mRNA_M-pyrifera_M_contig106950.1488.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106950.1488.1
Unique NamemRNA_M-pyrifera_M_contig106950.1488.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106950.1488.1 vs. uniprot
Match: A0A4D9DDN1_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDN1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.910e-28
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 1 
Query:    1 LYSSTKSWTFVYDTIYAHQDRKDDAHLGVGSSALSLGTTRSRPFLYGVTAASTAGLLATGLLADLPLPYYALSGLAATHLFWQVHTADWDDPQNLSRRFVANKFLAAAVLAAL 339
            LY+S  +WT VYDT+YAHQD++DD+ LG+ S+AL+ G + ++P L G++AA   GLL  G+ ADL  P+Y  +GL A+HL WQ+ TAD +   NLS RF +NK++   V  ++
Sbjct:  162 LYASAVAWTVVYDTLYAHQDKRDDSRLGLRSTALTFGDSGTKPVLTGLSAAMVGGLLLVGIEADLSWPFYLGTGLTASHLAWQLITADLNCSSNLSSRFESNKWMGGLVFGSI 274
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BLAST of mRNA_M-pyrifera_M_contig106950.1488.1 vs. uniprot
Match: A0A485KUC5_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUC5_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.370e-27
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 1 
Query:    1 LYSSTKSWTFVYDTIYAHQDRKDDAHLGVGSSALSLGTTRSRPFLYGVTAASTAGLLATGLLADLPLPYYALSGLAATHLFWQVHTADWDDPQNLSRRFVANKFLAAAVLAAL 339
            LY +  SWT VYDT+YAHQD+KDDA +GV S+AL  G  R++P L   + A+ AGL   G + DL LPYY     +A HL WQV+TAD  DP NL +RF +NK+  A V A++
Sbjct:  239 LYGAGVSWTLVYDTLYAHQDKKDDARIGVKSTALLFGD-RTKPILNAFSVATIAGLATAGYMVDLTLPYYVGLSASAIHLAWQVNTADIHDPINLQQRFGSNKWFGAMVFASI 350
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BLAST of mRNA_M-pyrifera_M_contig106950.1488.1 vs. uniprot
Match: A0A024U988_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U988_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.040e-26
Identity = 56/113 (49.56%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:    1 LYSSTKSWTFVYDTIYAHQDRKDDAHLGVGSSALSLGTTRSRPFLYGVTAASTAGLLATGLLADLPLPYYALSGLAATHLFWQVHTADWDDPQNLSRRFVANKFLAAAVLAAL 339
            LY +  SWT VYDT+YAHQD++DD  +GV S+AL  G   ++P L G  AA+ AGL   G + DL LPYY   GL+   L WQV+TA+ DDP NL +RF +NK+  A V  ++
Sbjct:  234 LYGAGVSWTLVYDTLYAHQDKEDDERIGVKSTALLFGGY-TKPILNGFAAATIAGLATAGYMVDLSLPYYLGLGLSGVQLAWQVNTANLDDPVNLQQRFGSNKWFGALVFGSI 345
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BLAST of mRNA_M-pyrifera_M_contig106950.1488.1 vs. uniprot
Match: A0A3R6XSW7_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XSW7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.440e-26
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:    1 LYSSTKSWTFVYDTIYAHQDRKDDAHLGVGSSALSLGTTRSRPFLYGVTAASTAGLLATGLLADLPLPYYALSGLAATHLFWQVHTADWDDPQNLSRRFVANKFLAAAVLAAL 339
            LY++  SWT VYDT+YAHQD+ DD  +G+ S+AL  G   ++P L G  AA+ AGL + G +ADL  P+Y   GL+   L WQV+TA  DDP NL  RF +NK+  A V A++
Sbjct:  149 LYAAGVSWTLVYDTLYAHQDKVDDKRVGIKSTALLFGD-HTQPILNGFAAATVAGLASAGYMADLSAPFYMGLGLSGLQLAWQVNTAKLDDPVNLQHRFGSNKWFGAMVFASI 260
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BLAST of mRNA_M-pyrifera_M_contig106950.1488.1 vs. uniprot
Match: F0YF86_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YF86_AURAN)

