mRNA_M-pyrifera_M_contig100574.132.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100574.132.1
Unique NamemRNA_M-pyrifera_M_contig100574.132.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100574.132.1 vs. uniprot
Match: A0A535T1N9_9CHLR (Amidase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535T1N9_9CHLR)

HSP 1 Score: 322 bits (825), Expect = 1.540e-108
Identity = 159/226 (70.35%), Postives = 186/226 (82.30%), Query Frame = 1
Query:    1 DGLDPRQYDVKTEAYTEALSGDISDLKIGIVEEGFGWAN-SEADVDASVRAAAEQFAALGATVASVSVPMHLDGQAIWTGIATEGATMLMVKGNSMGTNWKGHYTTSLLDAYARGRITRANDLSETTKMVFLLGQYLQDKYHGRFYAKAQNLSRALKAAYETALDEFDLLLMPTLPMKATPLPERDCPREEYVMRALEMLANTSPFDVTGHPAMNVPCGLSNGLPI 675
            DGLDPRQ DVK EAYT AL+ D   L+IGIV EGFGW   SE DVDA V A+A +F+ LGA V+++S+P+H DG  IW G+A EGATMLMV+GNSMGTNWKGHY+TSLLD+YARGRITRA+DLS+T K+V LLGQY+QD+YHGR+YAKAQNL+R L  AY+ AL   DLL+MPTLPMKAT +P  D PREE V RALEM+ANT PFDVTGHPAM +PCGLSN LP+
Sbjct:   14 DGLDPRQKDVKVEAYTRALANDTEGLRIGIVTEGFGWPGLSEQDVDALVEASARRFSELGAQVSTISIPLHRDGIHIWNGVAVEGATMLMVRGNSMGTNWKGHYSTSLLDSYARGRITRADDLSDTVKLVVLLGQYMQDRYHGRYYAKAQNLARTLTKAYDDALQSVDLLVMPTLPMKATRIPPVDAPREEKVARALEMIANTCPFDVTGHPAMTIPCGLSNDLPV 239          
BLAST of mRNA_M-pyrifera_M_contig100574.132.1 vs. uniprot
Match: A0A535PZW0_9CHLR (Amidase n=8 Tax=Chloroflexi TaxID=200795 RepID=A0A535PZW0_9CHLR)

HSP 1 Score: 321 bits (823), Expect = 5.420e-105
Identity = 159/226 (70.35%), Postives = 186/226 (82.30%), Query Frame = 1
Query:    1 DGLDPRQYDVKTEAYTEALSGDISDLKIGIVEEGFGWAN-SEADVDASVRAAAEQFAALGATVASVSVPMHLDGQAIWTGIATEGATMLMVKGNSMGTNWKGHYTTSLLDAYARGRITRANDLSETTKMVFLLGQYLQDKYHGRFYAKAQNLSRALKAAYETALDEFDLLLMPTLPMKATPLPERDCPREEYVMRALEMLANTSPFDVTGHPAMNVPCGLSNGLPI 675
            DGLDPRQ DVK EAYT AL+ D   L+IGIV EGFGW   SE DVDA V A+A +F+ LGA V+++S+P+H DG  IW GIA EGATM+MV+GNSMGTNWKGHY+TSLLD+YARGRITRA+DLS+T K+V LLGQY+QD+YHGR+YAKAQNL+R L  AY+ AL   DLL+MPTLPMKAT +P  D PREE V RALEM+ANT PFDVTGHPAM +PCGLSN LP+
Sbjct:  250 DGLDPRQKDVKVEAYTRALANDTEGLRIGIVTEGFGWPGLSEQDVDALVEASARRFSELGAQVSTISIPLHRDGIHIWNGIAVEGATMVMVRGNSMGTNWKGHYSTSLLDSYARGRITRADDLSDTVKLVVLLGQYMQDRYHGRYYAKAQNLARTLTKAYDDALQSVDLLVMPTLPMKATRIPPVDAPREEKVARALEMIANTCPFDVTGHPAMTIPCGLSNDLPV 475          
BLAST of mRNA_M-pyrifera_M_contig100574.132.1 vs. uniprot
Match: A0A536H771_9CHLR (Amidase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536H771_9CHLR)

