mRNA_M-pyrifera_M_contig106913.1480.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106913.1480.1
Unique NamemRNA_M-pyrifera_M_contig106913.1480.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106913.1480.1 vs. uniprot
Match: UPI000719C2EE (dipeptidase 1-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C2EE)

HSP 1 Score: 144 bits (363), Expect = 7.630e-40
Identity = 71/133 (53.38%), Postives = 94/133 (70.68%), Query Frame = 1
Query:    4 VGVAHAPLIFSLSNAFPLCPDPRYVPDTVLSQLEENGGVVMVNFYPPFVSCQEEASIAQVADHIDYIRSICGSGCVGIGADYDGVSNLATGLDSVASYPKLFQELYERGYTPEELANVMGLNVLRALAQAETV 402
            +  + AP+IFS S+A+ LC   R VPD +L+Q+ EN G+VMVNF P FVSCQ  AS++QVADHI+YI  + G+  VGIGADYDG+ ++ TGL+ V+ YP LF EL +RG+T EEL  + G N+LR     E V
Sbjct:  119 LATSSAPVIFSHSSAYALCDTTRNVPDDILTQMTENDGIVMVNFNPGFVSCQRVASLSQVADHIEYIVKVAGADHVGIGADYDGIVDVPTGLEDVSKYPDLFTELAKRGWTDEELGKLAGNNLLRVFETVEQV 251          
BLAST of mRNA_M-pyrifera_M_contig106913.1480.1 vs. uniprot
Match: UPI000C057547 (dipeptidase 1-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C057547)

HSP 1 Score: 145 bits (367), Expect = 1.640e-39
Identity = 69/137 (50.36%), Postives = 100/137 (72.99%), Query Frame = 1
Query:    1 VVGVAHAPLIFSLSNAFPLCPDPRYVPDTVLSQLEENGGVVMVNFYPPFVSCQEEASIAQVADHIDYIRSICGSGCVGIGADYDGVSNLATGLDSVASYPKLFQELYERGYTPEELANVMGLNVLRALAQAETVARS 411
            V+ +  AP+IFS S+A+ LC + R VPD VL +L +NGGVVMVNFY  +V+C+++A++  VADHIDYI+ + G   VG+G DYDGV  + TGL+ V++YPKL +EL  RGY+ +E + V+G N+L A+ + E VA +
Sbjct:  239 VLNITEAPVIFSHSSAYALCDNSRNVPDDVLKKLPKNGGVVMVNFYNDYVTCRKDATLGDVADHIDYIKKVAGIDHVGLGGDYDGVPRVPTGLEDVSTYPKLVEELLRRGYSNDEASKVVGGNLLTAMEKMEKVAEA 375          
BLAST of mRNA_M-pyrifera_M_contig106913.1480.1 vs. uniprot
Match: UPI000A2A800E (dipeptidase 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A800E)

HSP 1 Score: 143 bits (361), Expect = 1.320e-38
Identity = 67/136 (49.26%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    1 VVGVAHAPLIFSLSNAFPLCPDPRYVPDTVLSQLEENGGVVMVNFYPPFVSCQEEASIAQVADHIDYIRSICGSGCVGIGADYDGVSNLATGLDSVASYPKLFQELYERGYTPEELANVMGLNVLRALAQAETVAR 408
            V+ V+ AP+IFS S+A+ LC + R VPD VL ++ +NGGVVMVNFY  FV+C+  A++  VADH DYI+ + G   +G+G DYDGV  + TGL+ V+ YP L +EL  RGY+ E++  + GLN++RA+ + E VA+
Sbjct:  240 VLDVSTAPVIFSHSSAYALCNNSRNVPDDVLXRMPKNGGVVMVNFYNNFVTCKNNATLNDVADHFDYIKKVAGVDYIGLGGDYDGVPRVPTGLEDVSKYPALLEELLRRGYSDEDIKKIAGLNLIRAMKKMEQVAK 375          
BLAST of mRNA_M-pyrifera_M_contig106913.1480.1 vs. uniprot
Match: V9LIR7_CALMI (Dipeptidase (Fragment) n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9LIR7_CALMI)

