mRNA_M-pyrifera_M_contig10595.1279.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10595.1279.1
Unique NamemRNA_M-pyrifera_M_contig10595.1279.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10595.1279.1 vs. uniprot
Match: D8LNI7_ECTSI (SRP_SPB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNI7_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 4.000e-68
Identity = 114/153 (74.51%), Postives = 137/153 (89.54%), Query Frame = 1 
Query:    1 ETQFKEQMEELSLKETFDLDDFAKIIEEPLDKISAKMPWNKNKQELKDMKMQRQVLKALTKAQRKKPETIRAGHRQAIADKAACSTEEVNKLLAAFRELKAMHGWLSTRRKRKEKIPTTQEELRVMAGNPNGTMLVNFMRVKKSGSGRPSFGF 459
            E QFKEQMEELSLKE+F+LDDFAKIIEEPLDK SAK+PWNK+++EL+ MKMQ++VL+ LT  QRK PE+IR GHRQ IAD+A  +TE+VNK LAA+RELKAMHGWLSTRRKRKE+IP+TQEEL VMA +P+GTML+NFM+VK+S SG+PSF F
Sbjct:   83 EKQFKEQMEELSLKESFNLDDFAKIIEEPLDKFSAKLPWNKSREELQAMKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVTTEDVNKALAAYRELKAMHGWLSTRRKRKERIPSTQEELHVMATDPSGTMLMNFMKVKRSNSGKPSFAF 235
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10595.1279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNI7_ECTSI4.000e-6874.51SRP_SPB domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10595contigM-pyrifera_M_contig10595:4828..8588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.4
Seed ortholog evalue7.2e-53
Seed eggNOG ortholog2880.D8LNI7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Signal peptide binding domain
EggNOG OGs2AVD2@1,2RZW3@2759
Ec32 ortholog descriptionSignal recognition particle, SRP54 subunit, M-domain
Ec32 orthologEc-24_002990.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1090
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10595.1279.1prot_M-pyrifera_M_contig10595.1279.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10595 5456..8567 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.870992-UTR-M-pyrifera_M_contig10595:4827..54551622815568.870992-UTR-M-pyrifera_M_contig10595:4827..5455Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10595 4828..5455 -
1692277467.8953762-UTR-M-pyrifera_M_contig10595:4827..54551692277467.8953762-UTR-M-pyrifera_M_contig10595:4827..5455Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10595 4828..5455 -
1622815568.941841-UTR-M-pyrifera_M_contig10595:8567..85881622815568.941841-UTR-M-pyrifera_M_contig10595:8567..8588Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10595 8568..8588 -
