mRNA_M-pyrifera_M_contig107014.1497.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107014.1497.1
Unique NamemRNA_M-pyrifera_M_contig107014.1497.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107014.1497.1 vs. uniprot
Match: A0A7S4IAN6_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IAN6_9EUKA)

HSP 1 Score: 155 bits (393), Expect = 6.030e-46
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:    1 MPKNKGKGXXXXXXXXXXXXEGEKRELILKEEGQAEYAKVLKVLGNCRVQCECFDGKERQCHVRGKFRKKVWINKDDVILIGLRDYQDEKADVIHKYSMDEARQLRNMGHIP 336
            MPKNKGKG            EG KR+LI+KE GQ EYA+V ++LGNCRV   CFDG ER CHVRGKFR++VWIN+DD+IL+GLRDYQDEKAD+IH+YS+DEAR L+++G +P
Sbjct:   21 MPKNKGKGGKSKRKGKNGGHEGSKRQLIIKEPGQ-EYAQVSRILGNCRVSAYCFDGVERMCHVRGKFRRRVWINRDDIILVGLRDYQDEKADIIHRYSLDEARTLKSLGELP 131
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BLAST of mRNA_M-pyrifera_M_contig107014.1497.1 vs. uniprot
Match: A0A7S4KQJ8_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KQJ8_9EUKA)

HSP 1 Score: 150 bits (378), Expect = 3.420e-44
Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = 1 
Query:    1 MPKNKGKGXXXXXXXXXXXXEGEKRELILKEEGQAEYAKVLKVLGNCRVQCECFDGKERQCHVRGKFRKKVWINKDDVILIGLRDYQDEKADVIHKYSMDEARQLRNMGHIP 336
            MPKNKGKG     XXXXX  EG+KREL++KEEGQ EYA+V+K+LGNCR +  CFDG+ R  HVRGKFRKKVWIN+DD+IL+GLRD+QD+K DVIH+Y+ DEAR+L+N G +P
Sbjct:    1 MPKNKGKGGKSKRXXXXXNDEGDKRELLMKEEGQ-EYAQVVKMLGNCRFEAFCFDGQTRIGHVRGKFRKKVWINRDDIILVGLRDFQDDKCDVIHRYTADEARRLKNKGELP 111
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BLAST of mRNA_M-pyrifera_M_contig107014.1497.1 vs. uniprot
Match: E4X515_OIKDI (Eukaryotic translation initiation factor 4C n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4X515_OIKDI)

HSP 1 Score: 140 bits (352), Expect = 3.140e-40
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:    1 MPKNKGKGXXXXXXXXXXXXEGEKRELILKEEGQAEYAKVLKVLGNCRVQCECFDGKERQCHVRGKFRKKVWINKDDVILIGLRDYQDEKADVIHKYSMDEARQLRNMGHIPD 339
            MPKNKGKG            EG KRELILKE+GQ EYA+VLK+LGN R++  CFDG +R  H+RGK RK+ WIN  D+IL+GLRDYQD KADVI KY+ DEAR+L+NMGH+P+
Sbjct:    1 MPKNKGKGGKNRRRGKNEN-EGAKRELILKEDGQ-EYAQVLKMLGNGRLEAMCFDGTKRLAHIRGKLRKRQWINTQDIILVGLRDYQDAKADVIMKYNSDEARRLKNMGHLPE 111
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BLAST of mRNA_M-pyrifera_M_contig107014.1497.1 vs. uniprot
Match: A0A6A7GAV5_9CRUS (Eukaryotic translation initiation factor 4C n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GAV5_9CRUS)

HSP 1 Score: 139 bits (349), Expect = 4.090e-40
Identity = 70/113 (61.95%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:    1 MPKNKGKGXXXXXXXXXXXXEGEKRELILKEEGQAEYAKVLKVLGNCRVQCECFDGKERQCHVRGKFRKKVWINKDDVILIGLRDYQDEKADVIHKYSMDEARQLRNMGHIPD 339
            MPKNKGKG            E  KREL LKEEGQ EYA+VL++LGN R++  CFDGK+R CH+RGK RKKVW+N+ D+IL+GLRD+QD KADVI KY+ DE+RQL+ MG +PD
Sbjct:    1 MPKNKGKGGKNRRRGKNENEE--KRELTLKEEGQ-EYAQVLRMLGNGRLESFCFDGKKRLCHIRGKMRKKVWVNQGDIILLGLRDFQDSKADVILKYNADESRQLKQMGELPD 110
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BLAST of mRNA_M-pyrifera_M_contig107014.1497.1 vs. uniprot
Match: A0A7S0L5F8_9EUKA (Eukaryotic translation initiation factor 4C n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5F8_9EUKA)