HSP 1 Score: 135 bits (341), Expect = 4.400e-38
Identity = 65/136 (47.79%), Postives = 93/136 (68.38%), Query Frame = 1
Query:    1 VVGVAHAPLIFSLSNAFPLCPDPRYVPDTVLSQLEENGGVVMVNFYPPFVSCQEEASIAQVADHIDYIRSICGSGCVGIGADYDGVSNLATGLDSVASYPKLFQELYERGYTPEELANVMGLNVLRALAQAETVAR 408
            V+  + AP+IFS S+AF LC   R V D VL +L +N G+VMVNFYP FVSC++ AS++ VADH DYIR   G+  VGIG+D+DG+  + T L+ V+ YP L  EL +R +T  ++ N++GLN++R   + E V +
Sbjct:   17 VLKESEAPVIFSHSSAFHLCNSSRNVQDEVLDKLVDNKGIVMVNFYPYFVSCKDRASLSDVADHFDYIRKRIGADYVGIGSDFDGIERVPTALEDVSKYPNLISELLQRNWTDNDINNMLGLNLIRVFKKVEDVGK 152          
BLAST of mRNA_M-pyrifera_M_contig106913.1480.1 vs. uniprot
Match: A0A0S7L802_9TELE (Dipeptidase (Fragment) n=2 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7L802_9TELE)

HSP 1 Score: 139 bits (349), Expect = 1.390e-37
Identity = 62/134 (46.27%), Postives = 93/134 (69.40%), Query Frame = 1
Query:    1 VVGVAHAPLIFSLSNAFPLCPDPRYVPDTVLSQLEENGGVVMVNFYPPFVSCQEEASIAQVADHIDYIRSICGSGCVGIGADYDGVSNLATGLDSVASYPKLFQELYERGYTPEELANVMGLNVLRALAQAETV 402
            V+ ++ AP+IFS S+A+ +CP  R VPD VL+++ E GG+VMVNFY  +V+C + A ++ VADH D+I+ + G+G +G G DYDGV+ +  GL+ V+ YP L  EL  RG+T EE+   +G N+LR + + E V
Sbjct:  127 VLDISEAPVIFSHSSAYTVCPHKRNVPDDVLNRVNETGGIVMVNFYNDYVTCSQTARLSDVADHFDHIKKVAGAGIIGFGGDYDGVTRVPEGLEDVSKYPNLVAELLRRGWTDEEVKAALGNNLLRVMREVENV 260          
BLAST of mRNA_M-pyrifera_M_contig106913.1480.1 vs. uniprot
Match: UPI000D622F10 (dipeptidase 1 n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=UPI000D622F10)

HSP 1 Score: 135 bits (341), Expect = 1.500e-37
Identity = 62/134 (46.27%), Postives = 93/134 (69.40%), Query Frame = 1
Query:    1 VVGVAHAPLIFSLSNAFPLCPDPRYVPDTVLSQLEENGGVVMVNFYPPFVSCQEEASIAQVADHIDYIRSICGSGCVGIGADYDGVSNLATGLDSVASYPKLFQELYERGYTPEELANVMGLNVLRALAQAETV 402
            V+ ++ AP+IFS S+A+ +CP  R VPD +L +L E+ GV+MVNFY  +V+C + A+++ VADH D I+ + G+G +G G DYDGV+ L  GL+ V+  PKL  EL  RG+T  E+   +G+N+LR L +A+ V
Sbjct:   21 VLNISRAPVIFSHSSAYSICPHKRNVPDDILRKLNESHGVIMVNFYNDYVTCSKTANLSDVADHFDIIKKVAGAGVIGFGGDYDGVTRLPEGLEDVSKVPKLVAELLRRGWTDVEVKAALGMNLLRVLDEAQKV 154          
BLAST of mRNA_M-pyrifera_M_contig106913.1480.1 vs. uniprot
Match: UPI0018ECA2F4 (LOW QUALITY PROTEIN: dipeptidase 1 n=3 Tax=Micropterus TaxID=27705 RepID=UPI0018ECA2F4)

