mRNA_M-pyrifera_M_contig1006.134.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1006.134.1
Unique NamemRNA_M-pyrifera_M_contig1006.134.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1006.134.1 vs. uniprot
Match: D7FM02_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM02_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 8.480e-74
Identity = 125/206 (60.68%), Postives = 149/206 (72.33%), Query Frame = 1 
Query:    4 ENTRWE---RKPQ--TMVLAPRKSVILRADDDDLPRDKDGNAQKKEEEP---LGEWHQILCCPCHNPTTLLYSTFCCCCALGDIGCYVHQKWICYPVYCLCASCPCWVGDARELVAEKFNLPVSEWEPDDCGWCLVKCIGVRLMCFASVCIFPCLHIAQMRAEVAFRKHGKATICPCXXXXXXXXXXXPGAPTAKDLELDYPREDG 597
            +N+ WE   R+P   T+VLAPR+  I+        RD++G  +  EE+P   LG WHQ   CPC NP  +LYS      A+GDIGCY+ + W+CYP YCL ASCPC VGD RELVAEK+NLP+  W+PD+ GWC VK IG RLMCF SVC+ PCLHI+QMRAEVAFRKHGKAT+CP XXXXXXXXXXX G  T K+ ELDYPR+DG
Sbjct:    7 DNSGWEPPSRRPSEGTIVLAPRRRSII--------RDEEGEGEGVEEKPDPPLGRWHQHSLCPCRNPNIMLYSLCXXXXAMGDIGCYLRENWMCYPAYCLGASCPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFVKMIGARLMCFCSVCLMPCLHISQMRAEVAFRKHGKATVCPXXXXXXXXXXXX-GETTYKEEELDYPRDDG 203
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1006.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM02_ECTSI8.480e-7460.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1006contigM-pyrifera_M_contig1006:19440..22401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000370.1
Exons3
Model size720
Cds size720
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1006.134.1prot_M-pyrifera_M_contig1006.134.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1006 19440..22401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.878029-CDS-M-pyrifera_M_contig1006:19439..199101622815502.878029-CDS-M-pyrifera_M_contig1006:19439..19910Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1006 19440..19910 -
1692277440.6718073-CDS-M-pyrifera_M_contig1006:19439..199101692277440.6718073-CDS-M-pyrifera_M_contig1006:19439..19910Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1006 19440..19910 -
1622815502.8900075-CDS-M-pyrifera_M_contig1006:21311..214071622815502.8900075-CDS-M-pyrifera_M_contig1006:21311..21407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1006 21312..21407 -
1692277440.6802132-CDS-M-pyrifera_M_contig1006:21311..214071692277440.6802132-CDS-M-pyrifera_M_contig1006:21311..21407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1006 21312..21407 -
1622815502.9003272-CDS-M-pyrifera_M_contig1006:22248..224011622815502.9003272-CDS-M-pyrifera_M_contig1006:22248..22401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1006 22249..22401 -
1692277440.6878433-CDS-M-pyrifera_M_contig1006:22248..224011692277440.6878433-CDS-M-pyrifera_M_contig1006:22248..22401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1006 22249..22401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1006.134.1

