mRNA_M-pyrifera_M_contig100569.131.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100569.131.1
Unique NamemRNA_M-pyrifera_M_contig100569.131.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100569.131.1 vs. uniprot
Match: A0A1Q7BE41_9ARCH (F420_oxidored domain-containing protein n=8 Tax=Archaea TaxID=2157 RepID=A0A1Q7BE41_9ARCH)

HSP 1 Score: 68.9 bits (167), Expect = 1.180e-12
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   22 KIGVLGSGDVGQTLARGLASKGIEVMVGTRSPDSEKIKTFLAEAGDGIVAGTFEDTAKFG 201
            KIGVLGSGDVG+ L +G  S+G EV +G+R+P+S+K+KT++ + G     GTF D+A FG
Sbjct:    2 KIGVLGSGDVGKALGKGFVSRGHEVKIGSRTPNSDKLKTWVNQVGKNASTGTFADSAAFG 61          
BLAST of mRNA_M-pyrifera_M_contig100569.131.1 vs. uniprot
Match: A0A537F6Z6_9ARCH (F420_oxidored domain-containing protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A537F6Z6_9ARCH)

HSP 1 Score: 65.5 bits (158), Expect = 6.370e-12
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   22 KIGVLGSGDVGQTLARGLASKGIEVMVGTRSPDSEKIKTFLAEAGDGIVAGTFEDTAKFG 201
            K+G+LGSGDVG+ L +G  S+  EV + +R+P+S+K+KT++ E G    AGTF D+A FG
Sbjct:    2 KVGILGSGDVGRALGKGFVSRQHEVKIASRTPNSDKLKTWVNEVGRNASAGTFSDSAAFG 61          
BLAST of mRNA_M-pyrifera_M_contig100569.131.1 vs. uniprot
Match: A0A6J4JHD7_9CHLR (F420_oxidored domain-containing protein n=1 Tax=uncultured Chloroflexi bacterium TaxID=166587 RepID=A0A6J4JHD7_9CHLR)

HSP 1 Score: 66.6 bits (161), Expect = 9.590e-12
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   22 KIGVLGSGDVGQTLARGLASKGIEVMVGTRSPDSEKIKTFLAEAGDGIVAGTFEDTAKF 198
            +IGVLG+G VGQ L +GLA +G EV +G+R+PDSE ++ +LA AG G  AGTF + A F
Sbjct:    2 RIGVLGTGMVGQGLGQGLAERGHEVKIGSRTPDSETVREWLAGAGQGASAGTFAEAADF 60          
BLAST of mRNA_M-pyrifera_M_contig100569.131.1 vs. uniprot
Match: A0A538SJ01_9BACT (DNA-binding protein n=1 Tax=Candidatus Eisenbacteria bacterium TaxID=2212470 RepID=A0A538SJ01_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 1.830e-11
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   22 KIGVLGSGDVGQTLARGLASKGIEVMVGTRSPDSEKIKTFLAEAGDGIVAGTFEDTAKFG 201
            K+GVLGSG VGQTL  G  ++G +V +GTR P  +K+K ++ + G    AGTFE+TAKFG
Sbjct:    2 KVGVLGSGIVGQTLGAGFVARGHDVKLGTRDPGQDKVKAWVQKNGAKASAGTFEETAKFG 61          
BLAST of mRNA_M-pyrifera_M_contig100569.131.1 vs. uniprot
Match: A0A838T4Y6_9BACT (NAD(P)-binding domain-containing protein n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=A0A838T4Y6_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 4.950e-11
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   22 KIGVLGSGDVGQTLARGLASKGIEVMVGTRSPDSEKIKTFLAEAGDGIVAGTFEDTAKFG 201
            KIG+LGSGDVG+ L  GL   G +VM+G+RS D+EK+KT+  + G     GTF D A FG
Sbjct:    2 KIGILGSGDVGRALGTGLTRIGHDVMIGSRSADNEKLKTWAEKTGASASIGTFADAASFG 61          
BLAST of mRNA_M-pyrifera_M_contig100569.131.1 vs. uniprot
Match: A0A7C5F5E2_9BACT (DNA-binding protein n=2 Tax=unclassified candidate division Zixibacteria TaxID=2751484 RepID=A0A7C5F5E2_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 6.920e-11
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   22 KIGVLGSGDVGQTLARGLASKGIEVMVGTRSPDSEKIKTFLAEAGDGIVAGTFEDTAKFG 201
            K+GVLGSGDVGQ L  G    G EV +GTR P  EK+K ++A+ G    AGTF + A FG
Sbjct:    2 KVGVLGSGDVGQVLGAGFIKYGHEVKMGTRDPQQEKVKNWVAKNGSRASAGTFAEAASFG 61          
BLAST of mRNA_M-pyrifera_M_contig100569.131.1 vs. uniprot
Match: A0A5F2BMM1_9LEPT (DNA-binding protein n=5 Tax=Leptospira TaxID=171 RepID=A0A5F2BMM1_9LEPT)