HSP 1 Score: 318 bits (816), Expect = 6.150e-104
Identity = 157/226 (69.47%), Postives = 185/226 (81.86%), Query Frame = 1
Query:    1 DGLDPRQYDVKTEAYTEALSGDISDLKIGIVEEGFGWAN-SEADVDASVRAAAEQFAALGATVASVSVPMHLDGQAIWTGIATEGATMLMVKGNSMGTNWKGHYTTSLLDAYARGRITRANDLSETTKMVFLLGQYLQDKYHGRFYAKAQNLSRALKAAYETALDEFDLLLMPTLPMKATPLPERDCPREEYVMRALEMLANTSPFDVTGHPAMNVPCGLSNGLPI 675
            DGLDPRQ DVK EAYT+AL+ D   L+IGIV EGFGW   SE D DA V A+A++F  LGA V+ +S+P+H DG  IW GIA EGATMLMV+GNSMGTNWKGHY+TSLL+AYARGRITRA+DLS+T K+V LLGQY+QD+YHGR+YAKAQNL+R L  AY+ AL   DLL++PTLPMKAT +P  D  REE V RALEM+ANT PFDVTGHPAM +PCGLS+GLP+
Sbjct:  250 DGLDPRQKDVKVEAYTQALANDTQGLRIGIVAEGFGWPGLSEQDADALVEASAQRFTQLGAQVSKISIPLHRDGIHIWNGIAVEGATMLMVRGNSMGTNWKGHYSTSLLNAYARGRITRADDLSDTVKLVMLLGQYMQDRYHGRYYAKAQNLARTLTKAYDDALQSVDLLVLPTLPMKATRIPPADATREERVTRALEMIANTCPFDVTGHPAMTIPCGLSHGLPV 475          
BLAST of mRNA_M-pyrifera_M_contig100574.132.1 vs. uniprot
Match: A0A7V3BMZ1_9BACT (Amidase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3BMZ1_9BACT)

HSP 1 Score: 317 bits (811), Expect = 3.800e-103
Identity = 158/227 (69.60%), Postives = 184/227 (81.06%), Query Frame = 1
Query:    1 DGLDPRQYD-VKTEAYTEALSGDISDLKIGIVEEGFGWAN-SEADVDASVRAAAEQFAALGATVASVSVPMHLDGQAIWTGIATEGATMLMVKGNSMGTNWKGHYTTSLLDAYARGRITRANDLSETTKMVFLLGQYLQDKYHGRFYAKAQNLSRALKAAYETALDEFDLLLMPTLPMKATPLPERDCPREEYVMRALEMLANTSPFDVTGHPAMNVPCGLSNGLPI 675
            DGLDPRQ   V+TEAYT+AL+GD + L++GIV EGFGW   SEADVDA VR AA++   +GATV+ +S+P+H DG  IWTG+  EGATMLMV GN MGTNWKGHY T LLD YAR R TRANDLSET K+V LLGQY+QD YHGR+YAKAQNL+R L+AAY+ AL   DLL+MPT PMKAT +P  D  REEYV RALEM+ NTSPFDVTGHPAMNVPCG+S+GLP+
Sbjct:  267 DGLDPRQSAAVRTEAYTQALTGDATGLRVGIVREGFGWPGASEADVDAMVRDAAQRLTKVGATVSDISIPLHRDGVHIWTGVCIEGATMLMVNGNGMGTNWKGHYLTPLLDFYARSRRTRANDLSETVKLVVLLGQYMQDNYHGRYYAKAQNLARVLRAAYDEALRSVDLLIMPTTPMKATVIPPADASREEYVARALEMIPNTSPFDVTGHPAMNVPCGMSDGLPV 493          
BLAST of mRNA_M-pyrifera_M_contig100574.132.1 vs. uniprot
Match: A0A4R1BN38_9ACTN (Amidase n=1 Tax=Rubrobacter taiwanensis TaxID=185139 RepID=A0A4R1BN38_9ACTN)

