mRNA_M-pyrifera_M_contig100629.142.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100629.142.1
Unique NamemRNA_M-pyrifera_M_contig100629.142.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100629.142.1 vs. uniprot
Match: A0A6P5YNW2_DURZI (NF-X1-type zinc finger protein NFXL2 isoform X1 n=2 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5YNW2_DURZI)

HSP 1 Score: 104 bits (260), Expect = 1.190e-23
Identity = 49/125 (39.20%), Postives = 67/125 (53.60%), Query Frame = 1 
Query:    1 SCPPCHRTCSSRSRP-CSHACAARNGRCHSGDCPPCSEQVKRKCHCGSMPILLDCASWTGAGEEERMLLLSCGNACHRPLPLCNHLCASPCHAGPCPKPEECHKRVTVTCSCRQIRMAVLCAEAQ 372
            SC  C+  C     P C H C          +CPPC   +KR CHC +M    +C  +    E++++ + SCG  CHR LP C HLC   CHAG CP P++C KRVTV C C+ ++   +C + Q
Sbjct:  617 SCEECNLPCQKERMPICPHPCXXXXXX---AECPPCKVLLKRSCHCSAMVHAFECIYYNNLSEKDQVAVRSCGGPCHRKLPNCTHLCPEICHAGRCPAPDKCCKRVTVRCKCQTLKKEWICQDVQ 738
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BLAST of mRNA_M-pyrifera_M_contig100629.142.1 vs. uniprot
Match: E0VZX8_PEDHC (Nuclear transcription factor, X-box binding protein, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VZX8_PEDHC)

HSP 1 Score: 102 bits (253), Expect = 1.040e-22
Identity = 44/109 (40.37%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:   46 CSHACAARNGRCHSGDCPPCSEQVKRKCHCGSMPILLDCASWTGAGEEERMLLLSCGNACHRPLPLCNHLCASPCHAGPCPKPEECHKRVTVTCSCRQIRMAVLCAEAQ 372
            CSH C      CHSG CPPC++ +K KCHCG + ++  C+      ++ +  LLSCGN C +  P C H C S CH G CP P+ C K+V  +C C +++  + C  A+
Sbjct:  653 CSHKCPKP---CHSGPCPPCTQNIKSKCHCGVLMLINKCSELNSVQDDVKDKLLSCGNKCPKNYP-CGHKCKSDCHVGDCPDPDSCRKKVKKSCKCGKVKKEITCDMAR 757
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BLAST of mRNA_M-pyrifera_M_contig100629.142.1 vs. uniprot
Match: UPI0014716AB5 (NF-X1-type zinc finger protein NFXL1 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI0014716AB5)

HSP 1 Score: 101 bits (251), Expect = 1.940e-22
Identity = 49/121 (40.50%), Postives = 73/121 (60.33%), Query Frame = 1 
Query:    4 CPPCHRTCSSRSRP-CSHACAARNGRCHSGDCPPCSEQVKRKCHCGSMPILLDCASWTGAGEEERMLLLSCGNACHRPLPLCNHLCASPCHAGPCPKPEECHKRVTVTCSCRQIRMAVLCA 363
            C  C   CS    P C HACA     CH GDCPPCS+ ++++CHC    + ++C ++T A E++++ L+SC N C + L  C H C   CH GPC   ++C ++V V C C++I+  VLC+
Sbjct:  665 CDVCEEGCSKPRPPGCPHACACP---CHPGDCPPCSQMIRQRCHCKITTLYVECLTFTSADEQKKVELISCHNQCPKELS-CGHRCKRTCHPGPCE--DKCLQKVKVRCPCKRIKKEVLCS 779
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BLAST of mRNA_M-pyrifera_M_contig100629.142.1 vs. uniprot
Match: UPI000874EB3F (NF-X1-type zinc finger protein NFXL1 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000874EB3F)

HSP 1 Score: 99.8 bits (247), Expect = 6.700e-22
Identity = 51/121 (42.15%), Postives = 65/121 (53.72%), Query Frame = 1 
Query:    4 CPPCHRTCSSRSRP--CSHACAARNGRCHSGDCPPCSEQVKRKCHCGSMPILLDCASWTGAGEEERMLLLSCGNACHRPLPLCNHLCASPCHAGPCPKPEECHKRVTVTCSCRQIRMAVLC 360
            C  C   C+ + RP  C H+C      CH G CPPC   ++ KCHCG     + C+ W    + E   L SCGN C +    C H C + CHAGPCP PE+C K+V VTC CR+I+    C
Sbjct:  642 CEQCENDCT-KERPEGCQHSCPKP---CHPGPCPPCKNMLRVKCHCGLNQPYIRCSDWIDPKKREE--LQSCGNQCPKNFD-CGHRCKAICHAGPCPNPEQCKKKVKVTCKCRRIKKEFSC 755
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BLAST of mRNA_M-pyrifera_M_contig100629.142.1 vs. uniprot
Match: UPI001864AFC6 (NF-X1-type zinc finger protein NFXL1 n=3 Tax=Serrasalmidae TaxID=42495 RepID=UPI001864AFC6)