HSP 1 Score: 64.3 bits (155), Expect = 7.110e-11
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   22 KIGVLGSGDVGQTLARGLASKGIEVMVGTRSPDSEKIKTFLAEAGDGIVAGTFEDTAKFG 201
            KIG+LGSG VGQTLA G    G EV +GTR+P   K+K +L++AG G   GTF +TA FG
Sbjct:    5 KIGILGSGIVGQTLANGFLKHGAEVKIGTRNPG--KLKEWLSKAGSGASIGTFAETASFG 62          
BLAST of mRNA_M-pyrifera_M_contig100569.131.1 vs. uniprot
Match: M6T4V7_LEPIR (NADP oxidoreductase coenzyme F420-dependent n=1 Tax=Leptospira interrogans serovar Bataviae str. HAI135 TaxID=1085538 RepID=M6T4V7_LEPIR)

HSP 1 Score: 61.6 bits (148), Expect = 1.310e-10
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   22 KIGVLGSGDVGQTLARGLASKGIEVMVGTRSPDSEKIKTFLAEAGDGIVAGTFEDTAKFG 201
            KIG+LGSG VGQTLA G    G EV +GTR  D EK+K +LA+AG G   G+F + A FG
Sbjct:    5 KIGILGSGIVGQTLANGFLKYGAEVKIGTR--DFEKLKDWLAKAGVGASIGSFSEAANFG 62          
BLAST of mRNA_M-pyrifera_M_contig100569.131.1 vs. uniprot
Match: A0A843CX80_9ARCH (NAD(P)-binding domain-containing protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A843CX80_9ARCH)

HSP 1 Score: 63.5 bits (153), Expect = 1.320e-10
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   22 KIGVLGSGDVGQTLARGLASKGIEVMVGTRSPDSEKIKTFLAEAGDGIVAGTFEDTAKFG 201
            K+G+LGSGDVG+TL +G A+ G  V +G+R+PDSEK+K +  EA      GTF + A FG
Sbjct:    2 KVGILGSGDVGKTLGKGFAAHGHSVKLGSRTPDSEKLKVWKKEAHGETSTGTFAEAAGFG 61          
BLAST of mRNA_M-pyrifera_M_contig100569.131.1 vs. uniprot
Match: A0A7J2Y366_9EURY (F420_oxidored domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A7J2Y366_9EURY)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-10
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   22 KIGVLGSGDVGQTLARGLASKGIEVMVGTRSPDSEKIKTFLAEAGDGIVAGTFEDTAKFG 201
            ++G+LGSG VGQ+L RG A +G EV++GTR+PDSEK+  +  E GD    GTF   A +G
Sbjct:    2 RVGILGSGVVGQSLGRGFAGRGHEVVLGTRTPDSEKLAPWKREVGDRGRTGTFAQAAAYG 61          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100569.131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q7BE41_9ARCH1.180e-1253.33F420_oxidored domain-containing protein n=8 Tax=Ar... [more]
A0A537F6Z6_9ARCH6.370e-1250.00F420_oxidored domain-containing protein n=1 Tax=Ca... [more]
A0A6J4JHD7_9CHLR9.590e-1255.93F420_oxidored domain-containing protein n=1 Tax=un... [more]
A0A538SJ01_9BACT1.830e-1153.33DNA-binding protein n=1 Tax=Candidatus Eisenbacter... [more]
A0A838T4Y6_9BACT4.950e-1153.33NAD(P)-binding domain-containing protein n=1 Tax=C... [more]
A0A7C5F5E2_9BACT6.920e-1153.33DNA-binding protein n=2 Tax=unclassified candidate... [more]
A0A5F2BMM1_9LEPT7.110e-1156.67DNA-binding protein n=5 Tax=Leptospira TaxID=171 R... [more]
M6T4V7_LEPIR1.310e-1056.67NADP oxidoreductase coenzyme F420-dependent n=1 Ta... [more]
A0A843CX80_9ARCH1.320e-1051.67NAD(P)-binding domain-containing protein n=1 Tax=C... [more]
A0A7J2Y366_9EURY1.370e-1051.67F420_oxidored domain-containing protein n=1 Tax=Eu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100569contigM-pyrifera_M_contig100569:54..340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size204
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.6796987-CDS-M-pyrifera_M_contig100569:53..1711622815502.6796987-CDS-M-pyrifera_M_contig100569:53..171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100569 54..171 -
1692277440.6183875-CDS-M-pyrifera_M_contig100569:53..1711692277440.6183875-CDS-M-pyrifera_M_contig100569:53..171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100569 54..171 -
1622815502.6944885-CDS-M-pyrifera_M_contig100569:254..3401622815502.6944885-CDS-M-pyrifera_M_contig100569:254..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100569 255..340 -
1692277440.6275735-CDS-M-pyrifera_M_contig100569:254..3401692277440.6275735-CDS-M-pyrifera_M_contig100569:254..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100569 255..340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100569.131.1prot_M-pyrifera_M_contig100569.131.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100569 54..340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100569.131.1

