mRNA_M-pyrifera_M_contig100651.148.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100651.148.1
Unique NamemRNA_M-pyrifera_M_contig100651.148.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100651.148.1 vs. uniprot
Match: A0A7S0YZ46_9CRYP (Coatomer subunit delta (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YZ46_9CRYP)

HSP 1 Score: 125 bits (314), Expect = 1.420e-32
Identity = 76/150 (50.67%), Postives = 104/150 (69.33%), Query Frame = 1
Query:    1 RQHTYVETESVRYLFHPLDSLYVVVITTRGSNIVEDLATLSLCAKTVSEFGSEGAVLDEGAVRRNALELVFALDELVTTGGLSEHLTLAEVRKNMAMESHEERLHDLIRESKEHDAKTTAARKAKEIGREKSEAARAGLPARSGVYSGVG 450
            +QHTYVETESVRY++ P++SLY+++IT + SNI+EDL TL L AK V EF  E   LDE  VR    +L+ A DE++  G   E+L L +V+  + MESHEE+LH +IR+SK ++AK  A RKA  I + K++ A+AGL   SG  SG+G
Sbjct:   59 KQHTYVETESVRYVYQPMESLYLLLITNKSSNIMEDLETLRLLAKLVPEFCPE---LDEDGVREQCFDLILAFDEVLAMGH-RENLNLQQVKTALEMESHEEKLHQMIRQSKINEAKEEAKRKAVSIDQNKAQRAKAGL---SGSSSGMG 201          
BLAST of mRNA_M-pyrifera_M_contig100651.148.1 vs. uniprot
Match: A0A7S0XFC2_9STRA (Coatomer subunit delta (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XFC2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.470e-32
Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = 1
Query:    1 RQHTYVETESVRYLFHPLDSLYVVVITTRGSNIVEDLATLSLCAKTVSEFGSEGAVLDEGAVRRNALELVFALDELVTTGGLSEHLTLAEVRKNMAMESHEERLHDLIRESKEHDAKTTA 360
            +QHTY+ETESVRYL+ PLD+LY+++IT R SNI+EDL TL L +K + +       L E  +     +L+FA DE++TTGG  E +TLA+++ N+ MESHEE+LH +I++SK   AK  A
Sbjct:   45 KQHTYIETESVRYLYQPLDNLYILLITNRASNIIEDLETLKLLSKVIPDTIGSANNLSEEKISDKCFDLIFAFDEVITTGGYKEPITLAQIKSNLEMESHEEKLHIMIKQSKMESAKDQA 164          
BLAST of mRNA_M-pyrifera_M_contig100651.148.1 vs. uniprot
Match: A0A383VBM7_TETOB (Coatomer subunit delta n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VBM7_TETOB)

HSP 1 Score: 125 bits (314), Expect = 1.470e-31
Identity = 72/141 (51.06%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    1 RQHTYVETESVRYLFHPLDSLYVVVITTRGSNIVEDLATLSLCAKTVSEFGSEGAVLDEGAVRRNALELVFALDELVTTGGLSEHLTLAEVRKNMAMESHEERLHDLIRESKEHDAKTTAARKAKEIGREKSEAARAGLPA 423
            +QHTYVETE+VRY++ P++ ++++++T RGSNI+EDL TL L +K V E+   GA LDE AV R A +LVFA DE+++ G   E++T+ +V++N  MESHEE+LH +I +SK +D K    RKA+EI + K +A RA LPA
Sbjct:   44 KQHTYVETENVRYVYQPIEGMFLLLVTNRGSNILEDLDTLRLLSKLVPEYAG-GAGLDEEAVSRAAFDLVFAFDEVISHGH-KENITVQQVKQNCEMESHEEKLHKMIIQSKINDTKDIMKRKAQEIDKHKIDAKRA-LPA 181          
BLAST of mRNA_M-pyrifera_M_contig100651.148.1 vs. uniprot
Match: A0A813B9C5_9DINO (Coatomer subunit delta (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B9C5_9DINO)