HSP 1 Score: 99.8 bits (247), Expect = 6.730e-22
Identity = 52/124 (41.94%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:    4 CPPCHRTCSSRSRP-CSHACAARNGRCHSGDCPPCSEQVKRKCHCGSMPILLDCASWTGAGEEERMLLLSCGNACHRPLPLCNHLCASPCHAGPCPKPEECHKRVTVTCSCRQIRMAVLCAEAQ 372
            C  C  TCS    P C H CA     CH GDCPPC++ ++++CHC    + ++C   T A EE   LL SC N C + L  C H C   CHAG C   E C +RV V C C++I+    C+ AQ
Sbjct:  689 CEQCEETCSKPRPPGCPHPCALP---CHRGDCPPCTQMIRQRCHCKITNLYIECLKLTSADEEAENLLTSCKNQCPKQLK-CGHRCKELCHAGDCV--ENCSQRVKVKCPCKRIKKEFACSRAQ 806
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BLAST of mRNA_M-pyrifera_M_contig100629.142.1 vs. uniprot
Match: A0A087T1Y0_STEMI (NF-X1-type zinc finger protein NFXL1 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087T1Y0_STEMI)

HSP 1 Score: 97.8 bits (242), Expect = 1.020e-21
Identity = 46/121 (38.02%), Postives = 67/121 (55.37%), Query Frame = 1 
Query:    4 CPPCHRTCSSRSRP--CSHACAARNGRCHSGDCPPCSEQVKRKCHCGSMPILLDCASWTGAGEEERMLLLSCGNACHRPLPLCNHLCASPCHAGPCPKPEECHKRVTVTCSCRQIRMAVLC 360
            C  C+  C  + RP  C+H C  R   CH GDC PCS+ +K KCHC    I + C+ W  A + ++  L+SC N C + +  C H C  PCH GPC   + C K++ + CSC++ +  + C
Sbjct:  198 CITCNEVCQ-KPRPSGCNHPCIRR---CHPGDCNPCSQHIKMKCHCEINTIYVACSEWVDADDAKKNALMSCSNRCCKKMS-CGHRCIFPCHPGPCADRDNCKKKIILRCSCKRKKKEIRC 313
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BLAST of mRNA_M-pyrifera_M_contig100629.142.1 vs. uniprot
Match: UPI001886104A (NF-X1-type zinc finger protein NFXL1 n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI001886104A)

HSP 1 Score: 99.0 bits (245), Expect = 1.250e-21
Identity = 52/122 (42.62%), Postives = 70/122 (57.38%), Query Frame = 1 
Query:    4 CPPCHRTCSSRSRP--CSHACAARNGRCHSGDCPPCSEQVKRKCHCGSMPILLDCASWTGAGEEERMLLLSCGNACHRPLPLCNHLCASPCHAGPCPKPEECHKRVTVTCSCRQIRMAVLCA 363
            C  C + CS + RP  C HAC      CHSGDCPPC + ++++CHC    I ++C   T A EE ++ L SC N C + L  C H C   CH GPC    ECH++V + C CR+I+  + CA
Sbjct:  654 CDDCEQGCS-KPRPHLCPHACPLP---CHSGDCPPCHQMIRQRCHCKMSAIYVECKKMTMADEETKIALGSCKNQCPKELS-CGHRCKQVCHPGPCG--VECHQKVKLRCPCRRIKKELACA 768
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BLAST of mRNA_M-pyrifera_M_contig100629.142.1 vs. uniprot
Match: UPI00094EC843 (NF-X1-type zinc finger protein NFXL1 n=1 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094EC843)

HSP 1 Score: 98.6 bits (244), Expect = 1.530e-21
Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = 1 
Query:    4 CPPCHRTCSSRSRP--CSHACAARNGRCHSGDCPPCSEQVKRKCHCGSMPILLDCASWTGAGEEERMLLLSCGNACHRPLPLCNHLCASPCHAGPCPKPEECHKRVTVTCSCRQIRMAVLCA 363
            C  C   CS + RP  C HAC      CHSGDCPPC + ++++CHC    I +DC   T A EE ++ L+SC N C + L  C H C   CH G C    ECH++V + C CR+I+  + CA
Sbjct:  340 CDDCEEGCS-KPRPLLCPHACPLP---CHSGDCPPCHQMIRQRCHCKMSAIYVDCMKMTMADEETKIALVSCTNQCPKELS-CGHRCKQVCHPGACGL--ECHQKVKLRCPCRRIKKELACA 454
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BLAST of mRNA_M-pyrifera_M_contig100629.142.1 vs. uniprot
Match: A0A3Q2Y5T7_HIPCM (Nuclear transcription factor, X-box binding like 1 n=2 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2Y5T7_HIPCM)