HSP 1 Score: 311 bits (798), Expect = 2.820e-101
Identity = 156/226 (69.03%), Postives = 176/226 (77.88%), Query Frame = 1
Query:    1 DGLDPRQYDVKTEAYTEALSGDISDLKIGIVEEGFGWAN-SEADVDASVRAAAEQFAALGATVASVSVPMHLDGQAIWTGIATEGATMLMVKGNSMGTNWKGHYTTSLLDAYARGRITRANDLSETTKMVFLLGQYLQDKYHGRFYAKAQNLSRALKAAYETALDEFDLLLMPTLPMKATPLPERDCPREEYVMRALEMLANTSPFDVTGHPAMNVPCGLSNGLPI 675
            DGLDPRQ DV+   YT AL G    L++G+V EGFGW   SE DVD  VR A  +F  +GA V  VS+PMH DG  IW  IA EGAT LMV+GNSMGTNW GHYTTSLLDAYARGRITR  DLS+T K+V LLGQY+QD YHGR+YAKAQNL+R L AAY+ AL E DLL MPTLPMKATP+P  D PREE V RALEM+ NT+PFDV+GHPAMNVPCGLS+GLP+
Sbjct:  251 DGLDPRQRDVQVGDYTGALEGGAEGLRVGVVPEGFGWPGVSEEDVDRMVREAVRKFGEIGAKVGEVSIPMHRDGIHIWNAIAVEGATALMVRGNSMGTNWTGHYTTSLLDAYARGRITRGGDLSDTVKLVVLLGQYMQDAYHGRYYAKAQNLARRLTAAYDEALSEVDLLAMPTLPMKATPIPPPDAPREEVVARALEMIPNTAPFDVSGHPAMNVPCGLSDGLPV 476          
BLAST of mRNA_M-pyrifera_M_contig100574.132.1 vs. uniprot
Match: A0A2N5KJK1_9ACTN (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5KJK1_9ACTN)

HSP 1 Score: 306 bits (785), Expect = 2.870e-99
Identity = 154/226 (68.14%), Postives = 178/226 (78.76%), Query Frame = 1
Query:    1 DGLDPRQYDVKTEAYTEALSGDISDLKIGIVEEGFGWAN-SEADVDASVRAAAEQFAALGATVASVSVPMHLDGQAIWTGIATEGATMLMVKGNSMGTNWKGHYTTSLLDAYARGRITRANDLSETTKMVFLLGQYLQDKYHGRFYAKAQNLSRALKAAYETALDEFDLLLMPTLPMKATPLPERDCPREEYVMRALEMLANTSPFDVTGHPAMNVPCGLSNGLPI 675
            DGLDPRQ  V+T+ Y   L G +  ++IGI+ EGFGW   SE DVDASVR AA  F  LGA V  VSVP+H DG  IW GIA EGAT LMV GNSMGTNWKGHYT+SLLDAYARGRITRA+DLSET K+  L+G+Y+Q++YHGR+YAKAQNLSR L AAY+ AL E+DLLLMPT+PMKATP+P  D PREE V RALEM+ NT  FDVTG P+M VPCG S+GLP+
Sbjct:  250 DGLDPRQVRVRTDDYLSGLDGGVEGMRIGILSEGFGWPGLSEEDVDASVREAASTFRKLGAEVGEVSVPLHRDGIHIWNGIAIEGATALMVDGNSMGTNWKGHYTSSLLDAYARGRITRADDLSETVKLTMLVGRYMQERYHGRYYAKAQNLSRKLSAAYDAALAEYDLLLMPTVPMKATPIPAPDAPREEVVQRALEMIHNTCAFDVTGLPSMTVPCGTSDGLPV 475          
BLAST of mRNA_M-pyrifera_M_contig100574.132.1 vs. uniprot
Match: A0A1Z9U8X4_9GAMM (Amidase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9U8X4_9GAMM)

