mRNA_M-pyrifera_M_contig106028.1300.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106028.1300.1
Unique NamemRNA_M-pyrifera_M_contig106028.1300.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106028.1300.1 vs. uniprot
Match: A0A150GZP3_GONPE (SET domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GZP3_GONPE)

HSP 1 Score: 83.6 bits (205), Expect = 5.820e-16
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  115 QPQLEALCQEDGTRLEEEFALLCSGNEASSMLFIGNCMNHSCVPNVFAACGSPDARIQFIAMSPIAAGVELSRSYIDESLPQTARAATLARRYGFHCQCPTC 420
            QP L+AL        + E+A   +G EA++ + + +C+NHSC PN  AAC  PDA +  +A  PIAAG E++ SYID SLP  AR A LA  YGF C+C  C
Sbjct:  405 QPLLDAL--------DAEYA---TGAEATAFMALQSCINHSCDPNCTAACEGPDATVSVVAQRPIAAGTEITLSYIDVSLPYKARQAELAD-YGFVCRCERC 494          
BLAST of mRNA_M-pyrifera_M_contig106028.1300.1 vs. uniprot
Match: A0A2K3E7I3_CHLRE (SET domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E7I3_CHLRE)

HSP 1 Score: 79.7 bits (195), Expect = 1.340e-14
Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    1 LVTVDILRRLCGSIQQNAQRLAPVSELQ-YCIVTTQPELQPQLEALCQEDGT---RLEEEFALLCSGNEASSMLFIGNCMNHSCVPNVFAACGSPDARIQFIAMSPIAAGVELSRSYIDESLPQTARAATLARRYGFHCQCPTC 420
            L+T+++   + G  + N   L+  S ++ + +   + E  P   A+C+  G     L+ E+A  C   EA++ L + +C+NHSC PN  AAC S D     +A   IAAG E++ SYID SLP   R A L R YGF C+C  C
Sbjct:  415 LLTLEVYGSVVGLFELNNLGLSVCSPVEDFFLAVDEQEEGPDKAAVCKLTGPLLDALDAEYATPC---EATAFLALQSCINHSCDPNCTAACDSGDRTATLLAQRDIAAGEEITLSYIDVSLPYKRRQAEL-RDYGFVCKCERC 554          
BLAST of mRNA_M-pyrifera_M_contig106028.1300.1 vs. uniprot
Match: A0A835WJB1_9CHLO (SET domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WJB1_9CHLO)

HSP 1 Score: 78.2 bits (191), Expect = 4.690e-14
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    1 LVTVDILRRLCGSIQQNAQRLAPVSELQ-YCIVTTQPELQPQLEALCQEDGT---RLEEEFALLCSGNEASSMLFIGNCMNHSCVPNVFAACGSPDARIQFIAMSPIAAGVELSRSYIDESLPQTARAATLARRYGFHCQCPTC 420
            L+T+++   + G  + N   L+  S ++ + +   + E  P   A+C+  G     L+ E+A  C   EA++ L + +C+NHSC PN  AAC S D     +A   IAAG E++ SYID +LP   R A L R YGF C+C  C
Sbjct:  466 LLTLEVYGSVVGLFELNNLGLSVCSPVEDFFLAVDEEEEGPDKAAVCKLTGPLLDALDAEYATPC---EATAFLALQSCINHSCDPNATAACDSGDRTATVLAQRDIAAGDEITLSYIDVNLPYKRRQAEL-RDYGFVCKCERC 605          
BLAST of mRNA_M-pyrifera_M_contig106028.1300.1 vs. uniprot
Match: D8U5L8_VOLCA (SET and zf-MYND domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U5L8_VOLCA)