HSP 1 Score: 123 bits (308), Expect = 7.460e-31
Identity = 75/159 (47.17%), Postives = 109/159 (68.55%), Query Frame = 1
Query:    1 RQHTYVETESVRYLFHPLDSLYVVVITTRGSNIVEDLATLSLCAKTVSE-FGSEGAVLDEGAVRRNALELVFALDELVTTGGLSEHLTLAEVRKNMAMESHEERLHDLIRESKEHDAKTTAARKAKEIGREKSEAARA---GLPAR----SGVYSGVGS 453
            +QHTYVE+E+VRY++HPL+ LY+V+ITT+ SNIVEDL T+ + +K V E  G +     E ++  +A ELVFALDE +T  G  E   L ++R N+AM+SHEE+L +L++ESK+  AKT A R+ +E+ R+++E A+A   G P +     G Y GV S
Sbjct:   16 KQHTYVESEAVRYVYHPLEQLYLVLITTKSSNIVEDLDTIRMLSKLVPEQLGMDAP--SEASILAHAFELVFALDEAITADGHKELGDLDDIRTNLAMDSHEEKLANLVKESKQAQAKTEATRREEEMRRKRAEEAKAVADGAPPKPASSGGRYGGVSS 172          
BLAST of mRNA_M-pyrifera_M_contig100651.148.1 vs. uniprot
Match: M2W722_GALSU (Coatomer subunit delta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W722_GALSU)

HSP 1 Score: 125 bits (315), Expect = 3.420e-30
Identity = 71/133 (53.38%), Postives = 94/133 (70.68%), Query Frame = 1
Query:    1 RQHTYVETESVRYLFHPLDSLYVVVITTRGSNIVEDLATLSLCAKTVSEFGSEGAVLDEGAVRRNALELVFALDELVTTGGLSEHLTLAEVRKNMAMESHEERLHDLIRESKEHDAKTTAARKAKEIGREKSE 399
            +QHTYVETESVRYL+ PL+SLYVV+ITT+GSN+VEDL TL L  K + E+    A LDE ++   A EL+ A DE+V  GGL E + + +V     M SHEE+L ++I+ESK  +AK  A R+A+ + REKSE
Sbjct:   44 KQHTYVETESVRYLYQPLESLYVVIITTKGSNVVEDLETLRLICKLIPEYLPIYASLDEESIVEAAFELIAAFDEVVDWGGLRESVDVQQVHALTEMFSHEEKLANMIKESKMLEAKEVAKRRAESLSREKSE 176          
BLAST of mRNA_M-pyrifera_M_contig100651.148.1 vs. uniprot
Match: A0A6J1X4V9_GALME (Coatomer subunit delta n=2 Tax=Ditrysia TaxID=37567 RepID=A0A6J1X4V9_GALME)

HSP 1 Score: 116 bits (291), Expect = 2.920e-29
Identity = 66/143 (46.15%), Postives = 98/143 (68.53%), Query Frame = 1
Query:    1 RQHTYVETESVRYLFHPLDSLYVVVITTRGSNIVEDLATLSLCAKTVSEFGSEGAVLDEGAVRRNALELVFALDELVTTGGLSEHLTLAEVRKNMAMESHEERLHDLIRESKEHDAKTTAARKAKEIGREKSEAARAGLPARS 429
            RQHT+VETESVRY++ PLD LY+++ITT+ SNI+EDL TL L ++ V E+ ++   L E  +   A  L+FA DE+V  G   E + LA+VR  + M+SHEE+++  +R+++E +A      +AKE+ RE+ EAA+ G P RS
Sbjct:   44 RQHTFVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCTQ---LTEAEILNQAFNLLFAFDEIVALG-YRESVNLAQVRSFVEMDSHEEKIYQAVRQTQEREAANRMRERAKELQRERLEAAKRGQPPRS 182          
BLAST of mRNA_M-pyrifera_M_contig100651.148.1 vs. uniprot
Match: UPI000B3A7082 (coatomer subunit delta n=1 Tax=Helicoverpa armigera TaxID=29058 RepID=UPI000B3A7082)

