mRNA_M-pyrifera_M_contig100561.129.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100561.129.1
Unique NamemRNA_M-pyrifera_M_contig100561.129.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100561.129.1 vs. uniprot
Match: A0A059LQY7_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LQY7_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 2.340e-23
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   94 GHWGSRLKRASEGIVVVRFEMMFNAYCLSCGNLVPKGRRFDAEKQKVGQFGSEPIFTFSMRCKDCGNGLVVRSDPEHSDFVFEKGLRRKIEPRTGRDPGV 393
            G  GSR ++  EGI+V+RFE+ FNA+C  CG+L+ KG RF+AEKQ++G++ S  +++F MR   C   L V +DP + +++  KG RRK E       G 
Sbjct:   15 GALGSRARKLDEGILVIRFELPFNAWCAGCGHLMGKGVRFNAEKQEIGRYHSTRVWSFRMRTPCCSTALEVHTDPRNCEYLLVKGARRKHESYDAAQAGT 114          
BLAST of mRNA_M-pyrifera_M_contig100561.129.1 vs. uniprot
Match: A0A2H9TN68_9FUNG (Coiled-coil domain-containing protein 130 n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TN68_9FUNG)

HSP 1 Score: 100 bits (248), Expect = 4.000e-23
Identity = 40/96 (41.67%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  106 SRLKRASEGIVVVRFEMMFNAYCLSCGNLVPKGRRFDAEKQKVGQFGSEPIFTFSMRCKDCGNGLVVRSDPEHSDFVFEKGLRRKIEPRTGRDPGV 393
            +R ++ +EGI+V+RFEM FN +CL C   + +G RF+AEK+KVG + S  I++F M+C  C + + +R+DP++S++V  +G +RK+E R+  + G+
Sbjct:   15 ARARKLNEGILVIRFEMPFNIWCLGCNQHIGRGVRFNAEKKKVGDYYSTAIWSFRMKCHLCSHWMEIRTDPKNSEYVVTEGAKRKMEERSAEELGI 110          
BLAST of mRNA_M-pyrifera_M_contig100561.129.1 vs. uniprot
Match: A0A0R3T2J0_RODNA (Uncharacterized protein n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3T2J0_RODNA)

HSP 1 Score: 100 bits (248), Expect = 1.450e-22
Identity = 41/86 (47.67%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  109 RLKRASEGIVVVRFEMMFNAYCLSCGNLVPKGRRFDAEKQKVGQFGSEPIFTFSMRCKDCGNGLVVRSDPEHSDFVFEKGLRRKIE 366
            R ++A +GI+++RFEM +NA+CLSC   +  G R++AEK KVG + S PIF FSM C  C   +V+R+DP++ D++  +G+RRKI+
Sbjct:   35 RGRKADKGIIIIRFEMPYNAWCLSCKQPIGMGVRYNAEKTKVGMYHSTPIFEFSMNCAMCAGKIVMRTDPQNFDYICVEGIRRKIQ 120          
BLAST of mRNA_M-pyrifera_M_contig100561.129.1 vs. uniprot
Match: A0A0R3WZS0_HYDTA (Uncharacterized protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WZS0_HYDTA)

HSP 1 Score: 99.8 bits (247), Expect = 2.430e-22
Identity = 41/86 (47.67%), Postives = 64/86 (74.42%), Query Frame = 1
Query:  109 RLKRASEGIVVVRFEMMFNAYCLSCGNLVPKGRRFDAEKQKVGQFGSEPIFTFSMRCKDCGNGLVVRSDPEHSDFVFEKGLRRKIE 366
            R ++A +GI+++RFEM +NA+CLSC   +  G R++AEK+KVG + S PIF FSM C  C   +V+++DP++ D+V  +G+RRKI+
Sbjct:   41 RGRKADKGIIIIRFEMPYNAWCLSCKKPIGMGVRYNAEKKKVGMYHSTPIFQFSMNCAMCAGRIVMQTDPQNFDYVCVEGIRRKIQ 126          
BLAST of mRNA_M-pyrifera_M_contig100561.129.1 vs. uniprot
Match: A0A0R3WBF3_TAEAS (Uncharacterized protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3WBF3_TAEAS)

