLSDLGYFKYDVVQP-GRVEDQAATFVRRCVVGEPGVTYKYLGLRVFAYPWDG-------NDLPAGIQEMCSLNNRMVEMT 366
            L   Y GFVV+ P  + + E       E A  ++   G+F+ DV QP G     A T+V RC++G+ G TYKYLGLR+FA+PWDG       N + + I+ M  LN R+ E T
Sbjct:    3 LETAYRGFVVDSPNDLFSSERNHAS-VENALENMQRAGFFRTDVTQPKGFGTKCAKTYVTRCLLGDEGTTYKYLGLRMFAHPWDGAAPNANDNSVESAIKVMHDLNTRLTERT 114
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BLAST of mRNA_M-pyrifera_M_contig107037.1503.1 vs. uniprot
Match: A0A397ENL4_9STRA (FTO_NTD domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ENL4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.620e-16
Identity = 51/122 (41.80%), Postives = 67/122 (54.92%), Query Frame = 1 
Query:    1 TRSERVVKPGEEYYEELLTGPYAGFVVEEPPVVGTDEAEWVQRAEEAFTDLSDLGYFKYDVVQPGRVEDQAATFVRRCVVGEPGVTYKYLGLRVFAYPWDGNDLPAGIQEMCSLNNRMVEMT 366
            T  E+ + P    + ++LT  Y GFV  EP      E     RA  AF  L D GYF+YDVV  G  +  + TFVRR +VG  G+TYKYLGLR+FA+ WD     A  + + +LN  +V  T
Sbjct:   75 TGPEKFLTPSHPDFHDILTRSYVGFV-HEPAAAQPREFHAGMRA--AFEHLRDKGYFQYDVVMAGG-KHLSRTFVRRTLVGNFGITYKYLGLRIFAHAWDIPSSAAVFRNLYALNQAIVART 192
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BLAST of mRNA_M-pyrifera_M_contig107037.1503.1 vs. uniprot
Match: A0A6G0WHV1_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHV1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.930e-16
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1 
Query:   10 ERVVKPGEEYYEELLTGPYAGFVVEEPPVVGTDEAEWVQRAEEAFTDLSDLGYFKYDVVQPGRVEDQAATFVRRCVVGEPGVTYKYLGLRVFAYPWDGNDLPAGIQEMCSLNNRMVEMT 366
            E+ + P    + E+L   Y GFV E    +  D  E ++ A   F  L D  YF+YDVV  G  +  + TFVRR +VG+ G+TYKYLGLR+FA+ WD        + +  LN RM+E T
Sbjct:   78 EKFLTPSHPQFNEILKRSYVGFVHEPGTTLPRDFHEGMRSA---FEKLRDNEYFQYDVVMAGG-KHLSRTFVRRTLVGDYGITYKYLGLRIFAHVWDKPHCAPVFKSLYQLNQRMIERT 192
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BLAST of mRNA_M-pyrifera_M_contig107037.1503.1 vs. uniprot
Match: W4FR64_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR64_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.970e-16
Identity = 51/122 (41.80%), Postives = 67/122 (54.92%), Query Frame = 1 
Query:    1 TRSERVVKPGEEYYEELLTGPYAGFVVEEPPVVGTDEAEWVQRAEEAFTDLSDLGYFKYDVVQPGRVEDQAATFVRRCVVGEPGVTYKYLGLRVFAYPWDGNDLPAGIQEMCSLNNRMVEMT 366
            T  E+ + P    + ++LT  Y GFV  EP      E     RA  AF  L D GYF+YDVV  G  +  + TFVRR +VG  G+TYKYLGLR+FA+ WD     A  + + +LN  +V  T
Sbjct:   75 TGPEKFLTPSHPDFHDILTRSYVGFV-HEPAAAQPREFHAGMRA--AFEHLRDKGYFQYDVVMAGG-KHLSRTFVRRTLVGNFGITYKYLGLRIFAHAWDVPSSAAVFRNLYALNQAIVART 192
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BLAST of mRNA_M-pyrifera_M_contig107037.1503.1 vs. uniprot
Match: A0A0L0DS21_THETB (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DS21_THETB)

HSP 1 Score: 82.0 bits (201), Expect = 9.460e-16
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:   43 EELLTGPYAGFVVEE--PPVVGTDEAEWVQRAEEAFTDLSDLGYFKYDVVQPGRVEDQAATFVRRCVVGEPGVTYKYLGLRVFAYPWDGNDLPA 318
