mRNA_M-pyrifera_M_contig106932.1487.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106932.1487.1
Unique NamemRNA_M-pyrifera_M_contig106932.1487.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106932.1487.1 vs. uniprot
Match: A0A7V7EAC3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V7EAC3_9BACT)

HSP 1 Score: 113 bits (282), Expect = 3.440e-28
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  202 RANAGHDAARAELVRKEPYFYKQYEYYPDGSTLMEVTTRETESRTAPQVADVKLRKQRFVTQLHRKKDEARSDEEFLRDTGNETRTYELRNGRWRRVSSLF 504
            RA++  +     ++ + PY+YK+YE YPDGS   E+  +ETESRTAP VADVKL K RF T+ HR  ++AR D EFLRDTG ET TYE RNG+W R  S+F
Sbjct:   66 RASSDSEKREHRIIARAPYYYKEYEVYPDGSEGYEILIQETESRTAPYVADVKLAKLRFATRFHRTLEDARQDAEFLRDTGTETITYEWRNGQWVRAGSIF 166          
BLAST of mRNA_M-pyrifera_M_contig106932.1487.1 vs. uniprot
Match: A0A7Y5CAV4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CAV4_9BACT)

HSP 1 Score: 106 bits (264), Expect = 1.560e-25
Identity = 55/114 (48.25%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  163 EAELRRLVTRDVDRANAGHDAARAELVRKEPYFYKQYEYYPDGSTLMEVTTRETESRTAPQVADVKLRKQRFVTQLHRKKDEARSDEEFLRDTGNETRTYELRNGRWRRVSSLF 504
            EA LR  V   +         A  +L  K+PY++K+Y  YP GS    +  +ETESRT P  A VK+ KQRF T+LHRK+DEA +D  + RDTG ET T+E+RNGRW R  S+F
Sbjct:   50 EARLREAVDSYIQSTGQASSDATGKLQHKKPYYFKEYYLYPSGSAQAGIDIQETESRTVPYRASVKVDKQRFSTKLHRKRDEAVADSNYARDTGKETLTFEMRNGRWYRAGSMF 163          
BLAST of mRNA_M-pyrifera_M_contig106932.1487.1 vs. uniprot
Match: A0A1V5Z1T0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5Z1T0_9BACT)

HSP 1 Score: 104 bits (259), Expect = 7.520e-25
Identity = 65/168 (38.69%), Postives = 100/168 (59.52%), Query Frame = 1
Query:    1 MKPLLSAAVCVILLGMLSASCARLPFMGERTESSDTSTDASATESSDVVSVDGIEAELRRLVTRDVDRANAGHDAARAELVRKEPYFYKQYEYYPDGSTLMEVTTRETESRTAPQVADVKLRKQRFVTQLHRKKDEARSDEEFLRDTGNETRTYELRNGRWRRVSSLF 504
            MK  L  ++ V+LL  L++ CAR     +R +S   ST+ S   S++    +G + EL  L+   +  +   +DAA+  +V + PY+ K+Y  Y +G    ++  RE ES+T P +A+V + K RF T++HRKK+ AR D EF+RDTG E   YEL NGRW R+ ++F
Sbjct:    1 MKLFLRMSMLVLLLIPLTSGCAR-----DRNQSG-ISTETSGFSSAE----EGAKKELELLIKNHIQTSKTYNDAAQVPVVYRRPYYLKEYSVYFNGPDAFDIAYRELESKTRPLMAEVTIEKVRFSTKMHRKKNLAREDHEFVRDTGVEKMVYELHNGRWTRIGAIF 158          
BLAST of mRNA_M-pyrifera_M_contig106932.1487.1 vs. uniprot
Match: A0A847GCH0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847GCH0_9BACT)

HSP 1 Score: 102 bits (255), Expect = 3.040e-24
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 1
Query:  172 LRRLVTRDVDRANAGHDAARAELVRKEPYFYKQYEYYPDGSTLMEVTTRETESRTAPQVADVKLRKQRFVTQLHRKKDEARSDEEFLRDTGNETRTYELRNGRWRRVSSLF 504
            LR +V   V       ++   +LVR+ PYFY+++  YP GS  ME+T RE +SRT P   +V+L K R+ T++HR + EA  D  F+RDTG E+  YELRNGRW RV SLF
Sbjct:   48 LRGIVAEHVRTEQRRGNSGDPDLVRRRPYFYREFVEYPGGSEQMEITLRENDSRTRPLTGEVRLDKVRYSTRMHRDRGEALGDGAFIRDTGVESLNYELRNGRWHRVGSLF 158          
BLAST of mRNA_M-pyrifera_M_contig106932.1487.1 vs. uniprot
Match: A0A7C1CPK1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1CPK1_9BACT)