HSP 1 Score: 70.5 bits (171), Expect = 2.160e-11
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  115 QPQLEALCQEDGTRLEEEFALLCSGNEASSMLFIGNCMNHSCVPNVFAACGSPDARIQFIAMSPIAAGVELSRSYIDESLPQTARAATLARRYGFHCQCPTCL 423
            QP L+AL        + E+A  C   E+++ L + +C+NHSC PN  A C + D  +  +A   IAAG E++ SYID +LP   R A L R YGF C+C  C+
Sbjct:  373 QPLLDAL--------DSEYASPC---ESTAFLALQSCINHSCDPNCTAVCDTGDRTVTVLAQRDIAAGEEITLSYIDVTLPYKERQAAL-RDYGFVCRCTRCV 463          
BLAST of mRNA_M-pyrifera_M_contig106028.1300.1 vs. uniprot
Match: A0A836BB19_9CHLO (SET domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BB19_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 5.480e-8
Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 1
Query:  199 SSMLFIGNCMNHSCVPNVFAACGSPDARIQFIAMSPIAAGVELSRSYIDESLPQTARAATLARRYGFHCQCPTC 420
            S+   + + +NHSC P++  A    D    F+A   IAAG ELS SY+D  LP  AR   L   YGF C+CP C
Sbjct:  451 SATYLLASLLNHSCEPSLELAFPGMDGTAAFVAARDIAAGEELSVSYMDVGLPYEARQRHLEWSYGFVCRCPRC 524          
BLAST of mRNA_M-pyrifera_M_contig106028.1300.1 vs. uniprot
Match: A0A0C9X1D8_9AGAR (SET domain-containing protein n=2 Tax=Laccaria TaxID=29882 RepID=A0A0C9X1D8_9AGAR)

HSP 1 Score: 60.1 bits (144), Expect = 8.400e-8
Identity = 31/79 (39.24%), Postives = 39/79 (49.37%), Query Frame = 1
Query:  184 SGNEASSMLFIGNCMNHSCVPNVFAACGSPDARIQFIAMSPIAAGVELSRSYIDESLPQTARAATLARRYGFHCQCPTC 420
            S     +   I N  NHSC PN       P       A+ PI AG E++++YID SLP++ R A L   YGF C C  C
Sbjct:  151 SAKNYGAAFLILNRANHSCGPNAAIKWNLPTLTASMYALRPILAGEEITKTYIDPSLPRSERIAHLQENYGFTCDCQWC 229          
BLAST of mRNA_M-pyrifera_M_contig106028.1300.1 vs. uniprot
Match: A0A5D6YCX3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCX3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 8.650e-8
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1
Query:  229 NHSCVPNVFAACGSPDARIQFIAMSPIAAGVELSRSYIDESLPQTARAATLARRYGFHCQCPTC 420
            NHSC PN      + + R++F AM  IAAG EL+ SY+D +LP+  R   L ++Y F C+C  C
Sbjct:  177 NHSCEPNCAVTFSAKEQRVEFRAMRAIAAGEELTHSYVDIALPRRDRQQRLEQQYHFQCKCVRC 240          
BLAST of mRNA_M-pyrifera_M_contig106028.1300.1 vs. uniprot
Match: U6N5A1_9EIME (SET domain-containing protein n=2 Tax=Eimeria TaxID=5800 RepID=U6N5A1_9EIME)

HSP 1 Score: 58.2 bits (139), Expect = 4.300e-7
Identity = 29/75 (38.67%), Postives = 38/75 (50.67%), Query Frame = 1
Query:  196 ASSMLFIGNCMNHSCVPNVFAACGSPDARIQFIAMSPIAAGVELSRSYIDESLPQTARAATLARRYGFHCQCPTC 420
            A+ +  + +C NHSC PN                  P+AAG EL+ SYI  +LP+  R A L+  YGF C CP C
Sbjct:  420 AAGLFVLQSCCNHSCSPNCXXXXXXXXXXXXXXXAKPVAAGTELTLSYIPLALPRQQRQALLSSSYGFLCCCPRC 494          
BLAST of mRNA_M-pyrifera_M_contig106028.1300.1 vs. uniprot
Match: A0A0M9G4E4_9TRYP (SET domain-containing protein n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9G4E4_9TRYP)