            E+L+   YAG V+E+    +  +D A++      A   L   G+FK+D VQPG++E+   T+VRR VVGEPG+TYKYL  RVFA PW G  L A
Sbjct:  151 EKLMATSYAGAVIEDGASSLAASDHAKF----HAAMKVLKARGWFKFDFVQPGKIEELGPTYVRRVVVGEPGMTYKYLNARVFAVPWAGPALEA 240
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BLAST of mRNA_M-pyrifera_M_contig107037.1503.1 vs. uniprot
Match: A0A485KA16_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KA16_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.260e-15
Identity = 47/122 (38.52%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:    1 TRSERVVKPGEEYYEELLTGPYAGFVVEEPPVVGTDEAEWVQRAEEAFTDLSDLGYFKYDVVQPGRVEDQAATFVRRCVVGEPGVTYKYLGLRVFAYPWDGNDLPAGIQEMCSLNNRMVEMT 366
            T SE+ + P    ++E+L   + GFV E    +  D    ++ A   F  L D GYF+YDVV  G  +  + TFVRR +VG+ G+TYKYLGLR+FA+ W+        Q +  LN +M+  T
Sbjct:   79 TGSEKYLTPAHPMFDEILARSFVGFVHENAAKLPKDLHAGMRLA---FEKLRDKGYFQYDVVMAGG-KHLSRTFVRRTLVGDFGITYKYLGLRIFAHAWNRPSSAPVFQSLYDLNQQMIART 196
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BLAST of mRNA_M-pyrifera_M_contig107037.1503.1 vs. uniprot
Match: A0A7R9U8A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8A5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.370e-15
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:   40 YEELLTGPYAGFVVEEPPVVGTDEAEWVQRAEEAFTDLSDLGYFKYDVVQPGRVEDQAATFVRRCVVGEPGVTYKYLGLRVFAYPWDGNDLPAGIQEMCSLNNRMVE 360
            +E+   G Y  FVVE    +     E  +RA   F  L   G F++DVVQ G  +  + TFVRR +VGEPG+TYKYLGLR+FA+PW G D  A   + C+L  ++ E
Sbjct:   18 FEDARQGAYRDFVVESAAALPESLHEGYRRA---FRQLRKDGLFRHDVVQAGG-KVLSKTFVRRTLVGEPGITYKYLGLRIFAHPWRG-DGSAAPTKACALVGQLNE 119
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BLAST of mRNA_M-pyrifera_M_contig107037.1503.1 vs. uniprot
Match: A0A1E7F4G9_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4G9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.800e-14
Identity = 41/110 (37.27%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:   37 YYEELLTGPYAGFVVEEPPVVGTDEAEWVQRAEEAFTDLSDLGYFKYDVVQPGRVEDQAATFVRRCVVGEPGVTYKYLGLRVFAYPWDGNDLPAGIQEMCSLNNRMVEMT 366
            Y+++ L   Y GFV    PV   +  ++ +  + +   L D GY++YDVV  G  +  + TFV+R +VG PG+TYKYLGLR+FA+ W G      ++ +  +N  M++MT
Sbjct:    8 YFQKHLQDHYKGFV--HLPVDRLEPRDFHEEFKNSLERLRDAGYYQYDVVMAGG-KYSSRTFVKRTLVGNPGITYKYLGLRLFAHAWSGPGCTPLMKSIGDMNQSMIKMT 114
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BLAST of mRNA_M-pyrifera_M_contig107037.1503.1 vs. uniprot
Match: D7FUK2_ECTSI (Alpha-ketoglutarate-dependent dioxygenase FTO n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK2_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.450e-13
Identity = 45/131 (34.35%), Postives = 73/131 (55.73%), Query Frame = 1 
Query:    7 SERVVKPGEEYYEELLTGPYAGFVVEEPPVVGTDEAEWVQRAEEAFTDLSDLGYFKYDVVQP-GRVEDQAATFVRRCVVGEPGVTYKYLGLRVFAYPWD------------GNDLPAGIQEMCSLNNRMVE 360
            S+R V+     ++E+++  +AGF VE        +A+  + A +AF  L + G F+ DV QP G     A T+V R + G+PG TYKYLGLR+F++PW             G+ +P+ ++ +  LNN++ E