HSP 1 Score: 99.0 bits (245), Expect = 4.120e-22
Identity = 39/86 (45.35%), Postives = 64/86 (74.42%), Query Frame = 1
Query:  109 RLKRASEGIVVVRFEMMFNAYCLSCGNLVPKGRRFDAEKQKVGQFGSEPIFTFSMRCKDCGNGLVVRSDPEHSDFVFEKGLRRKIE 366
            R ++A +GI+++RFEM +NA+CLSC   +  G R++AEK+KVG + S PIF FSM C  C   +V+++DP++ D++  +G+RRK++
Sbjct:   33 RGRKADKGIIIIRFEMPYNAWCLSCKKPIGMGVRYNAEKKKVGMYHSTPIFQFSMNCAMCAGRIVMQTDPQNFDYICVEGIRRKVQ 118          
BLAST of mRNA_M-pyrifera_M_contig100561.129.1 vs. uniprot
Match: A0A0R3UL67_MESCO (Uncharacterized protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UL67_MESCO)

HSP 1 Score: 98.6 bits (244), Expect = 5.880e-22
Identity = 38/86 (44.19%), Postives = 64/86 (74.42%), Query Frame = 1
Query:  109 RLKRASEGIVVVRFEMMFNAYCLSCGNLVPKGRRFDAEKQKVGQFGSEPIFTFSMRCKDCGNGLVVRSDPEHSDFVFEKGLRRKIE 366
            R ++A +GI+++RFEM +NA+CLSC   +  G R++AEK+KVG + S P+F FSM C  C   +V+++DP++ D++  +G+RRK++
Sbjct:   35 RGRKADKGIIIIRFEMPYNAWCLSCKKPIGMGVRYNAEKKKVGMYHSTPVFQFSMNCAMCAGRIVMQTDPQNFDYICVEGIRRKVQ 120          
BLAST of mRNA_M-pyrifera_M_contig100561.129.1 vs. uniprot
Match: A0A7S0BRI7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BRI7_9RHOD)

HSP 1 Score: 94.4 bits (233), Expect = 6.830e-22
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  109 RLKRASEGIVVVRFEMMFNAYCLSCGNLVPKGRRFDAEKQKVGQFGSEPIFTFSMRCKDCGNGLVVRSDPEHSDFVFEKGLRRKIEPRTGRD 384
            R K+  +GI+ VRFEM FN +C  C N + KG R++A+K KVG + S PI++F M+C  C N + +R+DP+  D+V   G +RK+E  T  D
Sbjct:   10 RAKKLKDGILRVRFEMPFNIWCNGCENHIGKGVRYNADKSKVGNYHSTPIYSFRMKCHLCDNYIEIRTDPQARDYVVYSGGKRKVEEWTAAD 101          
BLAST of mRNA_M-pyrifera_M_contig100561.129.1 vs. uniprot
Match: A0A397VWB2_9GLOM (CWC16 protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397VWB2_9GLOM)

HSP 1 Score: 95.5 bits (236), Expect = 7.280e-22
Identity = 38/88 (43.18%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  103 GSRLKRASEGIVVVRFEMMFNAYCLSCGNLVPKGRRFDAEKQKVGQFGSEPIFTFSMRCKDCGNGLVVRSDPEHSDFVFEKGLRRKIE 366
            G R ++ S+GI++VRFE+ FN +C  C   V KG R++AEK+K+G + S PIF+F M+C  C N + + +DP+++++V   G R+K+E
Sbjct:   29 GDRARKISQGILIVRFELPFNIWCEGCDKHVGKGVRYNAEKKKIGNYFSTPIFSFRMKCHLCDNWIEIHTDPKNAEYVVVSGARKKVE 116          
BLAST of mRNA_M-pyrifera_M_contig100561.129.1 vs. uniprot
Match: A0A0R3SR18_HYMDI (Uncharacterized protein n=2 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SR18_HYMDI)

