mRNA_M-pyrifera_M_contig107010.1495.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107010.1495.1
Unique NamemRNA_M-pyrifera_M_contig107010.1495.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107010.1495.1 vs. uniprot
Match: UPI0012D3CA59 (WD repeat-containing protein 82 n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D3CA59)

HSP 1 Score: 139 bits (351), Expect = 2.100e-37
Identity = 64/154 (41.56%), Postives = 95/154 (61.69%), Query Frame = 1
Query:    1 YDARTYDQGPFSTFAVQLPPPANPSVPRSSRALQWTGLEFTNDGRHILLSSHSAWMS-IDAFKGQVVAEYSGHASDGRLPLVASASPDCEHVLCGSADGRVHVWELESGKKSAVWADQHPAPVTHVRWNPSYRFVASACTALCFWLPQGDDTAQ 459
            YD R++D+GPF TF +              R  +WTGL+F+ DG+ IL+S+   ++  +DAF G  +  ++GH+++ +LP+ AS SPD + +  GS DGRVHVW  ++G K       HPAPV  V++NP Y  +ASACT + FWLP  +D +Q
Sbjct:  191 YDLRSFDKGPFVTFKLN-----------QERECEWTGLKFSRDGKTILISTDGQFIRLVDAFHGTPLQTFTGHSNNKKLPIEASYSPDSQFIFAGSVDGRVHVWNADTGYKICALNGDHPAPVQCVQFNPKYMMLASACTNMAFWLPNPEDLSQ 333          
BLAST of mRNA_M-pyrifera_M_contig107010.1495.1 vs. uniprot
Match: C1C1H1_CALCM (WD repeat-containing protein 82 n=1 Tax=Caligus clemensi TaxID=344056 RepID=C1C1H1_CALCM)

HSP 1 Score: 139 bits (350), Expect = 2.120e-37
Identity = 67/153 (43.79%), Postives = 97/153 (63.40%), Query Frame = 1
Query:    1 YDARTYDQGPFSTFAVQLPPPANPSVPRSSRALQWTGLEFTNDGRHILLSSHSAWMS-IDAFKGQVVAEYSGHASDGRLPLVASASPDCEHVLCGSADGRVHVWELESGKKSAVWADQHPAPVTHVRWNPSYRFVASACTALCFWLPQGDDTA 456
            YD R++D+GPFS+F  + PP          + ++WTGL+F+ DG+ IL+S++ + +  IDAF GQ +  ++GH +   +PL AS SPD + V+ GS DGRVH+W  E+G K  V    H APV  V++NP Y  +ASAC  + FWLP  D+ A
Sbjct:  177 YDLRSFDKGPFSSF--KFPP---------EKEMEWTGLKFSPDGKTILISTNGSLIKLIDAFSGQTLQTFTGHTNTKGIPLEASFSPDSQFVISGSTDGRVHIWNAETGSKVCVLNGDHDAPVRCVQFNPKYMMMASACNNMAFWLPSIDEEA 318          
BLAST of mRNA_M-pyrifera_M_contig107010.1495.1 vs. uniprot
Match: G2HGK5_PANTR (Transmembrane protein 113 n=1 Tax=Pan troglodytes TaxID=9598 RepID=G2HGK5_PANTR)

HSP 1 Score: 135 bits (339), Expect = 4.890e-37
Identity = 63/152 (41.45%), Postives = 100/152 (65.79%), Query Frame = 1
Query:    1 YDARTYDQGPFSTFAVQLPPPANPSVPRSSRALQWTGLEFTNDGRHILLSSHSAWMS-IDAFKGQVVAEYSGHASDGRLPLVASASPDCEHVLCGSADGRVHVWELESGKKSAVWADQHPAPVTHVRWNPSYRFVASACTALCFWLPQGDDT 453
            YD R + +GPF+TF +Q            +R  +WTGL+F+NDG+ IL+S++ +++S IDAFKG V+  + G+A+   + L AS +PD + ++ GS DG++HVW  ESG K A+   +H  P+T +++NP +   ASAC+++ FWLP  DD+
Sbjct:   60 YDLRYFHKGPFTTFRMQC-----------NRTCEWTGLKFSNDGKVILISTNGSFISLIDAFKGVVMHTFEGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNAESGIKVAMLDGKHTGPITCLQFNPKFMTFASACSSMVFWLPTIDDS 200          
BLAST of mRNA_M-pyrifera_M_contig107010.1495.1 vs. uniprot
Match: A0A5E4BN91_MARMO (Uncharacterized protein n=4 Tax=Boreoeutheria TaxID=1437010 RepID=A0A5E4BN91_MARMO)