HSP 1 Score: 102 bits (255), Expect = 3.120e-24
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  163 EAELRRLVTRDVDRANAGHDAARAELVRKEPYFYKQYEYYPDGSTLMEVTTRETESRTAPQVADVKLRKQRFVTQLHRKKDEARSDEEFLRDTGNETRTYELRNGRWRRVSSLF 504
            E  LR +V   +       DA+ A +VR+ PY++++Y  YPDG     +  RE +SR  P +A+VK+ K R+ T++HRK++ A SD +FLRDTG ET  +ELR+GRW RV ++F
Sbjct:   47 EQRLREIVREHIQAEQRVTDASNAPIVRRRPYYFREYSVYPDGLNGFVIDFREIDSRIRPLMAEVKINKIRYSTRMHRKRNAAESDTDFLRDTGEETLVFELRSGRWTRVGAIF 160          
BLAST of mRNA_M-pyrifera_M_contig106932.1487.1 vs. uniprot
Match: A0A7V3DH08_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V3DH08_9BACT)

HSP 1 Score: 102 bits (253), Expect = 1.180e-23
Identity = 58/116 (50.00%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  163 EAELRRLVTRDVDRA--NAGHDAARAELVRKEPYFYKQYEYYPDGSTLMEVTTRETESRTAPQVADVKLRKQRFVTQLHRKKDEARSDEEFLRDTGNETRTYELRNGRWRRVSSLF 504
            EA L  LV   V  A  NAG    R  ++R++PYF+KQY+ YP+G+   +   +  ESR+ P V DV L KQRF+T+ H K+ +A SD  FLR+TG ET T+ELR+GRW RV SLF
Sbjct:   44 EAILLELVKEHVAAAARNAGEQKNR--VIRRKPYFFKQYDVYPEGAENAKALVQAQESRSIPWVGDVSLPKQRFITRFHAKRRDAESDSNFLRETGRETITFELRSGRWVRVGSLF 157          
BLAST of mRNA_M-pyrifera_M_contig106932.1487.1 vs. uniprot
Match: A0A7V2TSJ6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2TSJ6_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 2.140e-19
Identity = 49/119 (41.18%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  148 SVDGIEAELRRLVTRDVDRANAGHDAARAELVRKEPYFYKQYEYYPDGSTLMEVTTRETESRTAPQVADVKLRKQRFVTQLHRKKDEARSDEEFLRDTGNETRTYELRNGRWRRVSSLF 504
            S++    +L +LV   V+      ++++  L+ K PY+Y++Y  YPD      +  RE +++T P  A+V L K RF TQ+HR  + AR D  F RDTG E   YELRNGRWRRV S++
Sbjct:   51 SIEECRQDLEKLVAAHVNEQLRQGNSSQPALIHKRPYYYREYVEYPDPDN-PRIIIRENDTKTRPLSAEVTLDKIRFSTQMHRSANNAREDGRFFRDTGVEKLNYELRNGRWRRVGSIY 168          
BLAST of mRNA_M-pyrifera_M_contig106932.1487.1 vs. uniprot
Match: A0A7Z9LNB2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Z9LNB2_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 9.190e-18
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  163 EAELRRLVTRDVDRANAGHDAARAELVRKEPYFYKQYEYYPDGSTLMEVTTRETESRTAPQVADVKLRKQRFVTQLHRKKDEARSDEEFLRDTGNETRTYELRNGRWRRVSSLF 504
            E +L  LV   + +      A  A++  ++PYFY++Y  YP+G     +  R +ES T P  A V+L+KQR+VT+  RK++  R D  F   +G ET +YELR+GRWR V +L+
Sbjct:   46 EDKLHSLVDDSLTKLQRYDSAENAQMTFRKPYFYREYVAYPEGVDNYSLDIRASESLTTPYTAQVRLKKQRYVTKFQRKRELTRRDTVFYESSGYETLSYELRHGRWREVGTLY 159          
BLAST of mRNA_M-pyrifera_M_contig106932.1487.1 vs. uniprot
Match: A0A7C3WS15_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3WS15_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 1.170e-16
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  169 ELRRLVTRDVDRANAGHDAARAELVRKEPYFYKQYEYYPDGSTLMEVTTRETESRTAPQVADVKLRKQRFVTQLHRKKDEARSDEEFLRDTGNETRTYELRNGRWRRVSSLF 504
            EL+++V  ++  A A     +  + RK PYF+K Y  Y +     E+  +ET+S++ P +A ++L K  + T+LH+ K +A  D   +R +G ET TYELRNGRW +V SLF
Sbjct:   56 ELQQIVKNEIKAAMA---VDKNYVYRKRPYFWKNYSSYNNTEGPYEINIQETDSKSKPYIAKIELEKTIYYTKLHKSKRDAEEDTNIIRSSGKETLTYELRNGRWIKVGSLF 164          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106932.1487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7V7EAC3_9BACT3.440e-2855.45Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7Y5CAV4_9BACT1.560e-2548.25Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1V5Z1T0_9BACT7.520e-2538.69Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A847GCH0_9BACT3.040e-2447.75Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C1CPK1_9BACT3.120e-2443.86Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7V3DH08_9BACT1.180e-2350.00Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7V2TSJ6_9BACT2.140e-1941.18Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7Z9LNB2_9BACT9.190e-1839.47Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C3WS15_9BACT1.170e-1639.29Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106932contigM-pyrifera_M_contig106932:120..623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size504
Cds size504
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.2575467-CDS-M-pyrifera_M_contig106932:119..6231622815579.2575467-CDS-M-pyrifera_M_contig106932:119..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106932 120..623 +
1692277472.6443417-CDS-M-pyrifera_M_contig106932:119..6231692277472.6443417-CDS-M-pyrifera_M_contig106932:119..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106932 120..623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106932.1487.1prot_M-pyrifera_M_contig106932.1487.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106932 120..623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106932.1487.1