HSP 1 Score: 304 bits (779), Expect = 1.590e-98
Identity = 149/226 (65.93%), Postives = 180/226 (79.65%), Query Frame = 1
Query:    1 DGLDPRQYDVKTEAYTEALSGDISDLKIGIVEEGFGWANS-EADVDASVRAAAEQFAALGATVASVSVPMHLDGQAIWTGIATEGATMLMVKGNSMGTNWKGHYTTSLLDAYARGRITRANDLSETTKMVFLLGQYLQDKYHGRFYAKAQNLSRALKAAYETALDEFDLLLMPTLPMKATPLPERDCPREEYVMRALEMLANTSPFDVTGHPAMNVPCGLSNGLPI 675
            D +DPRQY+VKTE Y++AL+ DI+  KIGI++EGF W +S E DVD SV AA +Q   LGA V  +S+P HLDG  IW  IA EGA  LM+KGNSMGTNWKG+Y TSLLDA+ARGR+TRA+DLSETTK+V L G+Y+  KYHGR+YAKAQNL+  L  AY+TAL+ +DLL+MPT+PMKAT LP +DC REE + R LEM+ NT PFDVTGHPAM VPCG S+GLPI
Sbjct:  251 DKMDPRQYNVKTEKYSKALTNDINGXKIGIIKEGFNWKDSSEEDVDQSVIAAGKQLELLGAKVEQISIPFHLDGIHIWNAIAIEGANALMIKGNSMGTNWKGYYNTSLLDAFARGRLTRADDLSETTKLVMLTGEYMSTKYHGRYYAKAQNLAMKLSNAYDTALNSYDLLMMPTMPMKATKLPAKDCSREEIIARGLEMVNNTCPFDVTGHPAMTVPCGFSDGLPI 476          
BLAST of mRNA_M-pyrifera_M_contig100574.132.1 vs. uniprot
Match: A0A2V7AD73_9BACT (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7AD73_9BACT)

HSP 1 Score: 303 bits (776), Expect = 4.370e-98
Identity = 147/226 (65.04%), Postives = 179/226 (79.20%), Query Frame = 1
Query:    1 DGLDPRQYDVKTEAYTEALSGDISDLKIGIVEEGFGWAN-SEADVDASVRAAAEQFAALGATVASVSVPMHLDGQAIWTGIATEGATMLMVKGNSMGTNWKGHYTTSLLDAYARGRITRANDLSETTKMVFLLGQYLQDKYHGRFYAKAQNLSRALKAAYETALDEFDLLLMPTLPMKATPLPERDCPREEYVMRALEMLANTSPFDVTGHPAMNVPCGLSNGLPI 675
            DGLDPRQ DV+T+ YTEA+ G +  L++ IV EGFGW   SE DVD  V+ A  +   LGA V ++S+PMH DG  IW  IA EGATMLMV+GNSMGTNWKGHYTTSLLD +A+G  +RA+DLSETTK+V +LGQY+QD YHGR+YAKAQN++R+L+ AY+ AL + DLL+MPTLPMKATP+P     REEYV RALEM+ NT PFDVTGHPA+ VPCG+S GLP+
Sbjct:  251 DGLDPRQRDVRTDKYTEAIKGSVGGLRLAIVTEGFGWEGASEKDVDQMVQDAVHKLERLGAKVTTISLPMHRDGIHIWNAIAVEGATMLMVRGNSMGTNWKGHYTTSLLDVFAKGWQSRADDLSETTKLVVMLGQYMQDNYHGRYYAKAQNIARSLRGAYDEALQQADLLVMPTLPMKATPIPSPTASREEYVARALEMIPNTCPFDVTGHPALTVPCGMSGGLPV 476          
BLAST of mRNA_M-pyrifera_M_contig100574.132.1 vs. uniprot
Match: A0A2W5ZVX4_9BACT (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A n=1 Tax=Candidatus Dormibacteraeota bacterium TaxID=2052315 RepID=A0A2W5ZVX4_9BACT)

