mRNA_M-pyrifera_M_contig10056.127.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10056.127.1
Unique NamemRNA_M-pyrifera_M_contig10056.127.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10056.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10056contigM-pyrifera_M_contig10056:8719..9175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.473143-CDS-M-pyrifera_M_contig10056:8718..90661622815502.473143-CDS-M-pyrifera_M_contig10056:8718..9066Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10056 8719..9066 +
1692277440.5448196-CDS-M-pyrifera_M_contig10056:8718..90661692277440.5448196-CDS-M-pyrifera_M_contig10056:8718..9066Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10056 8719..9066 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.4868484-UTR-M-pyrifera_M_contig10056:9066..91751622815502.4868484-UTR-M-pyrifera_M_contig10056:9066..9175Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10056 9067..9175 +
1692277440.5554118-UTR-M-pyrifera_M_contig10056:9066..91751692277440.5554118-UTR-M-pyrifera_M_contig10056:9066..9175Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10056 9067..9175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10056.127.1prot_M-pyrifera_M_contig10056.127.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10056 8719..9066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10056.127.1

>prot_M-pyrifera_M_contig10056.127.1 ID=prot_M-pyrifera_M_contig10056.127.1|Name=mRNA_M-pyrifera_M_contig10056.127.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
TIKQKKRIQAKRWELFTVDQTTKQQPSRRHDAFLCVEHPPTRRAILEAER
SRHQIRCANSTKSTTARHASRLRNTEARPQRPQRRALEKTLEFGHPRKKN
AKKHATRTSKKQQQK*
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mRNA from alignment at M-pyrifera_M_contig10056:8719..9175+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10056.127.1 ID=mRNA_M-pyrifera_M_contig10056.127.1|Name=mRNA_M-pyrifera_M_contig10056.127.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=457bp|location=Sequence derived from alignment at M-pyrifera_M_contig10056:8719..9175+ (Macrocystis pyrifera P11B4 male)
ACTATCAAGCAAAAAAAAAGGATTCAGGCAAAGAGGTGGGAACTTTTTAC
TGTTGATCAGACTACGAAACAGCAACCCTCCAGAAGACACGACGCCTTCC
TGTGTGTGGAACACCCTCCGACGCGCCGAGCTATTTTAGAGGCGGAGCGA
TCTCGGCATCAAATTCGCTGCGCAAACTCAACTAAATCAACAACAGCTCG
CCACGCATCAAGGCTCCGAAACACCGAGGCGAGGCCACAACGTCCACAGA
GGAGAGCGCTTGAAAAAACCCTAGAATTCGGACACCCACGGAAAAAAAAT
GCCAAAAAACACGCAACACGAACAAGCAAGAAACAGCAACAAAAATGACA
GCCCTGCAAGATCGCAAAACTCACCGTCACTCATACGTATTGTACGCATC
AAGTTTGTGCGCATGGATCAGGCTCGTGCGCAAAACCAAAAGCCCGCGAG
GGAAAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10056:8719..9175+

>mRNA_M-pyrifera_M_contig10056.127.1 ID=mRNA_M-pyrifera_M_contig10056.127.1|Name=mRNA_M-pyrifera_M_contig10056.127.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig10056:8719..9175+ (Macrocystis pyrifera P11B4 male)
ACTATCAAGCAAAAAAAAAGGATTCAGGCAAAGAGGTGGGAACTTTTTAC
TGTTGATCAGACTACGAAACAGCAACCCTCCAGAAGACACGACGCCTTCC
TGTGTGTGGAACACCCTCCGACGCGCCGAGCTATTTTAGAGGCGGAGCGA
TCTCGGCATCAAATTCGCTGCGCAAACTCAACTAAATCAACAACAGCTCG
CCACGCATCAAGGCTCCGAAACACCGAGGCGAGGCCACAACGTCCACAGA
GGAGAGCGCTTGAAAAAACCCTAGAATTCGGACACCCACGGAAAAAAAAT
GCCAAAAAACACGCAACACGAACAAGCAAGAAACAGCAACAAAAATGAAC
TATCAAGCAAAAAAAAAGGATTCAGGCAAAGAGGTGGGAACTTTTTACTG
TTGATCAGACTACGAAACAGCAACCCTCCAGAAGACACGACGCCTTCCTG
TGTGTGGAACACCCTCCGACGCGCCGAGCTATTTTAGAGGCGGAGCGATC
TCGGCATCAAATTCGCTGCGCAAACTCAACTAAATCAACAACAGCTCGCC
ACGCATCAAGGCTCCGAAACACCGAGGCGAGGCCACAACGTCCACAGAGG
AGAGCGCTTGAAAAAACCCTAGAATTCGGACACCCACGGAAAAAAAATGC
CAAAAAACACGCAACACGAACAAGCAAGAAACAGCAACAAAAATGA
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