Sbjct:   63 SDRFVEESHPQFQEIVSKCFAGFHVEAAEAF---DAKVHEEARQAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLAGDPGTTYKYLGLRMFSHPWTTTAKEADSDGGHGSGVPSALRRVGLLNNKLKE 190
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BLAST of mRNA_M-pyrifera_M_contig107037.1503.1 vs. uniprot
Match: A0A024TSA5_9STRA (FTO_NTD domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSA5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.560e-13
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 1 
Query:    1 TRSERVVKPGEEYYEELLTGPYAGFVVEEPPVVGTDEAEWVQRAEEAFTDLSDLGYFKYDVVQPGRVEDQAATFVRRCVVGEPGVTYKYLGLRVFAYPWDGNDLPAGIQEMCSLNNRMVEMT 366
            T  E+ + P    + ++LT  Y GFV  EP            R   AF  L D GYF+YDVV  G  +  + TFVRR +VG  G+TYKYLGLR+FA+ WD  +     + + +LN   +  T
Sbjct:   84 TGPEKFLTPSHPSFHDILTRSYVGFV-HEPAAKHPRGFHTGMRT--AFETLRDKGYFQYDVVMAGG-KHLSRTFVRRTLVGNYGITYKYLGLRIFAHAWDRPNSAPVFRNIHALNAAFIART 201
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107037.1503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1VUV2_9STRA4.300e-1640.71Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A397ENL4_9STRA4.620e-1641.80FTO_NTD domain-containing protein n=5 Tax=Aphanomy... [more]
A0A6G0WHV1_9STRA4.930e-1640.34Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
W4FR64_9STRA4.970e-1641.80Alpha-ketoglutarate-dependent dioxygenase FTO n=10... [more]
A0A0L0DS21_THETB9.460e-1646.81Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
A0A485KA16_9STRA1.260e-1538.52Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
A0A7R9U8A5_9STRA1.370e-1543.93Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1E7F4G9_9STRA1.800e-1437.27Alpha-ketoglutarate-dependent dioxygenase FTO (Fra... [more]
D7FUK2_ECTSI1.450e-1334.35Alpha-ketoglutarate-dependent dioxygenase FTO n=2 ... [more]
A0A024TSA5_9STRA1.560e-1338.52FTO_NTD domain-containing protein n=1 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107037contigM-pyrifera_M_contig107037:228..593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue5.5e-14
Seed eggNOG ortholog529818.AMSG_10032T0
Preferred nameFTO
KEGG koko:K19469
Hectar predicted targeting categoryother localisation
GOsGO:0001659,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008198,GO:0009451,GO:0009888,GO:0009987,GO:0010883,GO:0016070,GO:0016491,GO:0016604,GO:0016607,GO:0016705,GO:0016706,GO:0031974,GO:0031981,GO:0032451,GO:0032501,GO:0032502,GO:0032879,GO:0033554,GO:0034641,GO:0035510,GO:0035511,GO:0035513,GO:0035514,GO:0035515,GO:0035516,GO:0035552,GO:0035553,GO:0040008,GO:0040014,GO:0042127,GO:0042245,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043576,GO:0043734,GO:0044057,GO:0044065,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0045595,GO:0045598,GO:0046483,GO:0046872,GO:0046914,GO:0048513,GO:0048638,GO:0048731,GO:0048856,GO:0048871,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051213,GO:0051239,GO:0051716,GO:0055114,GO:0060612,GO:0061448,GO:0065007,GO:0065008,GO:0070013,GO:0070344,GO:0070350,GO:0070988,GO:0070989,GO:0071704,GO:0080111,GO:0090304,GO:0090335,GO:0140097,GO:0140098,GO:1901360,GO:1905952,GO:1990931