HSP 1 Score: 138 bits (347), Expect = 1.860e-39
Identity = 68/113 (60.18%), Postives = 87/113 (76.99%), Query Frame = 1 
Query:    1 MPKNKGKGXXXXXXXXXXXXEGEKRELILKEEGQAEYAKVLKVLGNCRVQCECFDGKERQCHVRGKFRKKVWINKDDVILIGLRDYQDEKADVIHKYSMDEARQLRNMGHIPD 339
            MPK+KGKG            E  KRELILKE+GQ EYA+V+++LGN R+  +CFDGKER CH+RGK RKKVW+N+ D++LIGLRD+QD KADVI KYS +EAR+L+ +G +PD
Sbjct:   30 MPKSKGKGGKNRRRGKNDSEE--KRELILKEDGQ-EYAQVVRMLGNGRLTAQCFDGKERLCHIRGKMRKKVWVNQSDIVLIGLRDFQDNKADVILKYSAEEARRLKKLGELPD 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig107014.1497.1 vs. uniprot
Match: M2XFN2_GALSU (Eukaryotic translation initiation factor 4C n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XFN2_GALSU)

HSP 1 Score: 136 bits (343), Expect = 3.450e-39
Identity = 70/113 (61.95%), Postives = 82/113 (72.57%), Query Frame = 1 
Query:    1 MPKNKGKGXXXXXXXXXXXXEGEKRELILKEEGQAEYAKVLKVLGNCRVQCECFDGKERQCHVRGKFRKKVWINKDDVILIGLRDYQDEKADVIHKYSMDEARQLRNMGHIPD 339
            MPKNKGKG            E EKREL++KEEGQ EYA+V ++LGN R +  CFDG  R CH+RGK RKKVWIN  D++LIGLRDYQDEKAD+I KY+ DEAR L+  G IPD
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEE-EKRELVMKEEGQ-EYAQVTRMLGNGRCEALCFDGTRRLCHIRGKMRKKVWINSGDIVLIGLRDYQDEKADIILKYNPDEARALKAQGEIPD 111
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BLAST of mRNA_M-pyrifera_M_contig107014.1497.1 vs. uniprot
Match: Q4SZY2_TETNG (Eukaryotic translation initiation factor 4C n=7 Tax=Tetraodontidae TaxID=31031 RepID=Q4SZY2_TETNG)

HSP 1 Score: 136 bits (343), Expect = 4.260e-39
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 1 
Query:    1 MPKNKGKGXXXXXXXXXXXXEGEKRELILKEEGQAEYAKVLKVLGNCRVQCECFDGKERQCHVRGKFRKKVWINKDDVILIGLRDYQDEKADVIHKYSMDEARQLRNMGHIPD 339
            MPKNKGKG XXXXXXXXXXX  EKREL+ KE+GQ EYA+VLK+LGN R++  CFDG +R CH+RGK RKKVWIN  D+IL+GLRDYQD KADVI KY++DEAR L+  G +PD
Sbjct:    1 MPKNKGKGGXXXXXXXXXXX-XEKRELVFKEDGQ-EYAQVLKMLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNLDEARSLKAYGELPD 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig107014.1497.1 vs. uniprot
Match: A0A061H7W9_9BASI (Eukaryotic translation initiation factor 4C n=2 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A061H7W9_9BASI)

HSP 1 Score: 136 bits (342), Expect = 6.420e-39
Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 1 
Query:    1 MPKNKGKGXXXXXXXXXXXXEGEKRELILKEEGQAEYAKVLKVLGNCRVQCECFDGKERQCHVRGKFRKKVWINKDDVILIGLRDYQDEKADVIHKYSMDEARQLRNMGHIPD 339
            MPKN GKG            EGEKREL+ KEEGQ EYA+VLK+LGN R++ +CFDG++R  H+RGK RKKVWIN+ D+ILI LRD+QD+KADVI KY+ DEAR L+  G +P+
Sbjct:    1 MPKNSGKGGKNRRRGKNDT-EGEKRELVFKEEGQ-EYAQVLKMLGNGRLEAQCFDGEKRLAHIRGKLRKKVWINQGDIILISLRDFQDDKADVIQKYTADEARSLKQYGELPE 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig107014.1497.1 vs. uniprot
Match: UPI0014557C2A (eukaryotic translation initiation factor 1A, X-chromosomal-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014557C2A)