HSP 1 Score: 98.2 bits (243), Expect = 7.610e-22
Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  109 RLKRASEGIVVVRFEMMFNAYCLSCGNLVPKGRRFDAEKQKVGQFGSEPIFTFSMRCKDCGNGLVVRSDPEHSDFVFEKGLRRKIE 366
            R ++A +GI+++RFEM +NA+CLSC   +  G R++AEK KVG + S PIF F+M C  C   +V+R+DP++ D++  +G+RRKI+
Sbjct:   35 RGRKADKGIIIIRFEMPYNAWCLSCKQPIGMGVRYNAEKTKVGMYHSTPIFEFTMNCAMCAGKIVMRTDPQNFDYMCVEGIRRKIQ 120          
BLAST of mRNA_M-pyrifera_M_contig100561.129.1 vs. uniprot
Match: A0A068YBE6_ECHMU (Coiled coil domain containing protein 130 n=3 Tax=Echinococcus TaxID=6209 RepID=A0A068YBE6_ECHMU)

HSP 1 Score: 98.2 bits (243), Expect = 1.040e-21
Identity = 41/86 (47.67%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  109 RLKRASEGIVVVRFEMMFNAYCLSCGNLVPKGRRFDAEKQKVGQFGSEPIFTFSMRCKDCGNGLVVRSDPEHSDFVFEKGLRRKIE 366
            R ++A +GI+++RFEM +NA+CLSC   +  G R++AEK+KVG   S PIF FSM C  C   +V+++DP++ D+V  +G+RRKI+
Sbjct:   64 RGRKADKGIIIIRFEMPYNAWCLSCKKPIGMGVRYNAEKKKVGMHHSTPIFQFSMNCAMCAGRIVMQTDPQNFDYVCVEGIRRKIQ 149          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100561.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059LQY7_9CHLO2.340e-2343.00Uncharacterized protein (Fragment) n=1 Tax=Helicos... [more]
A0A2H9TN68_9FUNG4.000e-2341.67Coiled-coil domain-containing protein 130 n=1 Tax=... [more]
A0A0R3T2J0_RODNA1.450e-2247.67Uncharacterized protein n=1 Tax=Rodentolepis nana ... [more]
A0A0R3WZS0_HYDTA2.430e-2247.67Uncharacterized protein n=1 Tax=Hydatigena taeniae... [more]
A0A0R3WBF3_TAEAS4.120e-2245.35Uncharacterized protein n=1 Tax=Taenia asiatica Ta... [more]
A0A0R3UL67_MESCO5.880e-2244.19Uncharacterized protein n=2 Tax=Mesocestoides cort... [more]
A0A7S0BRI7_9RHOD6.830e-2244.57Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A397VWB2_9GLOM7.280e-2243.18CWC16 protein n=1 Tax=Gigaspora rosea TaxID=44941 ... [more]
A0A0R3SR18_HYMDI7.610e-2246.51Uncharacterized protein n=2 Tax=Hymenolepis diminu... [more]
A0A068YBE6_ECHMU1.040e-2147.67Coiled coil domain containing protein 130 n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100561contigM-pyrifera_M_contig100561:9..404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue7.2e-20
Seed eggNOG ortholog5911.EAR91940
KEGG koko:K13115
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Family of unknown function (DUF572)
EggNOG OGs3ZEWF@5878,COG5134@1,KOG2990@2759
COG Functional cat.S
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons1
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.5750177-CDS-M-pyrifera_M_contig100561:8..4041622815502.5750177-CDS-M-pyrifera_M_contig100561:8..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100561 9..404 -
1692277440.577823-CDS-M-pyrifera_M_contig100561:8..4041692277440.577823-CDS-M-pyrifera_M_contig100561:8..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100561 9..404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100561.129.1prot_M-pyrifera_M_contig100561.129.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100561 9..404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100561.129.1