HSP 1 Score: 57.8 bits (138), Expect = 5.650e-7
Identity = 49/147 (33.33%), Postives = 64/147 (43.54%), Query Frame = 1
Query:   28 LCGSIQQNAQRLAPVSELQYCIVTTQPELQPQLEALCQEDGTRLEEEF-------------ALLCSGNEASSMLFIGNCMNHSCVPNV---FAACGSPDARIQFIAMSPIAAGVELSRSYIDESLPQTARAATLARRYGFHCQCPTC 420
            L G++  N Q  +P S           +L   L A C  DG  L +EF             A L   +    +  +G   NHSC PN+   +AA    D  +  +A+  IAAG EL+ SYID SLP   R   L   Y F C+CP C
Sbjct:  298 LLGAVLLNGQDRSPPSPY---------DLHRDLVA-CLPDGEALMKEFEHNVLQTSSLTDAADLSHSSRGQGIYGVGCLFNHSCDPNLNVQYAAVN--DETLSVVALRDIAAGEELTISYIDTSLPYAVRQQQLLDHYLFECKCPRC 432          
BLAST of mRNA_M-pyrifera_M_contig106028.1300.1 vs. uniprot
Match: A0A7J7B6Q5_9COLE (Histone-lysine N-trimethyltransferase SMYD5 n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7B6Q5_9COLE)

HSP 1 Score: 55.8 bits (133), Expect = 2.530e-6
Identity = 49/152 (32.24%), Postives = 71/152 (46.71%), Query Frame = 1
Query:    1 LVTVDILRRLCGSIQQNAQRLAPVSELQYCIVTTQPEL------QPQLEALCQ---EDGTRLEEEFALLCSGNEASSMLFIGNCMNHSCVPNVFAACGSPDARIQFIAMSPIAAGVELSRSYIDES---LPQTARAATLARRYGFHCQCPTC 420
            L+TV+  + L   I  NAQ +   +  Q+  VT   EL      + QL+       ED  R    F      NE  ++  + +  NHSC+PN        ++R+  +A+  IAAG E+S SY+DE      + +R  TL   Y F CQCP C
Sbjct:  216 LLTVEGFQSLLALIGTNAQGVGTSAVSQW--VTRSSELPLPDAEKQQLDNFIDKLYEDMDRNSGNFL----NNEGVALYSLQSSANHSCIPNAEPTYLHNNSRLSLVALKDIAAGEEISISYLDECNLFRSRHSRHKTLMENYLFICQCPKC 361          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106028.1300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A150GZP3_GONPE5.820e-1647.06SET domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A2K3E7I3_CHLRE1.340e-1436.81SET domain-containing protein n=2 Tax=Chlamydomona... [more]
A0A835WJB1_9CHLO4.690e-1436.11SET domain-containing protein n=1 Tax=Chlamydomona... [more]
D8U5L8_VOLCA2.160e-1140.78SET and zf-MYND domain-containing protein n=1 Tax=... [more]
A0A836BB19_9CHLO5.480e-843.24SET domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A0C9X1D8_9AGAR8.400e-839.24SET domain-containing protein n=2 Tax=Laccaria Tax... [more]
A0A5D6YCX3_9STRA8.650e-843.75Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
U6N5A1_9EIME4.300e-738.67SET domain-containing protein n=2 Tax=Eimeria TaxI... [more]
A0A0M9G4E4_9TRYP5.650e-733.33SET domain-containing protein n=1 Tax=Leptomonas p... [more]
A0A7J7B6Q5_9COLE2.530e-632.24Histone-lysine N-trimethyltransferase SMYD5 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106028contigM-pyrifera_M_contig106028:16..450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.9
Seed ortholog evalue5.5e-13
Seed eggNOG ortholog3055.EDP09423
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
EggNOG OGs34HFI@3041,37HMW@33090,COG2940@1,KOG2084@2759
COG Functional cat.B
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.0000505-CDS-M-pyrifera_M_contig106028:15..4501622815570.0000505-CDS-M-pyrifera_M_contig106028:15..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106028 16..450 +
1692277468.4089313-CDS-M-pyrifera_M_contig106028:15..4501692277468.4089313-CDS-M-pyrifera_M_contig106028:15..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106028 16..450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106028.1300.1prot_M-pyrifera_M_contig106028.1300.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106028 16..450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106028.1300.1

