mRNA_M-pyrifera_M_contig10699.1490.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10699.1490.1
Unique NamemRNA_M-pyrifera_M_contig10699.1490.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10699.1490.1 vs. uniprot
Match: D7FIG6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIG6_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 5.240e-37
Identity = 81/109 (74.31%), Postives = 94/109 (86.24%), Query Frame = 3 
Query:    3 PPTAAAALGCLAMAARDPEVATGFMADEVGGCDALVHALLSVEPDIPNADDLILRAAVLTAYLAEQSSLRPLLLLGGVADALTEALAVSKEKDSIGAARAADACASALE 329
            PPTAAAALGCLAMA RDPEVA  FMA+EV GC+ALV  LLSVEPDIPNA+DLILRAAV T+YLAE++S+RPLLLLGGVADAL+EAL V + K  + +ARAA+AC  AL+
Sbjct:  971 PPTAAAALGCLAMAVRDPEVAKNFMAEEVAGCEALVCGLLSVEPDIPNANDLILRAAVATSYLAEEASIRPLLLLGGVADALSEALLVVRGKQGMASARAAEACDDALK 1079
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10699.1490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIG6_ECTSI5.240e-3774.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10699contigM-pyrifera_M_contig10699:7024..9429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.8e-27
Seed eggNOG ortholog2880.D7FIG6
KEGG koko:K19870,ko:K21991
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein binding, bridging
EggNOG OGsKOG4151@1,KOG4151@2759,KOG4234@1,KOG4234@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110
Exons3
Model size854
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10699.1490.1prot_M-pyrifera_M_contig10699.1490.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10699 7062..8958 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.3806531-UTR-M-pyrifera_M_contig10699:7023..70611622815579.3806531-UTR-M-pyrifera_M_contig10699:7023..7061Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10699 7024..7061 +
1692277472.6748712-UTR-M-pyrifera_M_contig10699:7023..70611692277472.6748712-UTR-M-pyrifera_M_contig10699:7023..7061Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10699 7024..7061 +
1622815579.4348545-UTR-M-pyrifera_M_contig10699:8958..94291622815579.4348545-UTR-M-pyrifera_M_contig10699:8958..9429Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10699 8959..9429 +
1692277472.7221315-UTR-M-pyrifera_M_contig10699:8958..94291692277472.7221315-UTR-M-pyrifera_M_contig10699:8958..9429Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10699 8959..9429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.3920362-CDS-M-pyrifera_M_contig10699:7061..70821622815579.3920362-CDS-M-pyrifera_M_contig10699:7061..7082Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10699 7062..7082 +