HSP 1 Score: 139 bits (350), Expect = 7.460e-37
Identity = 66/134 (49.25%), Postives = 91/134 (67.91%), Query Frame = 1
Query:    1 VVGVAHAPLIFSLSNAFPLCPDPRYVPDTVLSQLEENGGVVMVNFYPPFVSCQEEASIAQVADHIDYIRSICGSGCVGIGADYDGVSNLATGLDSVASYPKLFQELYERGYTPEELANVMGLNVLRALAQAETV 402
            V+ ++ AP+IFS S+A+ +CP  R VPD VL ++ E GG+VMVNFY  +V C + ASI+ VADH DYI+ + G G +G G DYDGV+ L  GL+ V+  PK+  EL  RG+T EE+   +G N+LR L + E V
Sbjct:  229 VLNMSKAPVIFSHSSAYGICPHKRNVPDEVLQRVNETGGIVMVNFYNDYVKCDKTASISDVADHFDYIKKVAGVGIIGFGGDYDGVNRLPEGLEDVSKVPKVVAELLRRGWTDEEVKAALGNNLLRVLEEVEGV 362          
BLAST of mRNA_M-pyrifera_M_contig106913.1480.1 vs. uniprot
Match: UPI001402EA46 (dipeptidase 1-like n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001402EA46)

HSP 1 Score: 139 bits (349), Expect = 9.940e-37
Identity = 67/131 (51.15%), Postives = 92/131 (70.23%), Query Frame = 1
Query:   10 VAHAPLIFSLSNAFPLCPDPRYVPDTVLSQLEENGGVVMVNFYPPFVSCQEEASIAQVADHIDYIRSICGSGCVGIGADYDGVSNLATGLDSVASYPKLFQELYERGYTPEELANVMGLNVLRALAQAETV 402
            V+ AP+IFS S+AF LC   R V D VL +L  N G+VMVNFYP F+SC+E A+++QVADH+D+IRS+ G+ CVGIG+D+DG      GL+ V+ YP L  EL  R +T  ++  ++GLN+LR   +AE V
Sbjct:  231 VSAAPVIFSHSSAFTLCNHTRNVQDHVLRKLANNSGIVMVNFYPKFISCEEIATLSQVADHLDHIRSVAGADCVGIGSDFDGFERGPVGLEDVSKYPDLIVELLWRNWTENDIKKLLGLNILRVFKKAEEV 361          
BLAST of mRNA_M-pyrifera_M_contig106913.1480.1 vs. uniprot
Match: G3PRZ9_GASAC (Dipeptidase n=2 Tax=Gasterosteidae TaxID=69291 RepID=G3PRZ9_GASAC)

HSP 1 Score: 139 bits (349), Expect = 1.050e-36
Identity = 65/134 (48.51%), Postives = 94/134 (70.15%), Query Frame = 1
Query:    1 VVGVAHAPLIFSLSNAFPLCPDPRYVPDTVLSQLEENGGVVMVNFYPPFVSCQEEASIAQVADHIDYIRSICGSGCVGIGADYDGVSNLATGLDSVASYPKLFQELYERGYTPEELANVMGLNVLRALAQAETV 402
            V+ ++ AP+IFS S+A+ +CP  R VPD VL ++ + GG+VMVNFY  +V+C + A I+ VADH D+I+ + G+G +G G DYDGV+ L  GL+ V+  PK+  EL  RG+T EE+   +G N+LR L+QAE V
Sbjct:  229 VLDMSQAPVIFSHSSAYSVCPHKRNVPDDVLLKVNQTGGIVMVNFYNDYVTCSKTAKISNVADHFDHIKKVAGAGIIGFGGDYDGVTRLPEGLEDVSKVPKVVAELLRRGWTDEEVNAALGNNLLRVLSQAEKV 362          
BLAST of mRNA_M-pyrifera_M_contig106913.1480.1 vs. uniprot
Match: A0A3M6TMJ7_POCDA (Dipeptidase n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TMJ7_POCDA)