HSP 1 Score: 107 bits (268), Expect = 3.710e-26
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:    1 LYSSTKSWTFVYDTIYAHQDRKDDAHLGVGSSALSLGTTRSRPFLYGVTAASTAGLLATGLLADL-----PLPYYALSGLAATHLFWQVHTADWDDPQNLSRRFVANKFLAAAVL 330
            LY    +WT +YDT+YAHQD++DDA LG+GSSAL+LG   + PFL    AA+  GL A G  A L       P+YA   + A+HL WQV TAD  DP+NL+ RF +N  +A  VL
Sbjct:  166 LYGGCAAWTLLYDTLYAHQDKRDDAKLGLGSSALALGDASTPPFLRACGAAAVGGLAAAGCNAGLGDVAAAWPFYASLAVFASHLAWQVETADLGDPENLAARFKSNAAVAPVVL 280
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BLAST of mRNA_M-pyrifera_M_contig106950.1488.1 vs. uniprot
Match: W7TWG2_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWG2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.530e-26
Identity = 53/113 (46.90%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:    1 LYSSTKSWTFVYDTIYAHQDRKDDAHLGVGSSALSLGTTRSRPFLYGVTAASTAGLLATGLLADLPLPYYALSGLAATHLFWQVHTADWDDPQNLSRRFVANKFLAAAVLAAL 339
            LY+S  +WT VYDT+YAHQD++DD+ LG+ S+AL+ G + ++P L G++AA   GLL  G+ ADL   +Y  +GL A+HL WQ+ TAD +   NLS RF +NK++   V  ++
Sbjct:  293 LYASAVAWTVVYDTLYAHQDKRDDSRLGIRSTALTFGDSGTKPVLTGLSAAMVGGLLLVGIEADLSWHFYLGTGLTASHLAWQLITADLNCSSNLSARFESNKWVGGLVFGSI 405
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BLAST of mRNA_M-pyrifera_M_contig106950.1488.1 vs. uniprot
Match: W4G4W3_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4W3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.190e-25
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:    1 LYSSTKSWTFVYDTIYAHQDRKDDAHLGVGSSALSLGTTRSRPFLYGVTAASTAGLLATGLLADLPLPYYALSGLAATHLFWQVHTADWDDPQNLSRRFVANKFLAAAVLAAL 339
            LY++  SWT VYDT+YAHQD+ DD  +G+ S+AL  G   ++P L G  AA+ AGL + G +ADL  P+Y   GL+   L WQV+TA  DDP NL  RF +NK+  A V A++
Sbjct:  240 LYAAGVSWTLVYDTLYAHQDKVDDKRVGIKSTALLFGD-HTQPILNGFAAAAVAGLASAGYMADLSAPFYMGLGLSGLQLAWQVNTAKLDDPVNLQHRFGSNKWFGAIVFASI 351
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BLAST of mRNA_M-pyrifera_M_contig106950.1488.1 vs. uniprot
Match: A0A6G0WRN2_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WRN2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.820e-25
Identity = 53/113 (46.90%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:    1 LYSSTKSWTFVYDTIYAHQDRKDDAHLGVGSSALSLGTTRSRPFLYGVTAASTAGLLATGLLADLPLPYYALSGLAATHLFWQVHTADWDDPQNLSRRFVANKFLAAAVLAAL 339
            LY +  SWT VYDT+YAHQD+KDDA +GV S+AL  G   ++P L   +A + AGL   G + DL LP+Y     +A  L WQV+TAD +DP NL +RF +NK+  A +  ++
Sbjct:  228 LYGAGVSWTLVYDTLYAHQDKKDDARIGVKSTALLFGEN-TKPILNAFSAVTIAGLATAGYMVDLSLPFYLGLSASAAQLAWQVNTADINDPVNLQKRFGSNKWFGALIFTSI 339
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BLAST of mRNA_M-pyrifera_M_contig106950.1488.1 vs. uniprot
Match: A0A2D4BJ81_PYTIN (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJ81_PYTIN)

HSP 1 Score: 105 bits (261), Expect = 6.020e-25
Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:    1 LYSSTKSWTFVYDTIYAHQDRKDDAHLGVGSSALSLGTTRSRPFLYGVTAASTAGLLATGLLADLPLPYYALSGLAATHLFWQVHTADWDDPQNLSRRFVANKFLAAAVLAAL 339
            LY+   +WT VYDT+YAHQD+KDD H+GV S+AL  G  ++ P L   +AA+ AG    G LA L  P+YA     A HL WQV+TA  DDP NL +RF +NK+  A +  ++