HSP 1 Score: 135 bits (341), Expect = 7.380e-39
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 1 
Query:    1 MPKNKGKGXXXXXXXXXXXXEGEKRELILKEEGQAEYAKVLKVLGNCRVQCECFDGKERQCHVRGKFRKKVWINKDDVILIGLRDYQDEKADVIHKYSMDEARQLRNMGHIPD 339
            MPKNKGKG XXXXXXXXXXX  EKREL+ KE+GQ EYA+VLK+LGN R++  C DG ER CH+RGK RKKVWIN  D+IL+GLRDYQD+KADVI KYS DEAR L++ G +P+
Sbjct:    1 MPKNKGKGGXXXXXXXXXXX-XEKRELVFKEDGQ-EYAQVLKMLGNGRLKAHCLDGPERLCHIRGKLRKKVWINTGDIILVGLRDYQDDKADVILKYSTDEARYLKDYGELPE 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig107014.1497.1 vs. uniprot
Match: E9H4Z9_DAPPU (Eukaryotic translation initiation factor 4C n=2 Tax=Daphnia TaxID=6668 RepID=E9H4Z9_DAPPU)

HSP 1 Score: 135 bits (341), Expect = 9.670e-39
Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 1 
Query:    1 MPKNKGKGXXXXXXXXXXXXEGEKRELILKEEGQAEYAKVLKVLGNCRVQCECFDGKERQCHVRGKFRKKVWINKDDVILIGLRDYQDEKADVIHKYSMDEARQLRNMGHIPD 339
            MPKNKGKG            E EKRELI KE+GQ EYA+V K+LGN R++  CFDG +R CH+RGK RKKVWIN+ D+IL+GLRDYQD KADVI KY+ DEAR L+  G IP+
Sbjct:    1 MPKNKGKGGKNRRRGKNEN-EAEKRELIFKEDGQ-EYAQVTKMLGNGRLEALCFDGTKRLCHIRGKLRKKVWINQGDIILVGLRDYQDAKADVILKYNADEARNLKTYGEIPE 111
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107014.1497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IAN6_9EUKA6.030e-4664.29Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4KQJ8_9EUKA3.420e-4467.86Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
E4X515_OIKDI3.140e-4062.83Eukaryotic translation initiation factor 4C n=2 Ta... [more]
A0A6A7GAV5_9CRUS4.090e-4061.95Eukaryotic translation initiation factor 4C n=1 Ta... [more]
A0A7S0L5F8_9EUKA1.860e-3960.18Eukaryotic translation initiation factor 4C n=1 Ta... [more]
M2XFN2_GALSU3.450e-3961.95Eukaryotic translation initiation factor 4C n=1 Ta... [more]
Q4SZY2_TETNG4.260e-3970.80Eukaryotic translation initiation factor 4C n=7 Ta... [more]
A0A061H7W9_9BASI6.420e-3960.18Eukaryotic translation initiation factor 4C n=2 Ta... [more]
UPI0014557C2A7.380e-3970.80eukaryotic translation initiation factor 1A, X-chr... [more]
E9H4Z9_DAPPU9.670e-3961.95Eukaryotic translation initiation factor 4C n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107014contigM-pyrifera_M_contig107014:9..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score143.3
Seed ortholog evalue7e-32
Seed eggNOG ortholog72558.CBQ68906
Preferred nameTIF11
KEGG koko:K03236
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0001731,GO:0001732,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003727,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016282,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031369,GO:0032991,GO:0033290,GO:0033592,GO:0034622,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043021,GO:0043024,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0097617,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits
EggNOG OGs3A1R5@33154,3N30U@452284,3P2UG@4751,3V0VS@5204,COG0361@1,KOG3403@2759
COG Functional cat.J
Best tax levelUstilaginomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Exons2
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.9930055-CDS-M-pyrifera_M_contig107014:8..2441622815579.9930055-CDS-M-pyrifera_M_contig107014:8..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107014 9..244 -
1692277473.036593-CDS-M-pyrifera_M_contig107014:8..2441692277473.036593-CDS-M-pyrifera_M_contig107014:8..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107014 9..244 -
1622815580.00586-CDS-M-pyrifera_M_contig107014:436..5391622815580.00586-CDS-M-pyrifera_M_contig107014:436..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107014 437..539 -
1692277473.0479836-CDS-M-pyrifera_M_contig107014:436..5391692277473.0479836-CDS-M-pyrifera_M_contig107014:436..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107014 437..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107014.1497.1prot_M-pyrifera_M_contig107014.1497.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107014 9..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107014.1497.1