HSP 1 Score: 98.6 bits (244), Expect = 1.660e-21
Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = 1 
Query:    4 CPPCHRTCSSRSRP--CSHACAARNGRCHSGDCPPCSEQVKRKCHCGSMPILLDCASWTGAGEEERMLLLSCGNACHRPLPLCNHLCASPCHAGPCPKPEECHKRVTVTCSCRQIRMAVLCA 363
            C  C   CS + RP  C HAC      CHSGDCPPC + ++++CHC    I +DC   T A EE ++ L+SC N C + L  C H C   CH G C    ECH++V + C CR+I+  + CA
Sbjct:  453 CDDCEEGCS-KPRPLLCPHACPLP---CHSGDCPPCHQMIRQRCHCKMSAIYVDCMKMTMADEETKIALVSCTNQCPKELS-CGHRCKQVCHPGACGL--ECHQKVKLRCPCRRIKKELACA 567
[Close]
BLAST of mRNA_M-pyrifera_M_contig100629.142.1 vs. uniprot
Match: A0A2D0SH18_ICTPU (NF-X1-type zinc finger protein NFXL1 n=3 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0SH18_ICTPU)

HSP 1 Score: 98.6 bits (244), Expect = 1.700e-21
Identity = 51/125 (40.80%), Postives = 71/125 (56.80%), Query Frame = 1 
Query:    4 CPPCHRTCSSRSRP--CSHACAARNGRCHSGDCPPCSEQVKRKCHCGSMPILLDCASWTGAGEEERMLLLSCGNACHRPLPLCNHLCASPCHAGPCPKPEECHKRVTVTCSCRQIRMAVLCAEAQ 372
            C  C   CS + RP  C H CA     CH GDCPPC++ ++++CHC    + ++C   T A +E+R LL SC N C + L  C H C   CHAG C   E C++RV V C C++I+    C+ A+
Sbjct:  651 CEQCEEGCS-KPRPTGCPHLCALP---CHHGDCPPCTQMIRQRCHCKMSNLYIECLKLTSADDEDRKLLTSCKNQCPKQLK-CGHRCKELCHAGECE--ENCNQRVKVKCPCKRIKKEFSCSHAR 768
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100629.142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P5YNW2_DURZI1.190e-2339.20NF-X1-type zinc finger protein NFXL2 isoform X1 n=... [more]
E0VZX8_PEDHC1.040e-2240.37Nuclear transcription factor, X-box binding protei... [more]
UPI0014716AB51.940e-2240.50NF-X1-type zinc finger protein NFXL1 n=1 Tax=Thala... [more]
UPI000874EB3F6.700e-2242.15NF-X1-type zinc finger protein NFXL1 n=1 Tax=Anopl... [more]
UPI001864AFC66.730e-2241.94NF-X1-type zinc finger protein NFXL1 n=3 Tax=Serra... [more]
A0A087T1Y0_STEMI1.020e-2138.02NF-X1-type zinc finger protein NFXL1 (Fragment) n=... [more]
UPI001886104A1.250e-2142.62NF-X1-type zinc finger protein NFXL1 n=1 Tax=Syngn... [more]
UPI00094EC8431.530e-2142.62NF-X1-type zinc finger protein NFXL1 n=1 Tax=Hippo... [more]
A0A3Q2Y5T7_HIPCM1.660e-2142.62Nuclear transcription factor, X-box binding like 1... [more]
A0A2D0SH18_ICTPU1.700e-2140.80NF-X1-type zinc finger protein NFXL1 n=3 Tax=Silur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100629contigM-pyrifera_M_contig100629:20..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score124.0
Seed ortholog evalue4.8e-26
Seed eggNOG ortholog29760.VIT_13s0067g00920.t01
KEGG koko:K15683
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010310,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051193,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000377,GO:2001141
EggNOG free text desc.NF-X1-type zinc finger protein
EggNOG OGs37RCZ@33090,3G929@35493,KOG1952@1,KOG1952@2759
COG Functional cat.K
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons3
Model size372
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100629.142.1prot_M-pyrifera_M_contig100629.142.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100629 20..519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.3649883-CDS-M-pyrifera_M_contig100629:19..2101622815503.3649883-CDS-M-pyrifera_M_contig100629:19..210Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100629 20..210 -
1692277440.8324258-CDS-M-pyrifera_M_contig100629:19..2101692277440.8324258-CDS-M-pyrifera_M_contig100629:19..210Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100629 20..210 -
1622815503.3801713-CDS-M-pyrifera_M_contig100629:273..3661622815503.3801713-CDS-M-pyrifera_M_contig100629:273..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100629 274..366 -
1692277440.8483777-CDS-M-pyrifera_M_contig100629:273..3661692277440.8483777-CDS-M-pyrifera_M_contig100629:273..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100629 274..366 -
1622815503.390224-CDS-M-pyrifera_M_contig100629:431..5191622815503.390224-CDS-M-pyrifera_M_contig100629:431..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100629 432..519 -
1692277440.8588083-CDS-M-pyrifera_M_contig100629:431..5191692277440.8588083-CDS-M-pyrifera_M_contig100629:431..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100629 432..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100629.142.1