HSP 1 Score: 301 bits (772), Expect = 2.530e-97
Identity = 154/226 (68.14%), Postives = 176/226 (77.88%), Query Frame = 1
Query:    1 DGLDPRQYDVKTEAYTEALSGDISDLKIGIVEEGFGW-ANSEADVDASVRAAAEQFAALGATVASVSVPMHLDGQAIWTGIATEGATMLMVKGNSMGTNWKGHYTTSLLDAYARGRITRANDLSETTKMVFLLGQYLQDKYHGRFYAKAQNLSRALKAAYETALDEFDLLLMPTLPMKATPLPERDCPREEYVMRALEMLANTSPFDVTGHPAMNVPCGLSNGLPI 675
            DGLDPRQ  V+T+ Y EA    +  L+IGIV+EGFGW A SE DVD +V+ AA +    GA +  VSVPMHLDG  IW  IA EGATMLMV+GNSMGTNWKGHY+TSLLDAYARGR+TRA+DLS+T K+V L GQYLQD YHGR+YAK QNL R L AAY  AL + DLL MPT+PMKAT LP  D  REE V RALEM+ NTSPFDVTGHPAMNVPC +S+GLP+
Sbjct:  251 DGLDPRQRGVRTDRYVEAHQRALDGLRIGIVKEGFGWPALSEPDVDEAVKEAARRLEGAGAILREVSVPMHLDGIHIWNAIAVEGATMLMVRGNSMGTNWKGHYSTSLLDAYARGRLTRADDLSDTVKLVILAGQYLQDAYHGRYYAKGQNLGRTLTAAYGDALRDLDLLAMPTIPMKATRLPAPDATREEKVARALEMIPNTSPFDVTGHPAMNVPCAMSSGLPV 476          
BLAST of mRNA_M-pyrifera_M_contig100574.132.1 vs. uniprot
Match: A0A535E160_9CHLR (Amidase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535E160_9CHLR)

HSP 1 Score: 301 bits (771), Expect = 3.670e-97
Identity = 154/226 (68.14%), Postives = 176/226 (77.88%), Query Frame = 1
Query:    1 DGLDPRQYDVKTEAYTEALSGDISDLKIGIVEEGFGW-ANSEADVDASVRAAAEQFAALGATVASVSVPMHLDGQAIWTGIATEGATMLMVKGNSMGTNWKGHYTTSLLDAYARGRITRANDLSETTKMVFLLGQYLQDKYHGRFYAKAQNLSRALKAAYETALDEFDLLLMPTLPMKATPLPERDCPREEYVMRALEMLANTSPFDVTGHPAMNVPCGLSNGLPI 675
            DGLDPRQ DV+ + Y EAL    S L+IG+V EGFG    S+ DVD +VRAAA +FA  G +V  V VPMH DG AIW  IA EGA MLMV+GN MGTNWKG Y+TSLLDAYARGR+ RA+DLS+T K+V L GQYLQD YHGR+YAKAQNL+RAL AAY+ AL E DLLLMPT+PMKAT LP  D PREE V RALEM+ NT+PFDV+GHPAMNVPC  S GLP+
Sbjct:  251 DGLDPRQRDVRVDRYVEALDRGASGLRIGVVREGFGLEGTSQPDVDEAVRAAARRFADAGLSVRDVEVPMHRDGFAIWNAIAVEGAAMLMVRGNGMGTNWKGRYSTSLLDAYARGRLARADDLSDTVKLVVLAGQYLQDAYHGRYYAKAQNLARALTAAYDEALREVDLLLMPTIPMKATRLPAADAPREERVARALEMIPNTAPFDVSGHPAMNVPCARSEGLPV 476          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100574.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A535T1N9_9CHLR1.540e-10870.35Amidase (Fragment) n=1 Tax=Chloroflexi bacterium T... [more]
A0A535PZW0_9CHLR5.420e-10570.35Amidase n=8 Tax=Chloroflexi TaxID=200795 RepID=A0A... [more]
A0A536H771_9CHLR6.150e-10469.47Amidase n=1 Tax=Chloroflexi bacterium TaxID=202672... [more]
A0A7V3BMZ1_9BACT3.800e-10369.60Amidase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7... [more]
A0A4R1BN38_9ACTN2.820e-10169.03Amidase n=1 Tax=Rubrobacter taiwanensis TaxID=1851... [more]
A0A2N5KJK1_9ACTN2.870e-9968.14Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCA... [more]
A0A1Z9U8X4_9GAMM1.590e-9865.93Amidase n=3 Tax=Gammaproteobacteria TaxID=1236 Rep... [more]
A0A2V7AD73_9BACT4.370e-9865.04Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCA... [more]
A0A2W5ZVX4_9BACT2.530e-9768.14Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCA... [more]
A0A535E160_9CHLR3.670e-9768.14Amidase n=1 Tax=Chloroflexi bacterium TaxID=202672... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100574contigM-pyrifera_M_contig100574:3..677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score303.9
Seed ortholog evalue6.2e-80
Seed eggNOG ortholog42256.RradSPS_0954
Preferred nameamdA
KEGG rclassRC00010,RC00100,RC00950,RC01025
KEGG koko:K01426
KEGG ReactionR02540,R03096,R03180,R03909,R05551,R05590
KEGG Pathwayko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the amidase family
EggNOG OGs2GUUU@201174,4CR01@84995,COG0154@1,COG0154@2
EC3.5.1.4
COG Functional cat.J
Best tax levelRubrobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size675
Cds size675
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.7329903-CDS-M-pyrifera_M_contig100574:2..6771622815502.7329903-CDS-M-pyrifera_M_contig100574:2..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100574 3..677 -
1692277440.637592-CDS-M-pyrifera_M_contig100574:2..6771692277440.637592-CDS-M-pyrifera_M_contig100574:2..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100574 3..677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100574.132.1prot_M-pyrifera_M_contig100574.132.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100574 3..677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100574.132.1