HSP 1 Score: 135 bits (340), Expect = 1.260e-36
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 YDARTYDQGPFSTFAVQLPPPANPSVPRSSRALQWTGLEFTNDGRHILLSSHSAWMS-IDAFKGQVVAEYSGHASDGRLPLVASASPDCEHVLCGSADGRVHVWELESGKKSAVWADQHPAPVTHVRWNPSYRFVASACTALCFWLPQGDD 450
            YD R++D+GPF+TF +Q             R  +WTGL+F+NDG+ IL+S++ +++  IDAFKG V+  + G+A+   + L AS +PD + ++ GS DG++HVW  ESG K AV   +H  P+T +++NP +   ASAC+ + FWLP  DD
Sbjct:  110 YDLRSFDKGPFATFKMQY-----------DRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTIDD 249          
BLAST of mRNA_M-pyrifera_M_contig107010.1495.1 vs. uniprot
Match: A0A0D9SBL1_CHLSB (Uncharacterized protein n=11 Tax=Catarrhini TaxID=9526 RepID=A0A0D9SBL1_CHLSB)

HSP 1 Score: 137 bits (344), Expect = 1.480e-36
Identity = 65/151 (43.05%), Postives = 100/151 (66.23%), Query Frame = 1
Query:    1 YDARTYDQGPFSTFAVQLPPPANPSVPRSSRALQWTGLEFTNDGRHILLSSHSAWMS-IDAFKGQVVAEYSGHASDGRLPLVASASPDCEHVLCGSADGRVHVWELESGKKSAVWADQHPAPVTHVRWNPSYRFVASACTALCFWLPQGDD 450
            YD R++D+GPF+TF +Q             R  +WTGL+F+NDG+ IL+S++ +++S IDAFKG V+  ++G+A+   + L AS +PD + ++ GS DG++HVW  ESG K AV   +H  P+T +++NP +   ASAC+ + FWLP  DD
Sbjct:  174 YDLRSFDKGPFTTFKMQC-----------HRTCEWTGLKFSNDGKVILISTNGSFISLIDAFKGVVMHTFAGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMVFWLPTIDD 313          
BLAST of mRNA_M-pyrifera_M_contig107010.1495.1 vs. uniprot
Match: A0A452V7W8_URSMA (WD repeat domain 82 n=2 Tax=Tetrapoda TaxID=32523 RepID=A0A452V7W8_URSMA)

HSP 1 Score: 135 bits (340), Expect = 1.500e-36
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 YDARTYDQGPFSTFAVQLPPPANPSVPRSSRALQWTGLEFTNDGRHILLSSHSAWMS-IDAFKGQVVAEYSGHASDGRLPLVASASPDCEHVLCGSADGRVHVWELESGKKSAVWADQHPAPVTHVRWNPSYRFVASACTALCFWLPQGDD 450
            YD R++D+GPF+TF +Q             R  +WTGL+F+NDG+ IL+S++ +++  IDAFKG V+  + G+A+   + L AS +PD + ++ GS DG++HVW  ESG K AV   +H  P+T +++NP +   ASAC+ + FWLP  DD
Sbjct:  117 YDLRSFDKGPFATFKMQY-----------DRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTIDD 256          
BLAST of mRNA_M-pyrifera_M_contig107010.1495.1 vs. uniprot
Match: A0A2J8P8I0_PANTR (WDR82 isoform 3 n=1 Tax=Pan troglodytes TaxID=9598 RepID=A0A2J8P8I0_PANTR)

HSP 1 Score: 135 bits (340), Expect = 1.580e-36
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 YDARTYDQGPFSTFAVQLPPPANPSVPRSSRALQWTGLEFTNDGRHILLSSHSAWMS-IDAFKGQVVAEYSGHASDGRLPLVASASPDCEHVLCGSADGRVHVWELESGKKSAVWADQHPAPVTHVRWNPSYRFVASACTALCFWLPQGDD 450
            YD R++D+GPF+TF +Q             R  +WTGL+F+NDG+ IL+S++ +++  IDAFKG V+  + G+A+   + L AS +PD + ++ GS DG++HVW  ESG K AV   +H  P+T +++NP +   ASAC+ + FWLP  DD
Sbjct:  119 YDLRSFDKGPFATFKMQY-----------DRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTIDD 258          
BLAST of mRNA_M-pyrifera_M_contig107010.1495.1 vs. uniprot
Match: A0A6J0VWV1_ODOVR (WD repeat-containing protein 82 isoform X2 n=1 Tax=Odocoileus virginianus texanus TaxID=9880 RepID=A0A6J0VWV1_ODOVR)