1692277472.6872058-CDS-M-pyrifera_M_contig10699:7061..70821692277472.6872058-CDS-M-pyrifera_M_contig10699:7061..7082Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10699 7062..7082 +
1622815579.404893-CDS-M-pyrifera_M_contig10699:8137..82891622815579.404893-CDS-M-pyrifera_M_contig10699:8137..8289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10699 8138..8289 +
1692277472.698743-CDS-M-pyrifera_M_contig10699:8137..82891692277472.698743-CDS-M-pyrifera_M_contig10699:8137..8289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10699 8138..8289 +
1622815579.4196372-CDS-M-pyrifera_M_contig10699:8786..89581622815579.4196372-CDS-M-pyrifera_M_contig10699:8786..8958Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10699 8787..8958 +
1692277472.7112937-CDS-M-pyrifera_M_contig10699:8786..89581692277472.7112937-CDS-M-pyrifera_M_contig10699:8786..8958Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10699 8787..8958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10699.1490.1

>prot_M-pyrifera_M_contig10699.1490.1 ID=prot_M-pyrifera_M_contig10699.1490.1|Name=mRNA_M-pyrifera_M_contig10699.1490.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MAARDPEVATGFMADEVGGCDALVHALLSVEPDIPNADDLILRAAVLTAY
LAEQSSLRPLLLLGGVADALTEALAVSKEKDSIGAARAADACASALEALK
QEMPSIEEGLLALD*
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mRNA from alignment at M-pyrifera_M_contig10699:7024..9429+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10699.1490.1 ID=mRNA_M-pyrifera_M_contig10699.1490.1|Name=mRNA_M-pyrifera_M_contig10699.1490.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2406bp|location=Sequence derived from alignment at M-pyrifera_M_contig10699:7024..9429+ (Macrocystis pyrifera P11B4 male)
ATCCGCCCACGGCTGCCGCAGCTCTCGGTTGCCTCGCGATGGCGGCCAGG
GATCCTGAGGTGATTTCTTATTGTAGCATTTCTTGTTGCCGTATCGAAAC
GCTAGACTTAATGGCGGGCAGGGGTCCTGGGGTGATTTCTGTTTCCAGAT
TTCTTATTTTCGTCCCGCAACGCGAGCCTTTAACTACTCTCCTTGGACGA
TCGTCATCGCTCAGAACTGCAATGTTTGTGAGTCCATCTCACGGTACGGT
ATTGTGGTGTAGCGTGATATCTACTTTGTGCCTTGCATGTTGCCGTTCCG
TGGTGCACTGTTTGGTGGACGGTTTTTGATTGAAGAAACGGCCGCTCGAC
GAGACAAGATTTGAGTAGCCCCTAACCTTCCCGGACGGTAGTCCGGTGCC
GCTTAGCACCCTCGCTGCATTCATTCCACGTATGCAGGCAGTGGGTCGCC
TTGCCAGTTATCGTTCCGTTTCGCCGTGTCATGTGTAATGTGGGAAGTGC
TCGGGTTAAAGCCTCTTGGGAAATCAGAGGGAAGCAAATGCCGAAACGTT
ACGACGATTACAGCATTATACCATCGCCCACTTTTTTTTGCCTATCATAG
CATGCACTGCTACAGTAGGGTACGTGTCCGATGTGCAATGTGATGTGCAA
TGTGAAGAGCTGTACGGTACATGCGCAGCATGTGCATGCTCGTACGGCTG
CGCGCTATTCCTATGTAGCAGTACTGTTTGTATCATGTCCGTAGCATCGC
ACTTCTCACTTTTTTGTGGCTAAACTATATTCAAGTCATGCGTATTCTGT
CTAATTTCAGGATTGCTTTTGGTTTGATTCTACTTTTGATTTATTTCGAG
TGCCAGGTATTACTTTGTCGATTTGTTTGTTGTGTGTGCGTATTCAATAC