HSP 1 Score: 119 bits (299), Expect = 5.550e-29
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 1
Query:    1 RQHTYVETESVRYLFHPLDSLYVVVITTRGSNIVEDLATLSLCAKTVSEFGSEGAVLDEGAVRRNALELVFALDELVTTGGLSEHLTLAEVRKNMAMESHEERLHDLIRESKEHDAKTTAARKAKEIGREKSEAARAGLPARS 429
            RQHT+VETESVRY++ PLD LY+++ITT+ SNI+EDL TL L ++ V E+ ++   L E  V   A  L+FA DE+V  G   E + LA+VR  + M+SHEE+++  +R+++E +A      +AKE+ RE+ EAA+ GLP RS
Sbjct:   44 RQHTFVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCTQ---LTEAEVLNQAFNLLFAFDEIVALG-YRESVNLAQVRSFVEMDSHEEKIYQAVRQTQEREAANRMRERAKELQRERLEAAKRGLPTRS 182          
BLAST of mRNA_M-pyrifera_M_contig100651.148.1 vs. uniprot
Match: A0A2P6TGH6_CHLSO (Coatomer subunit delta n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGH6_CHLSO)

HSP 1 Score: 123 bits (308), Expect = 6.920e-29
Identity = 68/136 (50.00%), Postives = 100/136 (73.53%), Query Frame = 1
Query:    1 RQHTYVETESVRYLFHPLDSLYVVVITTRGSNIVEDLATLSLCAKTVSEFGSEGAVLDEGAVRRNALELVFALDELVTTGGLSEHLTLAEVRKNMAMESHEERLHDLIRESKEHDAKTTAARKAKEIGREKSEAAR 408
            +QHTYVETE+VRYL+ P++S+Y+V++T +GSNI+EDL TL LC K V E+    A L+E  V   A +L+FA DE+++ G   E++T+A+VR+N  MESHEE+LH +I +SK ++ K    +KA+EI + K EAA+
Sbjct:   44 KQHTYVETENVRYLYQPIESMYLVLVTNKGSNILEDLETLRLCGKVVPEYV---AALEEEEVAAAAFDLLFAFDEVISLGH-KENVTVAQVRQNTEMESHEEKLHKMIIQSKINETKDLMKKKAQEIEKTKIEAAK 175          
BLAST of mRNA_M-pyrifera_M_contig100651.148.1 vs. uniprot
Match: A0A7S2S5S1_9STRA (Coatomer subunit delta n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S5S1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.640e-28
Identity = 65/127 (51.18%), Postives = 92/127 (72.44%), Query Frame = 1
Query:    1 RQHTYVETESVRYLFHPLDSLYVVVITTRGSNIVEDLATLSLCAKTVSEFGSEGAVLDEGAVRRNALELVFALDELVTTGGLSEHLTLAEVRKNMAMESHEERLHDLIRESKEHDAKTTAARKAKEI 381
            +QHTYVET S+RY++ P++ LY++++TTRGSNIV+DL TL L +K V+E+      + E  V RN  ELVFA DE++T G   E++TL  +R N+ MESHEE+LH +I++SK ++AK  A RKA  I
Sbjct:   49 KQHTYVETGSIRYVYQPMEGLYLLLVTTRGSNIVQDLDTLRLLSKVVAEYSH----VSEEDVSRNVFELVFAFDEVITLG-YKENITLQGIRTNLEMESHEEKLHMMIKQSKMNEAKDEARRKAASI 170          
BLAST of mRNA_M-pyrifera_M_contig100651.148.1 vs. uniprot
Match: A0A059LMC7_9CHLO (Coatomer subunit delta (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LMC7_9CHLO)