>prot_M-pyrifera_M_contig107014.1497.1 ID=prot_M-pyrifera_M_contig107014.1497.1|Name=mRNA_M-pyrifera_M_contig107014.1497.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MPKNKGKGGKSKRKGKNKNREGEKRELILKEEGQAEYAKVLKVLGNCRVQ
CECFDGKERQCHVRGKFRKKVWINKDDVILIGLRDYQDEKADVIHKYSMD
EARQLRNMGHIPD
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mRNA from alignment at M-pyrifera_M_contig107014:9..539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107014.1497.1 ID=mRNA_M-pyrifera_M_contig107014.1497.1|Name=mRNA_M-pyrifera_M_contig107014.1497.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig107014:9..539- (Macrocystis pyrifera P11B4 male)
ATGCCGAAGAACAAAGGAAAGGGAGGAAAGAGCAAGAGGAAGGGAAAGAA
CAAAAACCGCGAGGGAGAGAAGCGCGAGCTCATCCTCAAGGAGGAGGGAC
AGGGTCCGACCCCTTCTTAGTCTTTCCTGTTTCTTTTCCTCCCATTCTCC
TCACGCCTTCTCCCTCTCCCTCTCTCCCTCTCCCTCTCTCCCTCTCTCCC
TCTCTCTCTCGCTCTCTCGCTCTCTCTCTCCAGCCCCTCCCGCCTGGCTT
GCGAGAAAGCGGCGGAGTGGCACAATGCACAGGCCTGACGGAGAGCAGAG
TACGCGAAGGTCCTGAAGGTGCTGGGAAACTGCCGTGTGCAGTGCGAGTG
CTTCGACGGAAAGGAGAGGCAGTGCCATGTCCGCGGAAAGTTCCGCAAGA
AGGTGTGGATCAACAAGGACGATGTGATCCTCATTGGCCTGCGCGACTAC
CAGGACGAGAAGGCAGACGTCATCCACAAGTACTCCATGGACGAGGCCCG
CCAGCTGCGCAACATGGGCCACATCCCCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107014:9..539-

>mRNA_M-pyrifera_M_contig107014.1497.1 ID=mRNA_M-pyrifera_M_contig107014.1497.1|Name=mRNA_M-pyrifera_M_contig107014.1497.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig107014:9..539- (Macrocystis pyrifera P11B4 male)
ATGCCGAAGAACAAAGGAAAGGGAGGAAAGAGCAAGAGGAAGGGAAAGAA
CAAAAACCGCGAGGGAGAGAAGCGCGAGCTCATCCTCAAGGAGGAGGGAC
AGGATGCCGAAGAACAAAGGAAAGGGAGGAAAGAGCAAGAGGAAGGGAAA
GAACAAAAACCGCGAGGGAGAGAAGCGCGAGCTCATCCTCAAGGAGGAGG
GACAGGCAGAGTACGCGAAGGTCCTGAAGGTGCTGGGAAACTGCCGTGTG
CAGTGCGAGTGCTTCGACGGAAAGGAGAGGCAGTGCCATGTCCGCGGAAA
GTTCCGCAAGAAGGTGTGGATCAACAAGGACGATGTGATCCTCATTGGCC
TGCGCGACTACCAGGACGAGAAGGCAGACGTCATCCACAAGTACTCCATG
GACGAGGCCCGCCAGCTGCGCAACATGGGCCACATCCCCGACCAGAGTAC
GCGAAGGTCCTGAAGGTGCTGGGAAACTGCCGTGTGCAGTGCGAGTGCTT
CGACGGAAAGGAGAGGCAGTGCCATGTCCGCGGAAAGTTCCGCAAGAAGG
TGTGGATCAACAAGGACGATGTGATCCTCATTGGCCTGCGCGACTACCAG
GACGAGAAGGCAGACGTCATCCACAAGTACTCCATGGACGAGGCCCGCCA
GCTGCGCAACATGGGCCACATCCCCGAC
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