GTTGGCTGATCATTTCGCTTATCTCATTTCGTTGGCGTGTTTTTTCTGTC
TCACTGTCTGACCACCGAATTTTTATCTCTGTAGAAATAAAAAACCTGGA
CGGGCTCTGGCTGTACTGTTGTCGTTGGATAGAAAAATTAGTTTAGTATG
AAGCCAGCATACCCGAATAAACATGGGCCCCGATTGGATTGTTGCTTTGT
TGCTGGTTCTGCAGGTGGCAACGGGTTTTATGGCAGATGAGGTGGGCGGC
TGCGACGCCCTGGTACACGCACTTCTATCGGTGGAGCCGGACATCCCTAA
CGCAGACGACCTCATCCTCAGAGCGGCGGTTTTGACTGCCTATCTAGCGG
AGCAGAGTAGCTTAAGGTGCGAGCATGCCCTCGGCGTGCCGTTTCGTTTT
ACTTTTTTTGTATTCTCTTCTTTAGTGTCTCGCAGGTCCGCTCGTACACC
GCCGTGCAAAGAACATGTCCTCGACGTCCTGCTTTTGTTTTTGTTCCTTG
TTTTTCTTTGTTTGATAACCCGTAGGTCCGCCCCTACGTACACCGCCTTG
ATTTATTATGTTCTGCTGTAGGACGGCTTTTGCGCGCCGCCTGAACATGT
CTAGGCCTTAAGGAGGTATTAAGGACTTCGCTCCCGTTGTGGGGACTTGA
AACTTGTAACTAGAGTCATCATTAGGTCCCTGATGTACAGTAACTGCACG
ATACCCTACACTAAAGGGTCAACCCTCCTACCACTGCAAAAATTATCCCA
CACTAATTTGAAGTAGTTTTGACCCCAGAAATGTGGTTGCAGTTGTAGAT
CAGGGTTACAAGTTTCGCCGACATTTGTGGTCTCACGTGCTTGCCTCGCA
TGTGTTTATGCAGGCCCCTTCTGCTGCTTGGTGGAGTCGCCGATGCCCTG
ACCGAAGCGTTAGCTGTGTCGAAAGAGAAGGATAGCATAGGGGCCGCCAG
AGCTGCGGATGCTTGCGCGAGTGCACTTGAGGCTCTGAAGCAGGAGATGC
CCTCTATCGAAGAAGGTCTATTGGCTCTCGACTAACACCCTGTCTATGAG
ATGGGGATAGCCTCCGGTGCTTCATATCGACCGCTCAGAGCTCTGTGGTC
TATGCGGACGGTCGTGTCAGCGGTTGGGGGTAGTTAGGCGAGCACAGAGA
CGAGGTTTAACCCCTTCTCTAACTCGGCGTTTTCGTGTGAATGATGACAA
ATTGTTATAGACTGTCCGAGAGCTCTTACGTAGTGTGGTGCTTCGTGTAG
AAGGTGGACCAGGCCGCGTCCCTGACAAACAGGAGCAACGGGTGGCCCCA
TGCAGTTCATGGGGACGCGAGGGGTGGTGTTTCGACGACCGCTTAGGTTC
TTGACTACTGGTATATATGCTGTGGCAGTAGCGCGTGCAAATTTCCGAGC
AACGAATAGGATGGTTCAAAAGGGCGCGCAGCTACAGCGGTGGCTGGACT
CAGCGGAAAAACACAGCATTTTATCCGGAGATGACAACATGACAACCACA
CCTCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10699:7024..9429+

>mRNA_M-pyrifera_M_contig10699.1490.1 ID=mRNA_M-pyrifera_M_contig10699.1490.1|Name=mRNA_M-pyrifera_M_contig10699.1490.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig10699:7024..9429+ (Macrocystis pyrifera P11B4 male)
ATGGCGGCCAGGGATCCTGAGATGGCGGCCAGGGATCCTGAGGTGGCAAC
GGGTTTTATGGCAGATGAGGTGGGCGGCTGCGACGCCCTGGTACACGCAC
TTCTATCGGTGGAGCCGGACATCCCTAACGCAGACGACCTCATCCTCAGA
GCGGCGGTTTTGACTGCCTATCTAGCGGAGCAGAGTAGCTTAAGGTGGCA
ACGGGTTTTATGGCAGATGAGGTGGGCGGCTGCGACGCCCTGGTACACGC
ACTTCTATCGGTGGAGCCGGACATCCCTAACGCAGACGACCTCATCCTCA
GAGCGGCGGTTTTGACTGCCTATCTAGCGGAGCAGAGTAGCTTAAGGCCC
CTTCTGCTGCTTGGTGGAGTCGCCGATGCCCTGACCGAAGCGTTAGCTGT
GTCGAAAGAGAAGGATAGCATAGGGGCCGCCAGAGCTGCGGATGCTTGCG
CGAGTGCACTTGAGGCTCTGAAGCAGGAGATGCCCTCTATCGAAGAAGGT
CTATTGGCTCTCGACTAAGCCCCTTCTGCTGCTTGGTGGAGTCGCCGATG
CCCTGACCGAAGCGTTAGCTGTGTCGAAAGAGAAGGATAGCATAGGGGCC
GCCAGAGCTGCGGATGCTTGCGCGAGTGCACTTGAGGCTCTGAAGCAGGA
GATGCCCTCTATCGAAGAAGGTCTATTGGCTCTCGACTAA
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