>prot_M-pyrifera_M_contig100569.131.1 ID=prot_M-pyrifera_M_contig100569.131.1|Name=mRNA_M-pyrifera_M_contig100569.131.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MAAGGVAKIGVLGSGDVGQTLARGLASKGIEVMVGTRSPDSEKIKTFLAE
AGDGIVAGTFEDTAKFG*
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mRNA from alignment at M-pyrifera_M_contig100569:54..340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100569.131.1 ID=mRNA_M-pyrifera_M_contig100569.131.1|Name=mRNA_M-pyrifera_M_contig100569.131.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=287bp|location=Sequence derived from alignment at M-pyrifera_M_contig100569:54..340- (Macrocystis pyrifera P11B4 male)
ATGGCAGCAGGAGGTGTGGCAAAGATCGGTGTACTGGGGTCTGGGGACGT AGGGCAGACTCTGGCACGTGGGCTTGCGTCCAAAGGGTAAGCAGAAAATG GGGAGGAAAAGGGAAAAAATCACCTTTCATTGCCCCAGGATGGTCCTTGT CCAATTCTCGCTCTTGCAGGATCGAAGTGATGGTAGGAACCCGCTCTCCA GATTCAGAGAAGATCAAGACCTTCCTGGCAGAAGCCGGGGATGGCATCGT GGCAGGGACATTCGAAGATACCGCCAAGTTTGGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100569:54..340-

>mRNA_M-pyrifera_M_contig100569.131.1 ID=mRNA_M-pyrifera_M_contig100569.131.1|Name=mRNA_M-pyrifera_M_contig100569.131.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig100569:54..340- (Macrocystis pyrifera P11B4 male)
ATGGCAGCAGGAGGTGTGGCAAAGATCGGTGTACTGGGGTCTGGGGACGT
AGGGCAGACTCTGGCACGTGGGCTTGCGTCCAAAGGATGGCAGCAGGAGG
TGTGGCAAAGATCGGTGTACTGGGGTCTGGGGACGTAGGGCAGACTCTGG
CACGTGGGCTTGCGTCCAAAGGGATCGAAGTGATGGTAGGAACCCGCTCT
CCAGATTCAGAGAAGATCAAGACCTTCCTGGCAGAAGCCGGGGATGGCAT
CGTGGCAGGGACATTCGAAGATACCGCCAAGTTTGGGTAAGATCGAAGTG
ATGGTAGGAACCCGCTCTCCAGATTCAGAGAAGATCAAGACCTTCCTGGC
AGAAGCCGGGGATGGCATCGTGGCAGGGACATTCGAAGATACCGCCAAGT
TTGGGTAA
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