Sbjct:  193 LYAGGVAWTLVYDTLYAHQDKKDDQHIGVRSTALLFGE-KTTPILNAFSAAAIAGFGTAGYLAGLDWPFYAGLAGGAAHLAWQVNTAKLDDPVNLQQRFASNKWFGALMFGSI 304
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BLAST of mRNA_M-pyrifera_M_contig106950.1488.1 vs. uniprot
Match: A0A067BUS5_SAPPC (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BUS5_SAPPC)

HSP 1 Score: 102 bits (254), Expect = 7.150e-24
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:    1 LYSSTKSWTFVYDTIYAHQDRKDDAHLGVGSSALSLGTTRSRPFLYGVTAASTAGLLATGLLADLPLPYYALSGLAATHLFWQVHTADWDDPQNLSRRFVANKFLAAAVLAAL 339
            LY++  SWT VYDT+YAHQD+ DD  +GV S+AL L   +++P L   + A+ AGL  +G + D+  P+Y     AA HL WQV+TA  DDP NL  RF +NK+  A V   +
Sbjct:  200 LYAAGVSWTLVYDTLYAHQDKTDDKRIGVKSTAL-LFADKTQPILNAFSVATIAGLGLSGYMVDMGAPFYGALAAAAGHLAWQVNTAKLDDPINLQTRFASNKYFGALVFTGI 311
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106950.1488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9DDN1_9STRA3.910e-2847.794-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A485KUC5_9STRA2.370e-2751.334-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A024U988_9STRA2.040e-2649.564-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A3R6XSW7_9STRA2.440e-2648.674-hydroxybenzoate polyprenyltransferase, mitochond... [more]
F0YF86_AURAN3.710e-2649.57Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
W7TWG2_9STRA4.530e-2646.904-hydroxybenzoate polyprenyltransferase, mitochond... [more]
W4G4W3_9STRA1.190e-2548.674-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A6G0WRN2_9STRA3.820e-2546.904-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A2D4BJ81_PYTIN6.020e-2547.794-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A067BUS5_SAPPC7.150e-2446.024-hydroxybenzoate polyprenyltransferase, mitochond... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106950contigM-pyrifera_M_contig106950:9..359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue4e-22
Seed eggNOG ortholog157072.XP_008868355.1
Preferred nameCOQ2
KEGG rclassRC00209,RC02895
KEGG koko:K06125,ko:K07964,ko:K13412
KEGG ReactionR05000,R05616,R07273,R07811
KEGG Pathwayko00130,ko00531,ko01100,ko01110,ko04626,ko05145,ko05205,map00130,map00531,map01100,map01110,map04626,map05145,map05205
KEGG ModuleM00078,M00128
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0002083,GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005975,GO:0006066,GO:0006071,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008412,GO:0009058,GO:0009059,GO:0009108,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009987,GO:0010259,GO:0010467,GO:0016020,GO:0016021,GO:0016070,GO:0016740,GO:0016765,GO:0018130,GO:0019400,GO:0019438,GO:0019748,GO:0019751,GO:0019866,GO:0030880,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032592,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0042180,GO:0042181,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044455,GO:0044464,GO:0044550,GO:0046483,GO:0048856,GO:0050829,GO:0050830,GO:0050832,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0098542,GO:0098573,GO:1900558,GO:1900560,GO:1900561,GO:1900563,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901661,GO:1901663,GO:1902494,GO:1990234