>prot_M-pyrifera_M_contig1006.134.1 ID=prot_M-pyrifera_M_contig1006.134.1|Name=mRNA_M-pyrifera_M_contig1006.134.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=240bp
MENTRWERKPQTMVLAPRKSVILRADDDDLPRDKDGNAQKKEEEPLGEWH
QILCCPCHNPTTLLYSTFCCCCALGDIGCYVHQKWICYPVYCLCASCPCW
VGDARELVAEKFNLPVSEWEPDDCGWCLVKCIGVRLMCFASVCIFPCLHI
AQMRAEVAFRKHGKATICPCCCCYCCGEGGSPGAPTAKDLELDYPREDGS
HPGAKSKENAQASADYPRGDESMFASTSKQDAKVEADYPR
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mRNA from alignment at M-pyrifera_M_contig1006:19440..22401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1006.134.1 ID=mRNA_M-pyrifera_M_contig1006.134.1|Name=mRNA_M-pyrifera_M_contig1006.134.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2962bp|location=Sequence derived from alignment at M-pyrifera_M_contig1006:19440..22401- (Macrocystis pyrifera P11B4 male)
ATGGAGAACACGCGGTGGGAGCGGAAGCCGCAGACCATGGTGTTGGCGCC
CAGAAAGAGCGTGATTTTAAGAGCAGATGATGATGATCTTCCTCGTGATA
AAGATGGGAATGCACAGAAGAAGGAAGAAGAACCTTTGGGAGAATGGCAT
CAGGTCAGGCGAGGCCACCAGGGGCTTGCAACGTGCACGGCTTGGTTTGG
CGTGAGCGTTTACGATTGGTACAGTACCACACAAGCACAAGTAGCGACTG
AAATTTGGCGCGCAGTCCATCCAACGTTCAAACTTAGAACGCTGAGTACA
ACAGCAAGTGGTATAACGACCCACATTCTGTCCGGAAATGTAAAGACCAC
TTGGCTATCAATATAAATGACCGACCGGTCGTTACATTTCAGACATGGTC
GTACGACAACAGGATTGCCCAAATAAATCGAAACAATTATTACTGTTGTA
TGTGGAAACTGATGAATAATACCGGGGTTTGCGATGGTGCCGACCACCTT
TACAGCGATCCCAAAGAGACAGGTGCCCAATGTTGAAGACTCCTTGCCAA
AAGGTATGATCGGCGCGTTCACGGTTGAGAGTAGTGATGGACACAAAAGG
GGAGTAGGAACAGCATCTCTGACTAACTTAGTAATTACGATCACGGACGA
TGTCGCACGTTGGTTGTACCTTCTCTTGCTCCCGATTCAATACTTTTGGA
AATTGTTCTCACACATAAGGGAAGGCTTTGGGAGGTAAGGCTACGAGGGC
TTCAGAGTTGCAGTCGGACCAGCCATCGATGTTGAGGGTTGGCGGAACAT
CACCCCCCCCCCGCCGTGAAATGTCGACGTCGTCGCTCTCGAGAGAGTTA
GTTTTCTTTGTTGCCTGGGTCGTACCTGGTGCATGCTCTGCTATACCTAC
CAGAGTACTGCTGCGCGAAGGGATATTTTTGGTTCCACAACATGTCAGTT
TTTTCCCCTTCATCATGCTTCATGTGTTCTGTCTCGTGTCACAGATTTTG
TGCTGCCCCTGCCACAACCCTACAACGCTCTTGTACAGCACCTTCTGCTG
CTGCTGCGCTCTAGGGGACATTGGCTGCTACGTCCACCAGGTGACGAGCT
TTACACAGACCGACTGCAACCAGCACTTGAGTCGGGAGAACCGCGCTTCA
ACGTGTGCCGTTATGTTGATGCTGTTGTTGTCGGGGTGGAATCCCAACAT
GCCAATTTGGCTCATGTCAATTTGGCTGTTGGATGTATGTTATATGTATT
TAAGACGTAGACGAGAGAACTACCAGGTATAGTACAAGCCAGGCACATAA
TGGTACATACTGCGTGCTTTTACGTTCTACAGTAGGTATGTGCGTACTGC
AGCCTGTTTTTGTGACCATGGGCTACAGAACAGTTCAGGGAAAGGATACT
ATTTATGGTGTAGAAACATCGTCATCATCACGTAGATCAAGGGAGGCCCA
CTTATTGCGTACGTGCGCGCACAGCCGCAGTTCGAACAGATAGTTCGAGC
CTCGTAATCTCGTGAAACATACCTGGTATTATACAGTACTGAGGTTGATT
ACGTGTGAGCTTTTGCATGCTACTGGTATGTTACTGTTCTTACATGAACT
AATCGCCAAACTTCTAGTCCATGTGGTCACAGGACAGGCTCCAAAAACTC
TGGAGTGGAAGAAGAGCTCAGGCCAAAAATAGGCAATACCATACTGGTGT
AAAACAATACCCATACATCATAAAGTACACCTCAAACAAGAAAACCACTT
GAAATGGGCACCAGATGCATATGCGCATTTTGCGAGAGTTTTGAGCCACC
TGGTCACTTATCTGTCAGAGCCTGCTCTTCAACGCGCGCAGGGCACCATC
AGTCTACGTAGCAGTACACGCTTCCACATGACACATGACACAAGAGTTCA
TGCCGTCGCGGGGTAGAGCCGCTCCATGCTCGACTTCCCTTTCTACAGCA
GTATGAACGTGAAATACCTTGCTCGTACAATATATGTATTATATGAATCT