>prot_M-pyrifera_M_contig100574.132.1 ID=prot_M-pyrifera_M_contig100574.132.1|Name=mRNA_M-pyrifera_M_contig100574.132.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=225bp
DGLDPRQYDVKTEAYTEALSGDISDLKIGIVEEGFGWANSEADVDASVRA
AAEQFAALGATVASVSVPMHLDGQAIWTGIATEGATMLMVKGNSMGTNWK
GHYTTSLLDAYARGRITRANDLSETTKMVFLLGQYLQDKYHGRFYAKAQN
LSRALKAAYETALDEFDLLLMPTLPMKATPLPERDCPREEYVMRALEMLA
NTSPFDVTGHPAMNVPCGLSNGLPI
back to top

mRNA from alignment at M-pyrifera_M_contig100574:3..677-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100574.132.1 ID=mRNA_M-pyrifera_M_contig100574.132.1|Name=mRNA_M-pyrifera_M_contig100574.132.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=675bp|location=Sequence derived from alignment at M-pyrifera_M_contig100574:3..677- (Macrocystis pyrifera P11B4 male)
GACGGCCTCGATCCGCGCCAGTACGACGTGAAAACCGAGGCGTATACCGA GGCGCTCAGCGGCGATATTTCGGATCTGAAGATCGGGATCGTCGAAGAGG GCTTTGGCTGGGCGAACTCGGAAGCGGATGTGGATGCGAGCGTGCGCGCG GCTGCCGAGCAGTTTGCCGCGCTCGGCGCGACGGTCGCTTCCGTGTCGGT GCCAATGCATCTCGACGGCCAGGCGATCTGGACCGGCATCGCGACGGAAG GGGCGACCATGCTCATGGTCAAGGGTAATTCCATGGGTACGAACTGGAAG GGCCACTACACGACGAGCCTGCTAGATGCCTACGCGCGCGGCCGTATCAC GCGCGCGAACGACCTGTCGGAAACGACGAAAATGGTTTTCCTGCTCGGGC AATACCTGCAGGACAAATACCACGGCCGTTTCTACGCGAAAGCACAGAAC CTGTCGCGTGCGCTCAAGGCCGCTTACGAGACCGCGCTCGACGAGTTCGA CCTGCTGCTGATGCCAACCCTGCCGATGAAAGCGACACCATTGCCGGAGC GTGACTGCCCGCGCGAGGAATACGTGATGCGGGCACTCGAAATGCTCGCG AACACGTCGCCGTTCGACGTGACCGGACATCCGGCCATGAACGTGCCGTG CGGATTGTCCAACGGCCTGCCCATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100574:3..677-