HSP 1 Score: 138 bits (348), Expect = 1.350e-36
Identity = 67/144 (46.53%), Postives = 101/144 (70.14%), Query Frame = 1
Query:    1 VVGVAHAP-------LIFSLSNAFPLCPDPRYVPDTVLSQLEENGGVVMVNFYPPFVSCQEEASIAQVADHIDYIRSICGSGCVGIGADYDGVSNLATGLDSVASYPKLFQELYERGYTPEELANVMGLNVLRALAQAETVARS 411
            V+ +  AP       +IFS S+A+ LC +PR VPD VL +L  NGGVVMVNFY  +V+C+++A+++ VADHID+I+ + G   VG+G DYDGV  + TGL+ V++YPKL +EL  RGY+  E + ++G N++ A+ + E V++S
Sbjct:  238 VLNITEAPGIKENSHVIFSHSSAYALCKNPRNVPDDVLEKLPRNGGVVMVNFYNDYVTCRKDATLSDVADHIDHIKEVAGIDHVGLGGDYDGVPRVPTGLEDVSTYPKLVEELLRRGYSNAEASKIVGGNLITAMEKMEKVSKS 381          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106913.1480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000719C2EE7.630e-4053.38dipeptidase 1-like n=1 Tax=Priapulus caudatus TaxI... [more]
UPI000C0575471.640e-3950.36dipeptidase 1-like n=1 Tax=Stylophora pistillata T... [more]
UPI000A2A800E1.320e-3849.26dipeptidase 1 n=1 Tax=Exaiptasia diaphana TaxID=26... [more]
V9LIR7_CALMI4.400e-3847.79Dipeptidase (Fragment) n=1 Tax=Callorhinchus milii... [more]
A0A0S7L802_9TELE1.390e-3746.27Dipeptidase (Fragment) n=2 Tax=Poeciliinae TaxID=5... [more]
UPI000D622F101.500e-3746.27dipeptidase 1 n=1 Tax=Cynoglossus semilaevis TaxID... [more]
UPI0018ECA2F47.460e-3749.25LOW QUALITY PROTEIN: dipeptidase 1 n=3 Tax=Micropt... [more]
UPI001402EA469.940e-3751.15dipeptidase 1-like n=1 Tax=Amblyraja radiata TaxID... [more]
G3PRZ9_GASAC1.050e-3648.51Dipeptidase n=2 Tax=Gasterosteidae TaxID=69291 Rep... [more]
A0A3M6TMJ7_POCDA1.350e-3646.53Dipeptidase n=2 Tax=Pocillopora damicornis TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106913contigM-pyrifera_M_contig106913:2..412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score147.5
Seed ortholog evalue4.5e-33
Seed eggNOG ortholog45351.EDO35966
KEGG koko:K01273
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.dipeptidase activity
EggNOG OGs38D9H@33154,3BCAM@33208,COG2355@1,KOG4127@2759
EC3.4.13.19
COG Functional cat.O
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00537,ko01000,ko01002,ko04147
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.863811-CDS-M-pyrifera_M_contig106913:1..4121622815578.863811-CDS-M-pyrifera_M_contig106913:1..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106913 2..412 +
1692277472.4656003-CDS-M-pyrifera_M_contig106913:1..4121692277472.4656003-CDS-M-pyrifera_M_contig106913:1..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106913 2..412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106913.1480.1prot_M-pyrifera_M_contig106913.1480.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106913 2..412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106913.1480.1