>prot_M-pyrifera_M_contig106028.1300.1 ID=prot_M-pyrifera_M_contig106028.1300.1|Name=mRNA_M-pyrifera_M_contig106028.1300.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
LVTVDILRRLCGSIQQNAQRLAPVSELQYCIVTTQPELQPQLEALCQEDG
TRLEEEFALLCSGNEASSMLFIGNCMNHSCVPNVFAACGSPDARIQFIAM
SPIAAGVELSRSYIDESLPQTARAATLARRYGFHCQCPTCLRNT*
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mRNA from alignment at M-pyrifera_M_contig106028:16..450+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106028.1300.1 ID=mRNA_M-pyrifera_M_contig106028.1300.1|Name=mRNA_M-pyrifera_M_contig106028.1300.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig106028:16..450+ (Macrocystis pyrifera P11B4 male)
CTGGTCACTGTTGATATTCTACGCAGGCTCTGTGGATCGATTCAGCAGAA TGCGCAGCGCTTGGCACCTGTTTCTGAGCTGCAGTACTGCATAGTCACCA CCCAGCCAGAGCTCCAACCCCAGTTGGAAGCTCTCTGTCAAGAAGACGGG ACTCGACTTGAAGAGGAGTTTGCTCTTCTCTGCAGTGGCAACGAGGCCTC CAGCATGTTATTTATCGGCAACTGCATGAACCACTCATGCGTCCCCAACG TGTTTGCAGCCTGTGGCAGCCCAGATGCGCGCATTCAGTTCATTGCCATG TCTCCCATTGCTGCAGGTGTCGAGCTGAGCCGCTCCTACATTGACGAGAG CCTCCCACAGACAGCCAGGGCAGCCACGCTTGCCAGACGGTATGGATTCC ATTGCCAATGCCCAACCTGCTTGCGCAATACTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106028:16..450+

>mRNA_M-pyrifera_M_contig106028.1300.1 ID=mRNA_M-pyrifera_M_contig106028.1300.1|Name=mRNA_M-pyrifera_M_contig106028.1300.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig106028:16..450+ (Macrocystis pyrifera P11B4 male)
CTGGTCACTGTTGATATTCTACGCAGGCTCTGTGGATCGATTCAGCAGAA
TGCGCAGCGCTTGGCACCTGTTTCTGAGCTGCAGTACTGCATAGTCACCA
CCCAGCCAGAGCTCCAACCCCAGTTGGAAGCTCTCTGTCAAGAAGACGGG
ACTCGACTTGAAGAGGAGTTTGCTCTTCTCTGCAGTGGCAACGAGGCCTC
CAGCATGTTATTTATCGGCAACTGCATGAACCACTCATGCGTCCCCAACG
TGTTTGCAGCCTGTGGCAGCCCAGATGCGCGCATTCAGTTCATTGCCATG
TCTCCCATTGCTGCAGGTGTCGAGCTGAGCCGCTCCTACATTGACGAGAG
CCTCCCACAGACAGCCAGGGCAGCCACGCTTGCCAGACGGTATGGATTCC
ATTGCCAATGCCCAACCTGCTTGCGCAATACTTAACTGGTCACTGTTGAT
ATTCTACGCAGGCTCTGTGGATCGATTCAGCAGAATGCGCAGCGCTTGGC
ACCTGTTTCTGAGCTGCAGTACTGCATAGTCACCACCCAGCCAGAGCTCC
AACCCCAGTTGGAAGCTCTCTGTCAAGAAGACGGGACTCGACTTGAAGAG
GAGTTTGCTCTTCTCTGCAGTGGCAACGAGGCCTCCAGCATGTTATTTAT
CGGCAACTGCATGAACCACTCATGCGTCCCCAACGTGTTTGCAGCCTGTG
GCAGCCCAGATGCGCGCATTCAGTTCATTGCCATGTCTCCCATTGCTGCA
GGTGTCGAGCTGAGCCGCTCCTACATTGACGAGAGCCTCCCACAGACAGC
CAGGGCAGCCACGCTTGCCAGACGGTATGGATTCCATTGCCAATGCCCAA
CCTGCTTGCGCAATACTTAA
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