HSP 1 Score: 135 bits (340), Expect = 1.750e-36
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 YDARTYDQGPFSTFAVQLPPPANPSVPRSSRALQWTGLEFTNDGRHILLSSHSAWMS-IDAFKGQVVAEYSGHASDGRLPLVASASPDCEHVLCGSADGRVHVWELESGKKSAVWADQHPAPVTHVRWNPSYRFVASACTALCFWLPQGDD 450
            YD R++D+GPF+TF +Q             R  +WTGL+F+NDG+ IL+S++ +++  IDAFKG V+  + G+A+   + L AS +PD + ++ GS DG++HVW  ESG K AV   +H  P+T +++NP +   ASAC+ + FWLP  DD
Sbjct:  123 YDLRSFDKGPFATFKMQY-----------DRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTIDD 262          
BLAST of mRNA_M-pyrifera_M_contig107010.1495.1 vs. uniprot
Match: UPI00064C1783 (WD repeat-containing protein 82 n=1 Tax=Ochotona princeps TaxID=9978 RepID=UPI00064C1783)

HSP 1 Score: 135 bits (340), Expect = 1.840e-36
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 YDARTYDQGPFSTFAVQLPPPANPSVPRSSRALQWTGLEFTNDGRHILLSSHSAWMS-IDAFKGQVVAEYSGHASDGRLPLVASASPDCEHVLCGSADGRVHVWELESGKKSAVWADQHPAPVTHVRWNPSYRFVASACTALCFWLPQGDD 450
            YD R++D+GPF+TF +Q             R  +WTGL+F+NDG+ IL+S++ +++  IDAFKG V+  + G+A+   + L AS +PD + ++ GS DG++HVW  ESG K AV   +H  P+T +++NP +   ASAC+ + FWLP  DD
Sbjct:  125 YDLRSFDKGPFATFKMQY-----------DRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTIDD 264          
BLAST of mRNA_M-pyrifera_M_contig107010.1495.1 vs. uniprot
Match: A0A6P3IDU2_BISBI (WD repeat-containing protein 82 n=5 Tax=Laurasiatheria TaxID=314145 RepID=A0A6P3IDU2_BISBI)

HSP 1 Score: 135 bits (340), Expect = 2.130e-36
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 YDARTYDQGPFSTFAVQLPPPANPSVPRSSRALQWTGLEFTNDGRHILLSSHSAWMS-IDAFKGQVVAEYSGHASDGRLPLVASASPDCEHVLCGSADGRVHVWELESGKKSAVWADQHPAPVTHVRWNPSYRFVASACTALCFWLPQGDD 450
            YD R++D+GPF+TF +Q             R  +WTGL+F+NDG+ IL+S++ +++  IDAFKG V+  + G+A+   + L AS +PD + ++ GS DG++HVW  ESG K AV   +H  P+T +++NP +   ASAC+ + FWLP  DD
Sbjct:  131 YDLRSFDKGPFATFKMQY-----------DRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTIDD 270          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107010.1495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0012D3CA592.100e-3741.56WD repeat-containing protein 82 n=1 Tax=Contarinia... [more]
C1C1H1_CALCM2.120e-3743.79WD repeat-containing protein 82 n=1 Tax=Caligus cl... [more]
G2HGK5_PANTR4.890e-3741.45Transmembrane protein 113 n=1 Tax=Pan troglodytes ... [more]
A0A5E4BN91_MARMO1.260e-3642.38Uncharacterized protein n=4 Tax=Boreoeutheria TaxI... [more]
A0A0D9SBL1_CHLSB1.480e-3643.05Uncharacterized protein n=11 Tax=Catarrhini TaxID=... [more]
A0A452V7W8_URSMA1.500e-3642.38WD repeat domain 82 n=2 Tax=Tetrapoda TaxID=32523 ... [more]
A0A2J8P8I0_PANTR1.580e-3642.38WDR82 isoform 3 n=1 Tax=Pan troglodytes TaxID=9598... [more]
A0A6J0VWV1_ODOVR1.750e-3642.38WD repeat-containing protein 82 isoform X2 n=1 Tax... [more]
UPI00064C17831.840e-3642.38WD repeat-containing protein 82 n=1 Tax=Ochotona p... [more]
A0A6P3IDU2_BISBI2.130e-3642.38WD repeat-containing protein 82 n=5 Tax=Laurasiath... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107010contigM-pyrifera_M_contig107010:1..471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score137.1
Seed ortholog evalue7e-30
Seed eggNOG ortholog9593.ENSGGOP00000023910
Preferred nameWDR82
KEGG koko:K14962
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs35GHM@314146,38EVS@33154,3BAWD@33208,3CXDJ@33213,3J3EJ@40674,4817Z@7711,48XZJ@7742,4MASB@9443,4MSWK@9604,KOG1446@1,KOG1446@2759
COG Functional cat.ABO
Best tax levelHominidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.904571-CDS-M-pyrifera_M_contig107010:0..4711622815579.904571-CDS-M-pyrifera_M_contig107010:0..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107010 1..471 +
1692277473.0010712-CDS-M-pyrifera_M_contig107010:0..4711692277473.0010712-CDS-M-pyrifera_M_contig107010:0..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107010 1..471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107010.1495.1prot_M-pyrifera_M_contig107010.1495.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107010 1..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107010.1495.1