>prot_M-pyrifera_M_contig106913.1480.1 ID=prot_M-pyrifera_M_contig106913.1480.1|Name=mRNA_M-pyrifera_M_contig106913.1480.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
VVGVAHAPLIFSLSNAFPLCPDPRYVPDTVLSQLEENGGVVMVNFYPPFV
SCQEEASIAQVADHIDYIRSICGSGCVGIGADYDGVSNLATGLDSVASYP
KLFQELYERGYTPEELANVMGLNVLRALAQAETVARS
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mRNA from alignment at M-pyrifera_M_contig106913:2..412+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106913.1480.1 ID=mRNA_M-pyrifera_M_contig106913.1480.1|Name=mRNA_M-pyrifera_M_contig106913.1480.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig106913:2..412+ (Macrocystis pyrifera P11B4 male)
GTCGTCGGCGTTGCGCATGCGCCTTTGATCTTCAGTCTCTCCAATGCGTT TCCACTCTGCCCCGACCCCCGCTATGTGCCTGATACTGTTTTGAGCCAAT TGGAGGAGAACGGTGGCGTTGTTATGGTCAATTTCTACCCTCCCTTCGTC AGTTGCCAAGAGGAGGCCTCCATTGCACAGGTGGCAGACCACATCGATTA CATTCGTTCCATCTGCGGCTCAGGCTGCGTGGGCATTGGAGCCGACTACG ACGGCGTTTCCAACCTGGCCACTGGCCTCGACAGTGTTGCAAGCTACCCC AAGCTCTTCCAGGAGCTGTACGAACGGGGGTACACCCCCGAGGAGCTTGC CAACGTCATGGGCCTCAATGTGCTCAGGGCCCTCGCACAAGCAGAGACTG TTGCTAGATCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106913:2..412+

>mRNA_M-pyrifera_M_contig106913.1480.1 ID=mRNA_M-pyrifera_M_contig106913.1480.1|Name=mRNA_M-pyrifera_M_contig106913.1480.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig106913:2..412+ (Macrocystis pyrifera P11B4 male)
GTCGTCGGCGTTGCGCATGCGCCTTTGATCTTCAGTCTCTCCAATGCGTT
TCCACTCTGCCCCGACCCCCGCTATGTGCCTGATACTGTTTTGAGCCAAT
TGGAGGAGAACGGTGGCGTTGTTATGGTCAATTTCTACCCTCCCTTCGTC
AGTTGCCAAGAGGAGGCCTCCATTGCACAGGTGGCAGACCACATCGATTA
CATTCGTTCCATCTGCGGCTCAGGCTGCGTGGGCATTGGAGCCGACTACG
ACGGCGTTTCCAACCTGGCCACTGGCCTCGACAGTGTTGCAAGCTACCCC
AAGCTCTTCCAGGAGCTGTACGAACGGGGGTACACCCCCGAGGAGCTTGC
CAACGTCATGGGCCTCAATGTGCTCAGGGCCCTCGCACAAGCAGAGACTG
TTGCTAGATCGGTCGTCGGCGTTGCGCATGCGCCTTTGATCTTCAGTCTC
TCCAATGCGTTTCCACTCTGCCCCGACCCCCGCTATGTGCCTGATACTGT
TTTGAGCCAATTGGAGGAGAACGGTGGCGTTGTTATGGTCAATTTCTACC
CTCCCTTCGTCAGTTGCCAAGAGGAGGCCTCCATTGCACAGGTGGCAGAC
CACATCGATTACATTCGTTCCATCTGCGGCTCAGGCTGCGTGGGCATTGG
AGCCGACTACGACGGCGTTTCCAACCTGGCCACTGGCCTCGACAGTGTTG
CAAGCTACCCCAAGCTCTTCCAGGAGCTGTACGAACGGGGGTACACCCCC
GAGGAGCTTGCCAACGTCATGGGCCTCAATGTGCTCAGGGCCCTCGCACA
AGCAGAGACTGTTGCTAGATCG
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