prot_M-pyrifera_M_contig10595.1279.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig10595.1279.1
Unique Nameprot_M-pyrifera_M_contig10595.1279.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length147
Homology
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BLAST of mRNA_M-pyrifera_M_contig10595.1279.1 vs. uniprot
Match: D8LNI7_ECTSI (SRP_SPB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNI7_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 3.380e-67
Identity = 108/146 (73.97%), Postives = 131/146 (89.73%), Query Frame = 0 
Query:    1 MEELSLKETFDLDDFAKIIEEPLDKISAKMPWNKNKQELKDMKMQRQVLKALTKAQRKKPETIRAGHRQAIADKAACSTEEVNKLLAAFRELKAMHGWLSTRRKRKEKIPTTQEELRVMAGNPNGTMLVNFMRVKKSGSGRPSFGF 146
            MEELSLKE+F+LDDFAKIIEEPLDK SAK+PWNK+++EL+ MKMQ++VL+ LT  QRK PE+IR GHRQ IAD+A  +TE+VNK LAA+RELKAMHGWLSTRRKRKE+IP+TQEEL VMA +P+GTML+NFM+VK+S SG+PSF F
Sbjct:   90 MEELSLKESFNLDDFAKIIEEPLDKFSAKLPWNKSREELQAMKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVTTEDVNKALAAYRELKAMHGWLSTRRKRKERIPSTQEELHVMATDPSGTMLMNFMKVKRSNSGKPSFAF 235
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10595.1279.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNI7_ECTSI3.380e-6773.97SRP_SPB domain-containing protein n=2 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 9..119
e-value: 1.6E-10
score: 42.7
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 7..99
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 10..95
e-value: 1.7E-7
score: 31.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10595contigM-pyrifera_M_contig10595:5456..8567 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10595.1279.1mRNA_M-pyrifera_M_contig10595.1279.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig10595 4828..8588 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig10595.1279.1 ID=prot_M-pyrifera_M_contig10595.1279.1|Name=mRNA_M-pyrifera_M_contig10595.1279.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
MEELSLKETFDLDDFAKIIEEPLDKISAKMPWNKNKQELKDMKMQRQVLK
ALTKAQRKKPETIRAGHRQAIADKAACSTEEVNKLLAAFRELKAMHGWLS
TRRKRKEKIPTTQEELRVMAGNPNGTMLVNFMRVKKSGSGRPSFGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036891Signal_recog_part_SRP54_M_sf
IPR004125Signal_recog_particle_SRP54_M