EggNOG free text desc.4-hydroxybenzoate decaprenyltransferase activity
EggNOG OGsCOG0382@1,KOG1381@2759
EC2.5.1.39,2.7.11.1,3.2.1.166
COG Functional cat.H
CAZyGH79
BiGG ReactioniMM904.YNR041C,iND750.YNR041C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01001,ko01006
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.3076775-CDS-M-pyrifera_M_contig106950:8..3591622815579.3076775-CDS-M-pyrifera_M_contig106950:8..359Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106950 9..359 +
1692277472.6536126-CDS-M-pyrifera_M_contig106950:8..3591692277472.6536126-CDS-M-pyrifera_M_contig106950:8..359Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106950 9..359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106950.1488.1prot_M-pyrifera_M_contig106950.1488.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106950 9..359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106950.1488.1

>prot_M-pyrifera_M_contig106950.1488.1 ID=prot_M-pyrifera_M_contig106950.1488.1|Name=mRNA_M-pyrifera_M_contig106950.1488.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
LYSSTKSWTFVYDTIYAHQDRKDDAHLGVGSSALSLGTTRSRPFLYGVTA
ASTAGLLATGLLADLPLPYYALSGLAATHLFWQVHTADWDDPQNLSRRFV
ANKFLAAAVLAALCIS*
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mRNA from alignment at M-pyrifera_M_contig106950:9..359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106950.1488.1 ID=mRNA_M-pyrifera_M_contig106950.1488.1|Name=mRNA_M-pyrifera_M_contig106950.1488.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig106950:9..359+ (Macrocystis pyrifera P11B4 male)
CTCTACTCTTCGACAAAGAGCTGGACGTTTGTGTACGACACGATCTACGC
GCACCAGGACCGCAAGGACGACGCTCATTTGGGAGTGGGGTCCTCGGCTC
TGTCTCTGGGCACGACCCGCTCCCGCCCATTCCTCTACGGCGTGACAGCC
GCCTCCACAGCAGGCCTGCTCGCCACGGGCCTCCTCGCAGACCTCCCCCT
GCCCTACTACGCACTCTCCGGCCTCGCGGCAACACACCTCTTCTGGCAAG
TCCACACCGCAGACTGGGACGATCCCCAAAACCTCTCGCGCAGATTCGTC
GCCAACAAATTCCTCGCAGCAGCCGTCCTTGCTGCACTATGCATCTCCTA
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106950:9..359+

>mRNA_M-pyrifera_M_contig106950.1488.1 ID=mRNA_M-pyrifera_M_contig106950.1488.1|Name=mRNA_M-pyrifera_M_contig106950.1488.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig106950:9..359+ (Macrocystis pyrifera P11B4 male)
CTCTACTCTTCGACAAAGAGCTGGACGTTTGTGTACGACACGATCTACGC
GCACCAGGACCGCAAGGACGACGCTCATTTGGGAGTGGGGTCCTCGGCTC
TGTCTCTGGGCACGACCCGCTCCCGCCCATTCCTCTACGGCGTGACAGCC
GCCTCCACAGCAGGCCTGCTCGCCACGGGCCTCCTCGCAGACCTCCCCCT
GCCCTACTACGCACTCTCCGGCCTCGCGGCAACACACCTCTTCTGGCAAG
TCCACACCGCAGACTGGGACGATCCCCAAAACCTCTCGCGCAGATTCGTC
GCCAACAAATTCCTCGCAGCAGCCGTCCTTGCTGCACTATGCATCTCCTA
ACTCTACTCTTCGACAAAGAGCTGGACGTTTGTGTACGACACGATCTACG
CGCACCAGGACCGCAAGGACGACGCTCATTTGGGAGTGGGGTCCTCGGCT
CTGTCTCTGGGCACGACCCGCTCCCGCCCATTCCTCTACGGCGTGACAGC
CGCCTCCACAGCAGGCCTGCTCGCCACGGGCCTCCTCGCAGACCTCCCCC
TGCCCTACTACGCACTCTCCGGCCTCGCGGCAACACACCTCTTCTGGCAA
GTCCACACCGCAGACTGGGACGATCCCCAAAACCTCTCGCGCAGATTCGT
CGCCAACAAATTCCTCGCAGCAGCCGTCCTTGCTGCACTATGCATCTCCT
AA
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