HSP 1 Score: 120 bits (301), Expect = 1.650e-28
Identity = 67/146 (45.89%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    1 RQHTYVETESVRYLFHPLDSLYVVVITTRGSNIVEDLATLSLCAKTVSEFGSEGA------VLDEGAVRRNALELVFALDELVTTGGLSEHLTLAEVRKNMAMESHEERLHDLIRESKEHDAKTTAARKAKEIGREKSEAARAGLP 420
            +QHTYV+T++VRYL+ PL+++Y+V++T R SNI+EDL TL LC K V++              DE AVRR A +L+F+ DE+V+TGG  E +T  +V++N AM+S+EE+LH +I ++K ++ K     KA+EI + K EA +AG P
Sbjct:  316 QQHTYVDTDTVRYLYQPLENMYLVLVTNRASNILEDLDTLRLCGKVVTDVVQTSMHHLPLECADEEAVRRAAYDLIFSFDEIVSTGGFKETVTEGQVKQNTAMDSNEEKLHRMIIQNKINETKDVMRNKAQEIDKRKMEA-KAGRP 460          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100651.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0YZ46_9CRYP1.420e-3250.67Coatomer subunit delta (Fragment) n=1 Tax=Hemiselm... [more]
A0A7S0XFC2_9STRA1.470e-3250.00Coatomer subunit delta (Fragment) n=1 Tax=Chromuli... [more]
A0A383VBM7_TETOB1.470e-3151.06Coatomer subunit delta n=1 Tax=Tetradesmus obliquu... [more]
A0A813B9C5_9DINO7.460e-3147.17Coatomer subunit delta (Fragment) n=1 Tax=Symbiodi... [more]
M2W722_GALSU3.420e-3053.38Coatomer subunit delta n=1 Tax=Galdieria sulphurar... [more]
A0A6J1X4V9_GALME2.920e-2946.15Coatomer subunit delta n=2 Tax=Ditrysia TaxID=3756... [more]
UPI000B3A70825.550e-2947.55coatomer subunit delta n=1 Tax=Helicoverpa armiger... [more]
A0A2P6TGH6_CHLSO6.920e-2950.00Coatomer subunit delta n=2 Tax=Chlorella sorokinia... [more]
A0A7S2S5S1_9STRA1.640e-2851.18Coatomer subunit delta n=1 Tax=labyrinthulid quaho... [more]
A0A059LMC7_9CHLO1.650e-2845.89Coatomer subunit delta (Fragment) n=1 Tax=Helicosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100651contigM-pyrifera_M_contig100651:70..678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog130081.XP_005708131.1
KEGG koko:K20471
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005829,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0097708
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG2635@1,KOG2635@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size609
Cds size609
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.6273515-CDS-M-pyrifera_M_contig100651:69..6781622815503.6273515-CDS-M-pyrifera_M_contig100651:69..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100651 70..678 -
1692277440.9462297-CDS-M-pyrifera_M_contig100651:69..6781692277440.9462297-CDS-M-pyrifera_M_contig100651:69..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100651 70..678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100651.148.1prot_M-pyrifera_M_contig100651.148.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100651 70..678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100651.148.1

>prot_M-pyrifera_M_contig100651.148.1 ID=prot_M-pyrifera_M_contig100651.148.1|Name=mRNA_M-pyrifera_M_contig100651.148.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=203bp
RQHTYVETESVRYLFHPLDSLYVVVITTRGSNIVEDLATLSLCAKTVSEF
GSEGAVLDEGAVRRNALELVFALDELVTTGGLSEHLTLAEVRKNMAMESH
EERLHDLIRESKEHDAKTTAARKAKEIGREKSEAARAGLPARSGVYSGVG
SDDYRPRGSGGSGGFGGSGGGGSVEGGRASGGGGGMGSGGSGRFGGSSSG
RSS
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mRNA from alignment at M-pyrifera_M_contig100651:70..678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100651.148.1 ID=mRNA_M-pyrifera_M_contig100651.148.1|Name=mRNA_M-pyrifera_M_contig100651.148.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=609bp|location=Sequence derived from alignment at M-pyrifera_M_contig100651:70..678- (Macrocystis pyrifera P11B4 male)
CGACAACACACGTATGTAGAGACTGAGTCGGTGCGTTATCTTTTCCATCC TTTGGATAGCTTGTATGTCGTGGTGATAACAACAAGAGGGTCCAACATTG TAGAGGATTTGGCTACGTTGAGTTTGTGTGCAAAGACAGTGAGTGAATTT GGTTCAGAAGGTGCAGTGTTGGACGAAGGAGCTGTTCGTCGCAATGCTTT GGAGCTGGTGTTTGCATTGGATGAATTAGTGACCACGGGGGGGTTGTCTG AACACCTTACCTTGGCAGAGGTGCGAAAGAACATGGCAATGGAATCTCAC GAAGAGAGATTGCATGATTTAATTCGCGAATCGAAAGAACATGATGCCAA AACGACAGCAGCGAGAAAAGCGAAGGAAATTGGGCGTGAAAAGTCTGAAG CTGCACGGGCAGGGCTCCCAGCTCGATCAGGCGTGTACTCTGGAGTGGGG AGTGATGATTATCGGCCAAGAGGAAGTGGAGGAAGCGGTGGATTTGGAGG AAGTGGAGGTGGAGGAAGTGTGGAGGGTGGTAGAGCAAGTGGTGGTGGAG GAGGTATGGGAAGTGGAGGAAGTGGTAGATTTGGAGGAAGTAGCAGTGGG AGAAGTAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100651:70..678-