>prot_M-pyrifera_M_contig106932.1487.1 ID=prot_M-pyrifera_M_contig106932.1487.1|Name=mRNA_M-pyrifera_M_contig106932.1487.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
MKPLLSAAVCVILLGMLSASCARLPFMGERTESSDTSTDASATESSDVVS
VDGIEAELRRLVTRDVDRANAGHDAARAELVRKEPYFYKQYEYYPDGSTL
MEVTTRETESRTAPQVADVKLRKQRFVTQLHRKKDEARSDEEFLRDTGNE
TRTYELRNGRWRRVSSLF
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mRNA from alignment at M-pyrifera_M_contig106932:120..623+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106932.1487.1 ID=mRNA_M-pyrifera_M_contig106932.1487.1|Name=mRNA_M-pyrifera_M_contig106932.1487.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig106932:120..623+ (Macrocystis pyrifera P11B4 male)
ATGAAGCCACTCTTGTCTGCCGCCGTGTGCGTGATTCTTCTGGGAATGCT CTCGGCATCCTGCGCCCGTTTGCCATTCATGGGCGAGCGAACAGAATCCA GTGATACGTCAACCGATGCGTCGGCTACGGAATCCAGCGACGTTGTGTCT GTTGATGGCATCGAGGCGGAGTTGCGGCGATTGGTTACCCGCGATGTCGA TCGCGCCAATGCTGGTCACGACGCTGCGCGCGCGGAACTCGTCCGCAAAG AACCATACTTCTACAAACAGTATGAATACTATCCAGATGGAAGTACGTTG ATGGAGGTGACCACGCGCGAAACGGAGTCCCGCACCGCCCCCCAGGTGGC CGATGTGAAACTGCGCAAGCAGCGATTCGTTACGCAATTACATCGAAAGA AAGATGAAGCGCGGTCGGACGAAGAGTTTTTGCGGGACACGGGGAACGAG ACCCGAACTTATGAATTGCGAAACGGACGATGGAGACGGGTGAGTAGCTT GTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106932:120..623+

>mRNA_M-pyrifera_M_contig106932.1487.1 ID=mRNA_M-pyrifera_M_contig106932.1487.1|Name=mRNA_M-pyrifera_M_contig106932.1487.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig106932:120..623+ (Macrocystis pyrifera P11B4 male)
ATGAAGCCACTCTTGTCTGCCGCCGTGTGCGTGATTCTTCTGGGAATGCT
CTCGGCATCCTGCGCCCGTTTGCCATTCATGGGCGAGCGAACAGAATCCA
GTGATACGTCAACCGATGCGTCGGCTACGGAATCCAGCGACGTTGTGTCT
GTTGATGGCATCGAGGCGGAGTTGCGGCGATTGGTTACCCGCGATGTCGA
TCGCGCCAATGCTGGTCACGACGCTGCGCGCGCGGAACTCGTCCGCAAAG
AACCATACTTCTACAAACAGTATGAATACTATCCAGATGGAAGTACGTTG
ATGGAGGTGACCACGCGCGAAACGGAGTCCCGCACCGCCCCCCAGGTGGC
CGATGTGAAACTGCGCAAGCAGCGATTCGTTACGCAATTACATCGAAAGA
AAGATGAAGCGCGGTCGGACGAAGAGTTTTTGCGGGACACGGGGAACGAG
ACCCGAACTTATGAATTGCGAAACGGACGATGGAGACGGGTGAGTAGCTT
GTTCATGAAGCCACTCTTGTCTGCCGCCGTGTGCGTGATTCTTCTGGGAA
TGCTCTCGGCATCCTGCGCCCGTTTGCCATTCATGGGCGAGCGAACAGAA
TCCAGTGATACGTCAACCGATGCGTCGGCTACGGAATCCAGCGACGTTGT
GTCTGTTGATGGCATCGAGGCGGAGTTGCGGCGATTGGTTACCCGCGATG
TCGATCGCGCCAATGCTGGTCACGACGCTGCGCGCGCGGAACTCGTCCGC
AAAGAACCATACTTCTACAAACAGTATGAATACTATCCAGATGGAAGTAC
GTTGATGGAGGTGACCACGCGCGAAACGGAGTCCCGCACCGCCCCCCAGG
TGGCCGATGTGAAACTGCGCAAGCAGCGATTCGTTACGCAATTACATCGA
AAGAAAGATGAAGCGCGGTCGGACGAAGAGTTTTTGCGGGACACGGGGAA
CGAGACCCGAACTTATGAATTGCGAAACGGACGATGGAGACGGGTGAGTA
GCTTGTTC
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