1692277467.9503636-UTR-M-pyrifera_M_contig10595:8567..85881692277467.9503636-UTR-M-pyrifera_M_contig10595:8567..8588Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10595 8568..8588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.8807173-CDS-M-pyrifera_M_contig10595:5455..55011622815568.8807173-CDS-M-pyrifera_M_contig10595:5455..5501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10595 5456..5501 -
1692277467.9088047-CDS-M-pyrifera_M_contig10595:5455..55011692277467.9088047-CDS-M-pyrifera_M_contig10595:5455..5501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10595 5456..5501 -
1622815568.8901339-CDS-M-pyrifera_M_contig10595:6035..61991622815568.8901339-CDS-M-pyrifera_M_contig10595:6035..6199Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10595 6036..6199 -
1692277467.9215207-CDS-M-pyrifera_M_contig10595:6035..61991692277467.9215207-CDS-M-pyrifera_M_contig10595:6035..6199Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10595 6036..6199 -
1622815568.8997352-CDS-M-pyrifera_M_contig10595:7915..80861622815568.8997352-CDS-M-pyrifera_M_contig10595:7915..8086Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10595 7916..8086 -
1692277467.9321008-CDS-M-pyrifera_M_contig10595:7915..80861692277467.9321008-CDS-M-pyrifera_M_contig10595:7915..8086Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10595 7916..8086 -
1622815568.9296105-CDS-M-pyrifera_M_contig10595:8507..85671622815568.9296105-CDS-M-pyrifera_M_contig10595:8507..8567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10595 8508..8567 -
1692277467.9404452-CDS-M-pyrifera_M_contig10595:8507..85671692277467.9404452-CDS-M-pyrifera_M_contig10595:8507..8567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10595 8508..8567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10595.1279.1

>prot_M-pyrifera_M_contig10595.1279.1 ID=prot_M-pyrifera_M_contig10595.1279.1|Name=mRNA_M-pyrifera_M_contig10595.1279.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
MEELSLKETFDLDDFAKIIEEPLDKISAKMPWNKNKQELKDMKMQRQVLK
ALTKAQRKKPETIRAGHRQAIADKAACSTEEVNKLLAAFRELKAMHGWLS
TRRKRKEKIPTTQEELRVMAGNPNGTMLVNFMRVKKSGSGRPSFGF*
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mRNA from alignment at M-pyrifera_M_contig10595:4828..8588-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10595.1279.1 ID=mRNA_M-pyrifera_M_contig10595.1279.1|Name=mRNA_M-pyrifera_M_contig10595.1279.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3761bp|location=Sequence derived from alignment at M-pyrifera_M_contig10595:4828..8588- (Macrocystis pyrifera P11B4 male)
GAGACTCAGTTCAAAGAGCAGATGGAGGAGCTGTCCTTGAAGGAGACGTT
CGACCTCGACGACTTCGCTAAGATTATAGAGGTGCGTGCATGCGCAACTT
