mRNA_M-pyrifera_M_contig10055.124.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig10055.124.1 vs. uniprot
Match: D7FQU6_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQU6_ECTSI) HSP 1 Score: 372 bits (955), Expect = 8.860e-107 Identity = 412/1009 (40.83%), Postives = 527/1009 (52.23%), Query Frame = 1 Query: 1 ASQLKAAQAGFFVRASRCVSSSVGWESADEVLSRAMDDTKIPSHIPSPCGSPTPPPSSRV--PLAAVVAAVRNADEGIEDPEGRSGTAVATRSISFNAGSTGINGRPVFTGKGRKTGDGDALDDHGRMQSEMKRRRSSGWFRRLTSSFQSNRERSASDELLERAESPLPEVVSYGDDSDAEDSARGDTPPSEKQSLEQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSGPRGVGGGYVGPVAVGPEAVTEQVAGLGEES--GXXXXXXXXXTLVSGRGXXRMETDEEESDDETGSYTTEGFGSDDAGDLWEGGRATGL--LGREG---GDGGRGN-----WAVEGDDGPSDAGGGSERTGAAPLERHLAGIENGGSGFAG-EVVEGAAP---AAALEVEVGSPPRNGGKRGEAGIDDGDEGGRDSXXXXXXXXS-KGGY-RVSDSRKFDSGDRKVSNGGSAAAEKAQSARLLSPPVIVTPMSPR-ASAAHSMGPPAPHSPVPPPSLPDAVLNSPLPNVSSERRSLFSPP-KPNSSPAISEASS-KESPRAWRMSWWARASDRHQ-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAARARRPGDEFAPAFSGGDAPAPAVVDRDGGAGKTLRGNGVEAAAXXXXX--AAERRTRDRLRRAGRLGNPWLSADTLVNAETRPLEAACRFLDVAGLARATGVCRSWGKRLGGEAGAREWVRCVRLADGVPEGCRAGFYLHVLYDQPSWVPKAHRSSSRVRPRPGVYEECLKKADAEEELSMTTSKKLQMIAEDMKEDGY-TPLLSADGPS-HEPSSALRS--GRAGRDNVEPSSAPRSYKWLKEIETDVLRTCPAD------AVGEFDGIIWRNSTST-------ITDRDSSPRRTPSTSPIKNNGSSLSGXXXXXXXXXXXXXXXAAVEAQXXXXXXXXAAGGVEGNGNIPE------AFWEGGGEEVVSRRFSVAGGGTREKLRRVLRAFAVYNRRVSYCQ 2880 AS LKAAQAGFFVRASRCVSSSV WES D+VLSRA D + + + + PP +S V P A VV+ + G E+ +G + + A ++ STGI+ R GK +K GD D L + KRRR+SGWF+RL SSFQ+NR RSAS+ELLE P P + D++D DS D +S+ ++ G + G +A A + AG + XXXXXXXX XX ++D ETGS TTEGFGSDDAGDLW+G R+T + L R D G + W V P G E G + AG +G G E++ GA P A E G R+G + +D ++ S KGG RV + R G V + G + AE A++ + SP + T SP + S PP+ +P P + + PLP V+ E+R SP K +SPAIS+ SS KESPRAWR+SWWA+ASDRH PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A G FAP+ + GDAPA V+D GG K +++AA A+ERR+R R + R PWLS D L + +TR LEAA +LDV LA+A VCR+W + L GE G + W+RCVRLADGVPE RA FYLH+LYDQP WV KAH S S RPRPGVY+ECL+KA+A++E ++ +K++Q I E+ + +G +P A + S LR+ G D P+ PR +KWL+EIETDVLRTCP D AV EFD ++ +N+ + I D + P S + SS AV + V+G + P A GG +V +FS GGG R+KLRRVLRAFAVYNRRVSYCQ Sbjct: 271 ASSLKAAQAGFFVRASRCVSSSVVWESPDDVLSRATGDLQNTTRSTAE-DTRKPPAASHVAKPKAVVVSTDAAFEGGKEERDGGAAGSQAKSAVF----STGIHDRDTVKGKWKKGGDYDGLRND-----SSKRRRNSGWFKRLASSFQTNRPRSASEELLEEERMPSP----FNDNADEYDSGGDDDKKLCLRSIPRATASSSAKSPKGKLLFGGEDFW----------DGNSSLRNGNTAELATEAAATSSPDAGSDASATGAVXXXXXXXXXXXXXXXXXXXXXXXXDTDYETGSNTTEGFGSDDAGDLWDGRRSTLMAPLDRTSFMPNDNGHKSEEEEEWHVP----PEXESNGDEPEGGDSCGKGAAGSPSGAEEEEGVELMPGAHPEVGVAETSKEEGGASRSGIISPASDVDGTVPPAAENDGAPESARSVKGGRDRVDEERDGGRGGGLVKDSGDSVAEGAKAEDISSP--VPTRRSPYLVHCSPSRAPPSILPVLPEPGPKEDGVEDPLPPVAIEQRRTPSPLCKITASPAISDGSSCKESPRAWRLSWWAKASDRHPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSA---GGAFAPSRNAGDAPA--VMD--GGEKKASLEEALKSAATETVADAASERRSRRRWTQRRR-EKPWLSKDKLADPQTRALEAASEYLDVVALAKAVVVCRAWREPLAGEEGRQRWMRCVRLADGVPENRRAMFYLHILYDQPCWVQKAHGSKSSERPRPGVYQECLEKAEADQEETVA-AKEMQRILEEEERNGRASPSAGARAAALFRDSGGLRAVAGGCDGDGDTPAPPPRCHKWLEEIETDVLRTCPGDDAAGEDAVNEFDSVLSKNTAAAAASDGGEIGDTGTPPANESSRVRFSVSFSSFGSSNSSSTVKAVANRSSGAVAEDLGSDGRRSSTAPVQGRDSAPTEGEEVVAGGRGGSGAIVRNKFSATGGGMRDKLRRVLRAFAVYNRRVSYCQ 1240 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10055.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig10055.124.1 >prot_M-pyrifera_M_contig10055.124.1 ID=prot_M-pyrifera_M_contig10055.124.1|Name=mRNA_M-pyrifera_M_contig10055.124.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=960bp ASQLKAAQAGFFVRASRCVSSSVGWESADEVLSRAMDDTKIPSHIPSPCGback to top mRNA from alignment at M-pyrifera_M_contig10055:3977..9429+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig10055.124.1 ID=mRNA_M-pyrifera_M_contig10055.124.1|Name=mRNA_M-pyrifera_M_contig10055.124.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5453bp|location=Sequence derived from alignment at M-pyrifera_M_contig10055:3977..9429+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig10055:3977..9429+ >mRNA_M-pyrifera_M_contig10055.124.1 ID=mRNA_M-pyrifera_M_contig10055.124.1|Name=mRNA_M-pyrifera_M_contig10055.124.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=5760bp|location=Sequence derived from alignment at M-pyrifera_M_contig10055:3977..9429+ (Macrocystis pyrifera P11B4 male)back to top |