>mRNA_M-pyrifera_M_contig100574.132.1 ID=mRNA_M-pyrifera_M_contig100574.132.1|Name=mRNA_M-pyrifera_M_contig100574.132.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1350bp|location=Sequence derived from alignment at M-pyrifera_M_contig100574:3..677- (Macrocystis pyrifera P11B4 male)
GACGGCCTCGATCCGCGCCAGTACGACGTGAAAACCGAGGCGTATACCGA
GGCGCTCAGCGGCGATATTTCGGATCTGAAGATCGGGATCGTCGAAGAGG
GCTTTGGCTGGGCGAACTCGGAAGCGGATGTGGATGCGAGCGTGCGCGCG
GCTGCCGAGCAGTTTGCCGCGCTCGGCGCGACGGTCGCTTCCGTGTCGGT
GCCAATGCATCTCGACGGCCAGGCGATCTGGACCGGCATCGCGACGGAAG
GGGCGACCATGCTCATGGTCAAGGGTAATTCCATGGGTACGAACTGGAAG
GGCCACTACACGACGAGCCTGCTAGATGCCTACGCGCGCGGCCGTATCAC
GCGCGCGAACGACCTGTCGGAAACGACGAAAATGGTTTTCCTGCTCGGGC
AATACCTGCAGGACAAATACCACGGCCGTTTCTACGCGAAAGCACAGAAC
CTGTCGCGTGCGCTCAAGGCCGCTTACGAGACCGCGCTCGACGAGTTCGA
CCTGCTGCTGATGCCAACCCTGCCGATGAAAGCGACACCATTGCCGGAGC
GTGACTGCCCGCGCGAGGAATACGTGATGCGGGCACTCGAAATGCTCGCG
AACACGTCGCCGTTCGACGTGACCGGACATCCGGCCATGAACGTGCCGTG
CGGATTGTCCAACGGCCTGCCCATCGACGGCCTCGATCCGCGCCAGTACG
ACGTGAAAACCGAGGCGTATACCGAGGCGCTCAGCGGCGATATTTCGGAT
CTGAAGATCGGGATCGTCGAAGAGGGCTTTGGCTGGGCGAACTCGGAAGC
GGATGTGGATGCGAGCGTGCGCGCGGCTGCCGAGCAGTTTGCCGCGCTCG
GCGCGACGGTCGCTTCCGTGTCGGTGCCAATGCATCTCGACGGCCAGGCG
ATCTGGACCGGCATCGCGACGGAAGGGGCGACCATGCTCATGGTCAAGGG
TAATTCCATGGGTACGAACTGGAAGGGCCACTACACGACGAGCCTGCTAG
ATGCCTACGCGCGCGGCCGTATCACGCGCGCGAACGACCTGTCGGAAACG
ACGAAAATGGTTTTCCTGCTCGGGCAATACCTGCAGGACAAATACCACGG
CCGTTTCTACGCGAAAGCACAGAACCTGTCGCGTGCGCTCAAGGCCGCTT
ACGAGACCGCGCTCGACGAGTTCGACCTGCTGCTGATGCCAACCCTGCCG
ATGAAAGCGACACCATTGCCGGAGCGTGACTGCCCGCGCGAGGAATACGT
GATGCGGGCACTCGAAATGCTCGCGAACACGTCGCCGTTCGACGTGACCG
GACATCCGGCCATGAACGTGCCGTGCGGATTGTCCAACGGCCTGCCCATC
back to top