CTAGAGGAAGCCCTTGGGGGTGCCAAAAAAAGCGAAAAGTGACTGGCTTG
CTTGTTTGATCGAGTTGTGTCTGTCCTCTTTCTTGTTTGCTTGCTTGTTT
GCTTGCTTGCTTGATTGTGACTGCCAGCTGGCTTGCTGGCTTGCTTGCTT
GTTGGTTTTCTCGCTTGCTAACTTGCTTGCTTGATTGATTGTGTCTGCCA
GCATGCTTGCTGGCTTGTTGGGTTTCTCGCTTTGCGTGCTTGCTGACTTG
CCTGCCTGCCTGCCTGCTTTCTTGCTTGCCTGCTTGCTTTCCTGCTCCCT
TGCTTGCTTTCTCGCATGCATGCTTGCTTGAACTTCACTTGCGTCTTGCT
TCAATGCTTTTATTTTCGATGTTAATCCGATGTTATTGTTTTTTTCATGC
AGGAACCACTGGACAAGATCTCAGCGAAAATGCCCTGGAACAAGAACAAG
CAGGAACTGAAGGACATGAAGATGCAGAGACAAGTGCTCAAGGCCCTAAC
CAAGGCGCAGAGAAAAAAGCCAGAGACCATCCGCGCAGGTCACCGACAAG
CAATCGCCGACAAGGCCGCATGCGTGAGTATGGCTGTGAATTGACTCACT
AGAAATAGGCGCATCATAGCTAATAACACTATTAATAGATGATCATTCCC
GTCGAGCACAACAACCAAAAATCACGAATCCTGACGAAAACAAAGTGATA
TTTTCGCAAATCGTGATGGTTGTCACGAACCTTTACGTTGACAAGGTTTC
ACACCTTGTACCTGTACAGGCCATCGATTTCCACCGGCTGATCAAGACTT
TTCAGGAGAAGATGGATTCCTGATGGTTAGGATCTCTAGCTCATGTGGCC
GGGTGGGAGGCGCATTTTTCGCACGATCTACTGCAGAACATTTTTTTCCC
TGGATTGAACCTGTGCTAAATAGATTCTCTGTTCTGTTGTGTGCAGATCC
TGCACAATATGTCATAACGTCAGATTACGATCTGGAGTATCTAGGTCGTG
ATCTGTGGGAGTTGAGTTTGAAAAAAAAAATGCGATGAAAAACGATGGCA
GAACTCGTGACATAAACCCCCCGTGATGTGTTTGTTGAAAACGTAACAGA
CTTATTGATATTTAATAAATGTCAGAAAGCGTTTTTGTTTCGTTCGTTCG
TTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGCT
CGCTCGTCCGTTTGGGACGACCCTCGGCTGGCCAGGTATTGCTGTTATTG
ATAGTCGCGCGCGATGATAGTTCGCGGAGTTCTGCGTATTTGTATTTTCT
GACTGGCGCGTAAGGACTGCACTCCCGTTGTGTACTACTTTAAACGCTTC
GAACTTACCGTACTTACTGTCATATTTTGGTTTGTGTGAAGTGCAGTACG
AAGTTTTACTGGCATGTTTTTTTTATGAATACTACGAGTATTCATAAGTC
GTCAGTGAGCTTAGTTCGCCTGACAACTGGTGACCAGCCGAAGTCCAGCT
AACCCACGGCCTCAACGAGTAGAGATACGTACATATGTATGTGTATATAA
TGTTCCGTGGCATGGCCGGTTGCAACGTCCTTATCGAAAAAAAAAGGAGC
AAGGAAGCGTATGTGTGTGCTGCCCATGATATGTGTATGAGTGTGTGTCT
GTGTGTGCGTTTATTGTTGTGTGTGTATTATACGTCTGTGCTCATGATCT
GTGTGTGTTCGTGTATATGTAGCCTCCTACTTTTTTGTGTTAGCTCCTTC
CTTCCTTGCTTCCTCTCGTCCTTCCCCCCTTCCTCCCTCCCACCCTCTCT
CCCTCCCTTCCTTTTATTACGGGGGACCATAGTAAATAGGATCTACGGTA
CTCAGAAAGACCAACATATTTTATTATTTGTACTATTAATAACAATACTT
GGTCCTGTTAACTATGGTCCCCCGTAAATAGTACCTGGTACTGCAGTATC
ATCCCATAAAACTACCAAGGACTTTGCGCACGTTTCTAAAGTTATAACCC
TTGCTGCGCCTTTCTGTGTCGTTCTCCCCCCGTCTATGTTGCTGGCATGC
CTACGCCTATCTAATTGTCTCCCTGCCTGCCTGTTGTTTGTCTGTCCGTC
TATCTGTCTGCCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG
TCTGTCTGTCTGTCTGCCTGGCCTGCCTGGCCTACCCGGCCTACCTGGCC
TACCTGGCCTACCTGGCCTACCTGGCCTGCCTGGCCTACCTGGCCTACCT
GGCCTGCCTGGCCTGCCTGACGTGCTTTTCTGCTTGCAGTCCACGGAAGA
GGTGAACAAGCTTCTGGCCGCCTTTCGCGAGCTAAAGGCAATGCACGGGT
GGCTTTCCACGAGAAGGAAACGCAAGGAGAAGATCCCGACCACGCAGGAA
