mRNA_M-pyrifera_M_contig107001.1494.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107001.1494.1
Unique NamemRNA_M-pyrifera_M_contig107001.1494.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107001.1494.1 vs. uniprot
Match: A0A6H5L0P9_9PHAE (SEC7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P9_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.750e-25
Identity = 52/71 (73.24%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 MLNTDLHNPNIRPENRMTRHGFFLNNANYGKDISGTLDLPRDFLESVYASIKEQPITTRGGGPDAVVTANG 213
            MLNTDLHNPNIRPE RM+   F  NN NYG DISG  DLP D+LESVY SIKEQPI T GGGPD  VTA+G
Sbjct:    5 MLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKEQPIATSGGGPDDAVTAHG 75
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BLAST of mRNA_M-pyrifera_M_contig107001.1494.1 vs. uniprot
Match: D8LRA5_ECTSI (SEC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.350e-25
Identity = 52/71 (73.24%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 MLNTDLHNPNIRPENRMTRHGFFLNNANYGKDISGTLDLPRDFLESVYASIKEQPITTRGGGPDAVVTANG 213
            MLNTDLHNPNIRPE RM+   F  NN NYG DISG  DLP D+LESVY SIKEQPI T GGGPD  VTA+G
Sbjct:  664 MLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGHDLPADYLESVYTSIKEQPIATSGGGPDDAVTAHG 734
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BLAST of mRNA_M-pyrifera_M_contig107001.1494.1 vs. uniprot
Match: I2CS41_NANGC (SEC7 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS41_NANGC)

HSP 1 Score: 82.8 bits (203), Expect = 4.510e-19
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 MLNTDLHNPNIRPENRMTRHGFFLNNANYGKDISGTLDLPRDFLESVYASIKEQPITTRGGGPDAVVTAN 210
            MLNTDLHN NIR E RM+   F+ NN NYGKDIS   DLP DFLE++Y SI+E PI +    P+  +TA+
Sbjct:    1 MLNTDLHNRNIRAEKRMSLSDFYRNNKNYGKDISKGKDLPLDFLETIYRSIREHPILSFDASPEGEMTAD 70
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BLAST of mRNA_M-pyrifera_M_contig107001.1494.1 vs. uniprot
Match: A0A7S2W5R9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W5R9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.020e-16
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 MLNTDLHNPNIRPENRMTRHGFFLNNANYGKDISGT-LDLPRDFLESVYASIKEQPITTRGGGPDAVVT 204
            MLNTDLHN NIRP+ +MT   F  NN++YG+DI+   L+LP+ FLE +Y SI+E+PI T G G D V+T
Sbjct:  184 MLNTDLHNENIRPDRKMTASDFVKNNSDYGRDITDPGLELPKAFLEGIYESIREEPIRTEGEGADGVMT 252
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BLAST of mRNA_M-pyrifera_M_contig107001.1494.1 vs. uniprot
Match: A0A7S3YER2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YER2_HETAK)