ACCGTACCTCAAACGGATCGTAATTGTTGCAAGCAATATACTGGTTGTCC
GAAAGTTTGGTGGATTCACCGCCAAACGTTTGGAGCCGTTGGCACATCCG
ATTTATACCCAGTTCTCGGGATCCGGGGGCCTGTGGTCTCTCGTGTTCCA
CATGCCGTTACTTTCACATTCGTGATACCATCTTGCCGCGTACCCTCTCC
CTAATTCGCTGTGTACTTGATCTGCTCCGAAACTTTTCGGGCATGTCGGC
AAACCGACTTATTTGGACGTATCAGTATATCGGAACACAAAACATGCTCA
TCATGAACCGGAAGGCATTGCAACTACGAGAAGGCTTCCCCATGTGTCGT
CCCAGCAAAACCTATTAAGTACTGGATCGAAAACATGTATTCATCTTGGT
GCTCAGTCCCAACTCGCGTGCCTCTGATTTTGAGGCTCGTCGTATTCACA
CTCTGACGCGCGTGGCCCTCGTTGTCCCCTGCCCCCTGCAGAAATGGATA
TGTTATCCGGTCTACTGCCTCTGCGCATCTTGCCCGTGCTGGGTCGGCGA
CGCCCGCGAGTTGGTCGCGGAGAAGTTCAACCTTCCGGTATCTGAATGGG
AGCCGGACGACTGCGGCTGGTGCCTGGTGAAGTGCATCGGCGTGAGGCTC
ATGTGTTTCGCGAGCGTGTGCATATTCCCGTGCTTGCACATCGCGCAGAT
GAGGGCAGAGGTAGCCTTCAGAAAACACGGGAAGGCAACCATATGTCCGT
GCTGCTGCTGCTACTGCTGCGGAGAGGGGGGCAGTCCGGGAGCGCCAACA
GCCAAGGATCTAGAGCTGGACTACCCGCGTGAGGATGGATCGCACCCTGG
CGCAAAATCTAAGGAGAACGCTCAAGCTTCTGCAGACTACCCCCGGGGAG
ATGAATCAATGTTTGCCTCAACGTCCAAGCAGGACGCTAAGGTTGAGGCA
GACTACCCACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1006:19440..22401-

>mRNA_M-pyrifera_M_contig1006.134.1 ID=mRNA_M-pyrifera_M_contig1006.134.1|Name=mRNA_M-pyrifera_M_contig1006.134.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1440bp|location=Sequence derived from alignment at M-pyrifera_M_contig1006:19440..22401- (Macrocystis pyrifera P11B4 male)
ATGGAGAACACGCGGTGGGAGCGGAAGCCGCAGACCATGGTGTTGGCGCC
CAGAAAGAGCGTGATTTTAAGAGCAGATGATGATGATCTTCCTCGTGATA
AAGATGGGAATGCACAGAAGAAGGAAGAAGAACCTTTGGGAGAATGGCAT
CAGATGGAGAACACGCGGTGGGAGCGGAAGCCGCAGACCATGGTGTTGGC
GCCCAGAAAGAGCGTGATTTTAAGAGCAGATGATGATGATCTTCCTCGTG
ATAAAGATGGGAATGCACAGAAGAAGGAAGAAGAACCTTTGGGAGAATGG
CATCAGATTTTGTGCTGCCCCTGCCACAACCCTACAACGCTCTTGTACAG
CACCTTCTGCTGCTGCTGCGCTCTAGGGGACATTGGCTGCTACGTCCACC
AGATTTTGTGCTGCCCCTGCCACAACCCTACAACGCTCTTGTACAGCACC
TTCTGCTGCTGCTGCGCTCTAGGGGACATTGGCTGCTACGTCCACCAGAA
ATGGATATGTTATCCGGTCTACTGCCTCTGCGCATCTTGCCCGTGCTGGG
TCGGCGACGCCCGCGAGTTGGTCGCGGAGAAGTTCAACCTTCCGGTATCT
GAATGGGAGCCGGACGACTGCGGCTGGTGCCTGGTGAAGTGCATCGGCGT
GAGGCTCATGTGTTTCGCGAGCGTGTGCATATTCCCGTGCTTGCACATCG
CGCAGATGAGGGCAGAGGTAGCCTTCAGAAAACACGGGAAGGCAACCATA
TGTCCGTGCTGCTGCTGCTACTGCTGCGGAGAGGGGGGCAGTCCGGGAGC
GCCAACAGCCAAGGATCTAGAGCTGGACTACCCGCGTGAGGATGGATCGC
ACCCTGGCGCAAAATCTAAGGAGAACGCTCAAGCTTCTGCAGACTACCCC
CGGGGAGATGAATCAATGTTTGCCTCAACGTCCAAGCAGGACGCTAAGGT
TGAGGCAGACTACCCACGCAAATGGATATGTTATCCGGTCTACTGCCTCT
GCGCATCTTGCCCGTGCTGGGTCGGCGACGCCCGCGAGTTGGTCGCGGAG
AAGTTCAACCTTCCGGTATCTGAATGGGAGCCGGACGACTGCGGCTGGTG
CCTGGTGAAGTGCATCGGCGTGAGGCTCATGTGTTTCGCGAGCGTGTGCA
TATTCCCGTGCTTGCACATCGCGCAGATGAGGGCAGAGGTAGCCTTCAGA
AAACACGGGAAGGCAACCATATGTCCGTGCTGCTGCTGCTACTGCTGCGG
AGAGGGGGGCAGTCCGGGAGCGCCAACAGCCAAGGATCTAGAGCTGGACT
ACCCGCGTGAGGATGGATCGCACCCTGGCGCAAAATCTAAGGAGAACGCT
CAAGCTTCTGCAGACTACCCCCGGGGAGATGAATCAATGTTTGCCTCAAC
GTCCAAGCAGGACGCTAAGGTTGAGGCAGACTACCCACGC
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