GAGTTGAGGGTCATGGCGGGAAATCCGAACGGCACGATGCTCGTGAACTT
CATGTGAGCCCTGTGTTGGTGTTCGTGTTGGTGGGAGGGGAGGGTGGGGA
AGGGTGATGTTAGTGGTGGTGGTGGTGGTAGCGGCGGCCGCTGTTGCGGT
ATCAGCGGTGATGGTGGTGGCGGTGGTGGTGATGGTGTAGTTGTCGGTGA
TATTGTTGCTGCGCTTGACAATGTTTTTGTGAGTTAATGGTGTTGCTGTG
ATTGTCTGGCATTTCCCAAGTGCCTTTTACTATTGCAGCCCATGGTCACA
CGTCGCAGGACGGGCTCTCACGTATCTCTGGAAAAAGAGACAAGAATTAT
CCCCTGGTATAATTTTTGAAACATACGAAGAAAAATTACCGACCAACCAA
CCAATGAACCAAGCAAGCACACAACAAAACGAACGGACAGACAAACAAGG
TCGACATAAACAAGGTCGACATTTCCTCCTGGTCCTCTCCTAGCCCTGTT
CCTAAACACCCCGGCGAACTTGCCTGTCCTTGCTGCCTTGTCAACGTGCG
TGCGTATTTATGATTTTTCTTGTGTCGTTTTTTTCAGGAGAGTCAAGAAA
AGCGGTTCCGGGCGACCGAGCTTCGGCTTTTAAGATAAGGTGGCGGCTAT
ATTTGGGAGAAGAAGAGTTGCTTGCGTTCAAGCAGCCAGCCGTGGTGCCA
GAGCGCTGACTTTGGATCAGTACGTACGTAGCTCTAGCTTGTCGTGTGTG
CCCTGCTGCTGGTACTGCTGCTGCTGCTGCCACCGCCGCCGCCGCTGCTG
GCTTCAGATGGCGTGGAAGGGGCTGTAGATGTTTAGTGGGCGTCCGATGA
TGAGGGAAGGAGGGCGAACGGAACCATTAACTCTCTTGGGACTTCATCAG
GGAAAAAATGACGACAATAAGTGACGGTTACAATGACGGTTACAGCGACG
GCCACTGCGTGATTTGGGGGGTGATATTATACAATGGTTGGTGTCCGAAT
TACAACGGTTGAATGCAAGGGAGTCGTACAGCACGGGGCGCGCAAACATG
ATCTCACCCGTACTACGTCTGGGCTCTCACGCTGCTCGTGGACCGTTGAT
GTCACTAAAGTTATCGTTGTTTCGGTTACTACCCCGCCCCTCCCAAAGGG
GTCTTAGCCCTTCCAGGACTGCAGTCCCGTTTGGGGGAGAAACTGCTTAG
AATTTGAGCGGTTTGTCCCCAAAACGGGACTACAGTTTTGCCCTAATAAG
GTTAAGAAGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10595:4828..8588-

>mRNA_M-pyrifera_M_contig10595.1279.1 ID=mRNA_M-pyrifera_M_contig10595.1279.1|Name=mRNA_M-pyrifera_M_contig10595.1279.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig10595:4828..8588- (Macrocystis pyrifera P11B4 male)
ATGGAGGAGCTGTCCTTGAAGGAGACGTTCGACCTCGACGACTTCGCTAA
GATTATAGAGATGGAGGAGCTGTCCTTGAAGGAGACGTTCGACCTCGACG
ACTTCGCTAAGATTATAGAGGAACCACTGGACAAGATCTCAGCGAAAATG
CCCTGGAACAAGAACAAGCAGGAACTGAAGGACATGAAGATGCAGAGACA
AGTGCTCAAGGCCCTAACCAAGGCGCAGAGAAAAAAGCCAGAGACCATCC
GCGCAGGTCACCGACAAGCAATCGCCGACAAGGCCGCATGCGAACCACTG
GACAAGATCTCAGCGAAAATGCCCTGGAACAAGAACAAGCAGGAACTGAA
GGACATGAAGATGCAGAGACAAGTGCTCAAGGCCCTAACCAAGGCGCAGA
GAAAAAAGCCAGAGACCATCCGCGCAGGTCACCGACAAGCAATCGCCGAC
AAGGCCGCATGCTCCACGGAAGAGGTGAACAAGCTTCTGGCCGCCTTTCG
CGAGCTAAAGGCAATGCACGGGTGGCTTTCCACGAGAAGGAAACGCAAGG
AGAAGATCCCGACCACGCAGGAAGAGTTGAGGGTCATGGCGGGAAATCCG
AACGGCACGATGCTCGTGAACTTCATTCCACGGAAGAGGTGAACAAGCTT
CTGGCCGCCTTTCGCGAGCTAAAGGCAATGCACGGGTGGCTTTCCACGAG
AAGGAAACGCAAGGAGAAGATCCCGACCACGCAGGAAGAGTTGAGGGTCA
TGGCGGGAAATCCGAACGGCACGATGCTCGTGAACTTCATGAGAGTCAAG
AAAAGCGGTTCCGGGCGACCGAGCTTCGGCTTTTAAGAGAGTCAAGAAAA
GCGGTTCCGGGCGACCGAGCTTCGGCTTTTAA
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