HSP 1 Score: 80.1 bits (196), Expect = 1.800e-16
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 MLNTDLHNPNIRPENRMTRHGFFLNNANYGKDISGTLDLPRDFLESVYASIKEQPITTRGGGPDAVVTAN 210
            ML TDLHN NIRPE RMT   F   N NYG  IS   DLPR+ LE++Y +I+E+P+ T G GPD  VT +
Sbjct:  153 MLQTDLHNANIRPEKRMTLEQFVRQNRNYGAGISRGRDLPREALEALYRAIREEPLHTLGDGPDGQVTVD 222
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BLAST of mRNA_M-pyrifera_M_contig107001.1494.1 vs. uniprot
Match: A0A5D6XRC6_9STRA (SEC7 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRC6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.750e-15
Identity = 40/71 (56.34%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:    1 MLNTDLHNPNIRPENRMTRHGFFLNNANYGKDISGTLDLPRDFLESVYASIKEQPITT-RGGGPDAVVTAN 210
            MLNTDLHNPNIRPE +MTR  F  NN NYG+D+S   DLP DFL  +YA+I    I T   GG    VT +
Sbjct:  710 MLNTDLHNPNIRPEKKMTRDDFVRNNRNYGRDVSAGRDLPDDFLTELYAAIASDEIKTFEDGGRHGEVTTD 780
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BLAST of mRNA_M-pyrifera_M_contig107001.1494.1 vs. uniprot
Match: A0A7S1TTF5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTF5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.400e-15
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    1 MLNTDLHNPNIRPENRMTRHGFFLNNANYGKDISGTLDLPRDFLESVYASIKE-QPITTRGGGPDAVVT 204
            MLNTDLHNPNI+PE RMT   F  +N NYG++IS   DLP D LE +Y SI+E Q ITT   GP   +T
Sbjct:  309 MLNTDLHNPNIKPERRMTLADFKRSNTNYGREISEGRDLPADLLEDIYQSIQEDQIITTDDDGPAGAIT 377
[Close]
BLAST of mRNA_M-pyrifera_M_contig107001.1494.1 vs. uniprot
Match: A0A7S3PHS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PHS2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.720e-15
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 MLNTDLHNPNIRPENRMTRHGFFLNNANYGKDISGTLDLPRDFLESVYASIKEQPITT 174
            MLNTDLHNPNIRPE +MT   F   N NYG++ SG  DL +DFL+SVY  IKE+ I T
Sbjct:   21 MLNTDLHNPNIRPEKKMTMELFIKLNTNYGEEASGGKDLDKDFLQSVYREIKEREINT 78
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BLAST of mRNA_M-pyrifera_M_contig107001.1494.1 vs. uniprot
Match: A0A7S2UGQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGQ2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 7.030e-14
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 MLNTDLHNPNIRPENRMTRHGFFLNNANYGKDIS--GTLDLPRDFLESVYASIKEQPITTRGGGPDAVVT 204
            MLNTDLHN NIRP+ +MT   F  NN +YG+DI+  G L LP  +LE++Y  IK++ I T G G D V+T
Sbjct:   34 MLNTDLHNDNIRPDRKMTLSDFIKNNRDYGRDITDEGHL-LPSQYLETIYHGIKQEQIRTMGEGADGVMT 102
[Close]
BLAST of mRNA_M-pyrifera_M_contig107001.1494.1 vs. uniprot
Match: A0A7S2L686_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L686_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.410e-14
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 MLNTDLHNPNIRPENRMTRHGFFLNNANYGKDISGT-LDLPRDFLESVYASIKEQPITTRGGGPDAVVT 204
            MLNTDLHN NIRP+ +M+   F  NN++YG+D++     LPR+FLES+Y SIK + I T G G + ++T
Sbjct:  751 MLNTDLHNDNIRPDRKMSVDAFVRNNSDYGRDVTDEGKPLPREFLESIYESIKMEEIRTEGEGAEGIMT 819
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107001.1494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0P9_9PHAE2.750e-2573.24SEC7 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRA5_ECTSI4.350e-2573.24SEC7 domain-containing protein n=1 Tax=Ectocarpus ... [more]
I2CS41_NANGC4.510e-1957.14SEC7 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S2W5R9_9STRA1.020e-1656.52Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3YER2_HETAK1.800e-1655.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6XRC6_9STRA1.750e-1556.34SEC7 domain-containing protein n=1 Tax=Pythium bra... [more]
A0A7S1TTF5_9STRA4.400e-1557.97Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3PHS2_9STRA5.720e-1562.07Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S2UGQ2_9STRA7.030e-1452.86Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2L686_9STRA7.410e-1450.72Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107001contigM-pyrifera_M_contig107001:89..304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog2880.D8LRA5
KEGG koko:K18442,ko:K18443
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000137,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0005829,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006914,GO:0006996,GO:0007010,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0019898,GO:0019899,GO:0030029,GO:0030036,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0065007,GO:0065009,GO:0071840,GO:0097708,GO:0098772,GO:0098791
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0928@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size216
Cds size216
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.8744366-CDS-M-pyrifera_M_contig107001:88..3041622815579.8744366-CDS-M-pyrifera_M_contig107001:88..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107001 89..304 -
1692277472.987649-CDS-M-pyrifera_M_contig107001:88..3041692277472.987649-CDS-M-pyrifera_M_contig107001:88..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107001 89..304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107001.1494.1prot_M-pyrifera_M_contig107001.1494.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107001 89..304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107001.1494.1

>prot_M-pyrifera_M_contig107001.1494.1 ID=prot_M-pyrifera_M_contig107001.1494.1|Name=mRNA_M-pyrifera_M_contig107001.1494.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
MLNTDLHNPNIRPENRMTRHGFFLNNANYGKDISGTLDLPRDFLESVYAS
IKEQPITTRGGGPDAVVTANG*
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mRNA from alignment at M-pyrifera_M_contig107001:89..304-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107001.1494.1 ID=mRNA_M-pyrifera_M_contig107001.1494.1|Name=mRNA_M-pyrifera_M_contig107001.1494.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig107001:89..304- (Macrocystis pyrifera P11B4 male)
ATGCTCAACACCGACCTCCACAACCCCAACATCCGACCGGAGAACCGCAT
GACTCGCCACGGCTTCTTCCTCAACAATGCGAACTACGGCAAGGACATCA
GCGGGACCCTCGACCTTCCCCGCGACTTCCTCGAGTCCGTATACGCCTCC
ATAAAAGAGCAACCCATCACCACGAGGGGGGGGGGACCCGATGCGGTCGT
GACTGCAAACGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107001:89..304-

>mRNA_M-pyrifera_M_contig107001.1494.1 ID=mRNA_M-pyrifera_M_contig107001.1494.1|Name=mRNA_M-pyrifera_M_contig107001.1494.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig107001:89..304- (Macrocystis pyrifera P11B4 male)
ATGCTCAACACCGACCTCCACAACCCCAACATCCGACCGGAGAACCGCAT
GACTCGCCACGGCTTCTTCCTCAACAATGCGAACTACGGCAAGGACATCA
GCGGGACCCTCGACCTTCCCCGCGACTTCCTCGAGTCCGTATACGCCTCC
ATAAAAGAGCAACCCATCACCACGAGGGGGGGGGGACCCGATGCGGTCGT
GACTGCAAACGGGTGAATGCTCAACACCGACCTCCACAACCCCAACATCC
GACCGGAGAACCGCATGACTCGCCACGGCTTCTTCCTCAACAATGCGAAC
TACGGCAAGGACATCAGCGGGACCCTCGACCTTCCCCGCGACTTCCTCGA
GTCCGTATACGCCTCCATAAAAGAGCAACCCATCACCACGAGGGGGGGGG
GACCCGATGCGGTCGTGACTGCAAACGGGTGA
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