>prot_M-pyrifera_M_contig107010.1495.1 ID=prot_M-pyrifera_M_contig107010.1495.1|Name=mRNA_M-pyrifera_M_contig107010.1495.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
YDARTYDQGPFSTFAVQLPPPANPSVPRSSRALQWTGLEFTNDGRHILLS
SHSAWMSIDAFKGQVVAEYSGHASDGRLPLVASASPDCEHVLCGSADGRV
HVWELESGKKSAVWADQHPAPVTHVRWNPSYRFVASACTALCFWLPQGDD
TAQPNL*
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mRNA from alignment at M-pyrifera_M_contig107010:1..471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107010.1495.1 ID=mRNA_M-pyrifera_M_contig107010.1495.1|Name=mRNA_M-pyrifera_M_contig107010.1495.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig107010:1..471+ (Macrocystis pyrifera P11B4 male)
TACGACGCGCGGACCTACGACCAGGGGCCTTTCTCGACCTTTGCAGTTCA GCTGCCTCCTCCCGCAAACCCTTCGGTGCCGCGGAGCTCTCGAGCGCTGC AGTGGACAGGCCTGGAGTTCACCAACGATGGCCGCCACATTCTCCTTTCG TCCCACTCTGCCTGGATGAGCATTGATGCCTTCAAGGGCCAAGTCGTGGC GGAGTACTCGGGCCACGCCTCGGACGGCCGCCTCCCCCTCGTCGCCTCGG CGTCGCCCGACTGCGAGCACGTTCTCTGCGGCTCTGCAGACGGACGCGTG CACGTGTGGGAGCTGGAGAGCGGCAAGAAGAGTGCGGTGTGGGCCGACCA GCACCCTGCGCCTGTCACGCACGTCCGCTGGAACCCCTCCTACCGCTTCG TCGCCAGCGCTTGCACTGCCCTCTGCTTCTGGCTGCCCCAGGGCGACGAC ACTGCGCAGCCCAACCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107010:1..471+

>mRNA_M-pyrifera_M_contig107010.1495.1 ID=mRNA_M-pyrifera_M_contig107010.1495.1|Name=mRNA_M-pyrifera_M_contig107010.1495.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig107010:1..471+ (Macrocystis pyrifera P11B4 male)
TACGACGCGCGGACCTACGACCAGGGGCCTTTCTCGACCTTTGCAGTTCA
GCTGCCTCCTCCCGCAAACCCTTCGGTGCCGCGGAGCTCTCGAGCGCTGC
AGTGGACAGGCCTGGAGTTCACCAACGATGGCCGCCACATTCTCCTTTCG
TCCCACTCTGCCTGGATGAGCATTGATGCCTTCAAGGGCCAAGTCGTGGC
GGAGTACTCGGGCCACGCCTCGGACGGCCGCCTCCCCCTCGTCGCCTCGG
CGTCGCCCGACTGCGAGCACGTTCTCTGCGGCTCTGCAGACGGACGCGTG
CACGTGTGGGAGCTGGAGAGCGGCAAGAAGAGTGCGGTGTGGGCCGACCA
GCACCCTGCGCCTGTCACGCACGTCCGCTGGAACCCCTCCTACCGCTTCG
TCGCCAGCGCTTGCACTGCCCTCTGCTTCTGGCTGCCCCAGGGCGACGAC
ACTGCGCAGCCCAACCTCTGATACGACGCGCGGACCTACGACCAGGGGCC
TTTCTCGACCTTTGCAGTTCAGCTGCCTCCTCCCGCAAACCCTTCGGTGC
CGCGGAGCTCTCGAGCGCTGCAGTGGACAGGCCTGGAGTTCACCAACGAT
GGCCGCCACATTCTCCTTTCGTCCCACTCTGCCTGGATGAGCATTGATGC
CTTCAAGGGCCAAGTCGTGGCGGAGTACTCGGGCCACGCCTCGGACGGCC
GCCTCCCCCTCGTCGCCTCGGCGTCGCCCGACTGCGAGCACGTTCTCTGC
GGCTCTGCAGACGGACGCGTGCACGTGTGGGAGCTGGAGAGCGGCAAGAA
GAGTGCGGTGTGGGCCGACCAGCACCCTGCGCCTGTCACGCACGTCCGCT
GGAACCCCTCCTACCGCTTCGTCGCCAGCGCTTGCACTGCCCTCTGCTTC
TGGCTGCCCCAGGGCGACGACACTGCGCAGCCCAACCTCTGA
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