>prot_M-pyrifera_M_contig100629.142.1 ID=prot_M-pyrifera_M_contig100629.142.1|Name=mRNA_M-pyrifera_M_contig100629.142.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
SCPPCHRTCSSRSRPCSHACAARNGRCHSGDCPPCSEQVKRKCHCGSMPI
LLDCASWTGAGEEERMLLLSCGNACHRPLPLCNHLCASPCHAGPCPKPEE
CHKRVTVTCSCRQIRMAVLCAEAQ
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mRNA from alignment at M-pyrifera_M_contig100629:20..519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100629.142.1 ID=mRNA_M-pyrifera_M_contig100629.142.1|Name=mRNA_M-pyrifera_M_contig100629.142.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=500bp|location=Sequence derived from alignment at M-pyrifera_M_contig100629:20..519- (Macrocystis pyrifera P11B4 male)
TCGTGTCCACCATGCCATCGCACGTGTTCTTCGCGGTCTCGGCCGTGCTC
GCATGCATGTGCTGCCCGCAACGGCCGCTGCCACTCCGGTCCGTCACTGG
GGCGCGCGCTGCGCTCACTCACTGCGCATTCGTTGACACGCTGGCTTTTG
CAGGAGATTGCCCGCCTTGCTCTGAGCAGGTGAAGCGCAAGTGCCATTGC
GGCAGCATGCCGATCCTGCTCGACTGCGCCAGCTGGACTGGAGCCGGTGC
GAGTGTGATCGTCGCGCTCCTCGGGCCCTCCTCCTTACACACAAACTCTG
TCTGCACAGGCGAAGAGGAGAGGATGTTGCTGTTGTCATGCGGCAACGCG
TGCCACAGACCGCTGCCGTTGTGCAACCACCTGTGCGCTTCCCCGTGTCA
CGCCGGCCCATGCCCCAAGCCGGAGGAGTGCCACAAGCGGGTGACCGTGA
CGTGCTCGTGCCGCCAGATTCGAATGGCTGTCCTGTGTGCGGAGGCCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100629:20..519-

>mRNA_M-pyrifera_M_contig100629.142.1 ID=mRNA_M-pyrifera_M_contig100629.142.1|Name=mRNA_M-pyrifera_M_contig100629.142.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig100629:20..519- (Macrocystis pyrifera P11B4 male)
TCGTGTCCACCATGCCATCGCACGTGTTCTTCGCGGTCTCGGCCGTGCTC
GCATGCATGTGCTGCCCGCAACGGCCGCTGCCACTCCGTCGTGTCCACCA
TGCCATCGCACGTGTTCTTCGCGGTCTCGGCCGTGCTCGCATGCATGTGC
TGCCCGCAACGGCCGCTGCCACTCCGGAGATTGCCCGCCTTGCTCTGAGC
AGGTGAAGCGCAAGTGCCATTGCGGCAGCATGCCGATCCTGCTCGACTGC
GCCAGCTGGACTGGAGCCGGAGATTGCCCGCCTTGCTCTGAGCAGGTGAA
GCGCAAGTGCCATTGCGGCAGCATGCCGATCCTGCTCGACTGCGCCAGCT
GGACTGGAGCCGGCGAAGAGGAGAGGATGTTGCTGTTGTCATGCGGCAAC
GCGTGCCACAGACCGCTGCCGTTGTGCAACCACCTGTGCGCTTCCCCGTG
TCACGCCGGCCCATGCCCCAAGCCGGAGGAGTGCCACAAGCGGGTGACCG
TGACGTGCTCGTGCCGCCAGATTCGAATGGCTGTCCTGTGTGCGGAGGCC
CAGGCGAAGAGGAGAGGATGTTGCTGTTGTCATGCGGCAACGCGTGCCAC
AGACCGCTGCCGTTGTGCAACCACCTGTGCGCTTCCCCGTGTCACGCCGG
CCCATGCCCCAAGCCGGAGGAGTGCCACAAGCGGGTGACCGTGACGTGCT
CGTGCCGCCAGATTCGAATGGCTGTCCTGTGTGCGGAGGCCCAG
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