>mRNA_M-pyrifera_M_contig100651.148.1 ID=mRNA_M-pyrifera_M_contig100651.148.1|Name=mRNA_M-pyrifera_M_contig100651.148.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1218bp|location=Sequence derived from alignment at M-pyrifera_M_contig100651:70..678- (Macrocystis pyrifera P11B4 male)
CGACAACACACGTATGTAGAGACTGAGTCGGTGCGTTATCTTTTCCATCC
TTTGGATAGCTTGTATGTCGTGGTGATAACAACAAGAGGGTCCAACATTG
TAGAGGATTTGGCTACGTTGAGTTTGTGTGCAAAGACAGTGAGTGAATTT
GGTTCAGAAGGTGCAGTGTTGGACGAAGGAGCTGTTCGTCGCAATGCTTT
GGAGCTGGTGTTTGCATTGGATGAATTAGTGACCACGGGGGGGTTGTCTG
AACACCTTACCTTGGCAGAGGTGCGAAAGAACATGGCAATGGAATCTCAC
GAAGAGAGATTGCATGATTTAATTCGCGAATCGAAAGAACATGATGCCAA
AACGACAGCAGCGAGAAAAGCGAAGGAAATTGGGCGTGAAAAGTCTGAAG
CTGCACGGGCAGGGCTCCCAGCTCGATCAGGCGTGTACTCTGGAGTGGGG
AGTGATGATTATCGGCCAAGAGGAAGTGGAGGAAGCGGTGGATTTGGAGG
AAGTGGAGGTGGAGGAAGTGTGGAGGGTGGTAGAGCAAGTGGTGGTGGAG
GAGGTATGGGAAGTGGAGGAAGTGGTAGATTTGGAGGAAGTAGCAGTGGG
AGAAGTAGTCGACAACACACGTATGTAGAGACTGAGTCGGTGCGTTATCT
TTTCCATCCTTTGGATAGCTTGTATGTCGTGGTGATAACAACAAGAGGGT
CCAACATTGTAGAGGATTTGGCTACGTTGAGTTTGTGTGCAAAGACAGTG
AGTGAATTTGGTTCAGAAGGTGCAGTGTTGGACGAAGGAGCTGTTCGTCG
CAATGCTTTGGAGCTGGTGTTTGCATTGGATGAATTAGTGACCACGGGGG
GGTTGTCTGAACACCTTACCTTGGCAGAGGTGCGAAAGAACATGGCAATG
GAATCTCACGAAGAGAGATTGCATGATTTAATTCGCGAATCGAAAGAACA
TGATGCCAAAACGACAGCAGCGAGAAAAGCGAAGGAAATTGGGCGTGAAA
AGTCTGAAGCTGCACGGGCAGGGCTCCCAGCTCGATCAGGCGTGTACTCT
GGAGTGGGGAGTGATGATTATCGGCCAAGAGGAAGTGGAGGAAGCGGTGG
ATTTGGAGGAAGTGGAGGTGGAGGAAGTGTGGAGGGTGGTAGAGCAAGTG
GTGGTGGAGGAGGTATGGGAAGTGGAGGAAGTGGTAGATTTGGAGGAAGT
AGCAGTGGGAGAAGTAGT
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