EggNOG free text desc.RNA N6-methyladenosine dioxygenase activity
EggNOG OGs28IRR@1,2QR31@2759
EC1.14.11.53
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.279109-CDS-M-pyrifera_M_contig107037:227..5931622815580.279109-CDS-M-pyrifera_M_contig107037:227..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107037 228..593 +
1692277473.169414-CDS-M-pyrifera_M_contig107037:227..5931692277473.169414-CDS-M-pyrifera_M_contig107037:227..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107037 228..593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107037.1503.1prot_M-pyrifera_M_contig107037.1503.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107037 228..593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107037.1503.1

>prot_M-pyrifera_M_contig107037.1503.1 ID=prot_M-pyrifera_M_contig107037.1503.1|Name=mRNA_M-pyrifera_M_contig107037.1503.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
TRSERVVKPGEEYYEELLTGPYAGFVVEEPPVVGTDEAEWVQRAEEAFTD
LSDLGYFKYDVVQPGRVEDQAATFVRRCVVGEPGVTYKYLGLRVFAYPWD
GNDLPAGIQEMCSLNNRMVEMT
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mRNA from alignment at M-pyrifera_M_contig107037:228..593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107037.1503.1 ID=mRNA_M-pyrifera_M_contig107037.1503.1|Name=mRNA_M-pyrifera_M_contig107037.1503.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig107037:228..593+ (Macrocystis pyrifera P11B4 male)
ACGAGGAGCGAGCGAGTGGTGAAGCCTGGAGAGGAGTACTACGAGGAGCT
CTTGACGGGCCCCTACGCCGGCTTCGTGGTAGAGGAGCCGCCAGTCGTGG
GAACTGATGAGGCGGAGTGGGTGCAGCGAGCAGAGGAGGCTTTCACAGAT
TTGTCAGACCTGGGGTACTTCAAATACGACGTGGTACAGCCTGGCCGCGT
GGAGGATCAGGCTGCCACGTTTGTGCGAAGATGCGTTGTCGGTGAGCCCG
GGGTGACCTACAAGTACCTGGGCCTCAGGGTGTTTGCGTATCCATGGGAT
GGAAACGACCTTCCTGCCGGCATCCAGGAGATGTGCAGCCTGAACAATAG
GATGGTGGAGATGACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107037:228..593+

>mRNA_M-pyrifera_M_contig107037.1503.1 ID=mRNA_M-pyrifera_M_contig107037.1503.1|Name=mRNA_M-pyrifera_M_contig107037.1503.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig107037:228..593+ (Macrocystis pyrifera P11B4 male)
ACGAGGAGCGAGCGAGTGGTGAAGCCTGGAGAGGAGTACTACGAGGAGCT
CTTGACGGGCCCCTACGCCGGCTTCGTGGTAGAGGAGCCGCCAGTCGTGG
GAACTGATGAGGCGGAGTGGGTGCAGCGAGCAGAGGAGGCTTTCACAGAT
TTGTCAGACCTGGGGTACTTCAAATACGACGTGGTACAGCCTGGCCGCGT
GGAGGATCAGGCTGCCACGTTTGTGCGAAGATGCGTTGTCGGTGAGCCCG
GGGTGACCTACAAGTACCTGGGCCTCAGGGTGTTTGCGTATCCATGGGAT
GGAAACGACCTTCCTGCCGGCATCCAGGAGATGTGCAGCCTGAACAATAG
GATGGTGGAGATGACAACGAGGAGCGAGCGAGTGGTGAAGCCTGGAGAGG
AGTACTACGAGGAGCTCTTGACGGGCCCCTACGCCGGCTTCGTGGTAGAG
GAGCCGCCAGTCGTGGGAACTGATGAGGCGGAGTGGGTGCAGCGAGCAGA
GGAGGCTTTCACAGATTTGTCAGACCTGGGGTACTTCAAATACGACGTGG
TACAGCCTGGCCGCGTGGAGGATCAGGCTGCCACGTTTGTGCGAAGATGC
GTTGTCGGTGAGCCCGGGGTGACCTACAAGTACCTGGGCCTCAGGGTGTT
TGCGTATCCATGGGATGGAAACGACCTTCCTGCCGGCATCCAGGAGATGT
GCAGCCTGAACAATAGGATGGTGGAGATGACA
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