>prot_M-pyrifera_M_contig100561.129.1 ID=prot_M-pyrifera_M_contig100561.129.1|Name=mRNA_M-pyrifera_M_contig100561.129.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MSQHHLTLRAAGGDGFYFGADGGTRKPRVPQGHWGSRLKRASEGIVVVRF
EMMFNAYCLSCGNLVPKGRRFDAEKQKVGQFGSEPIFTFSMRCKDCGNGL
VVRSDPEHSDFVFEKGLRRKIEPRTGRDPGVT
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mRNA from alignment at M-pyrifera_M_contig100561:9..404-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100561.129.1 ID=mRNA_M-pyrifera_M_contig100561.129.1|Name=mRNA_M-pyrifera_M_contig100561.129.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig100561:9..404- (Macrocystis pyrifera P11B4 male)
ATGTCGCAGCACCACCTGACGTTGCGTGCGGCAGGAGGGGACGGGTTCTA CTTCGGCGCGGATGGGGGGACGCGAAAGCCTCGTGTGCCGCAAGGGCACT GGGGCAGTCGTCTGAAACGGGCCAGTGAGGGGATTGTGGTGGTGCGGTTC GAGATGATGTTCAACGCGTACTGCCTGTCTTGCGGGAATCTGGTGCCAAA GGGGCGTCGTTTCGATGCGGAGAAGCAGAAAGTGGGGCAGTTTGGAAGTG AGCCCATTTTCACCTTCTCCATGCGCTGCAAGGACTGTGGCAATGGGCTT GTGGTGCGCAGTGACCCAGAACACTCGGACTTTGTCTTCGAAAAGGGGCT TCGGCGAAAGATTGAGCCGAGAACCGGTCGAGACCCAGGGGTGACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100561:9..404-

>mRNA_M-pyrifera_M_contig100561.129.1 ID=mRNA_M-pyrifera_M_contig100561.129.1|Name=mRNA_M-pyrifera_M_contig100561.129.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig100561:9..404- (Macrocystis pyrifera P11B4 male)
ATGTCGCAGCACCACCTGACGTTGCGTGCGGCAGGAGGGGACGGGTTCTA
CTTCGGCGCGGATGGGGGGACGCGAAAGCCTCGTGTGCCGCAAGGGCACT
GGGGCAGTCGTCTGAAACGGGCCAGTGAGGGGATTGTGGTGGTGCGGTTC
GAGATGATGTTCAACGCGTACTGCCTGTCTTGCGGGAATCTGGTGCCAAA
GGGGCGTCGTTTCGATGCGGAGAAGCAGAAAGTGGGGCAGTTTGGAAGTG
AGCCCATTTTCACCTTCTCCATGCGCTGCAAGGACTGTGGCAATGGGCTT
GTGGTGCGCAGTGACCCAGAACACTCGGACTTTGTCTTCGAAAAGGGGCT
TCGGCGAAAGATTGAGCCGAGAACCGGTCGAGACCCAGGGGTGACTATGT
CGCAGCACCACCTGACGTTGCGTGCGGCAGGAGGGGACGGGTTCTACTTC
GGCGCGGATGGGGGGACGCGAAAGCCTCGTGTGCCGCAAGGGCACTGGGG
CAGTCGTCTGAAACGGGCCAGTGAGGGGATTGTGGTGGTGCGGTTCGAGA
TGATGTTCAACGCGTACTGCCTGTCTTGCGGGAATCTGGTGCCAAAGGGG
CGTCGTTTCGATGCGGAGAAGCAGAAAGTGGGGCAGTTTGGAAGTGAGCC
CATTTTCACCTTCTCCATGCGCTGCAAGGACTGTGGCAATGGGCTTGTGG
TGCGCAGTGACCCAGAACACTCGGACTTTGTCTTCGAAAAGGGGCTTCGG
CGAAAGATTGAGCCGAGAACCGGTCGAGACCCAGGGGTGACT
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