mRNA_M-pyrifera_M_contig100543.122.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig100543.122.1 vs. uniprot
Match: A0A3D5D9J2_9GAMM (tRNA pseudouridine synthase A n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5D9J2_9GAMM) HSP 1 Score: 275 bits (702), Expect = 4.650e-90 Identity = 132/219 (60.27%), Postives = 165/219 (75.34%), Query Frame = 1 Query: 10 MRIALGLEYDGTGFAGWQRQDNGRTVQAAVERALSKIANCPVFTQCAGRTDAGVHACAQVVHFDCAAERPERAWVLGTNAALPRDISIQWARTVDHEFHARFTAEARAYRYVICNRATRPGLLTGKVTHIHTLLDAVAMDAAARRLLGERDFSSFRAAGCQARHAVREVQSIAVRRDGEFVILTITANAFLQHMVRNIVGTLLPVGQGRREPDWVAQVL 666 M+ A G+EYDG+ F GWQRQ +GRTVQA +E+ALS +A+ + T CAGRTDAGVHA QV+H D +R R+WVLG N+ LP DIS+QWAR VD EFHARF+AE R YRY+ICNR RPGL KV+ ++ LDA M AAR L+G DF+SFRA+GCQ+ H++R+V I +RR G+ + + I ANAFLQHMVRN+VGTLL VG GR+ P+WV QVL Sbjct: 1 MKFAFGVEYDGSNFVGWQRQTSGRTVQACMEKALSTVADESIRTYCAGRTDAGVHATGQVIHIDTTVKRTSRSWVLGANSNLPNDISVQWAREVDTEFHARFSAEGRTYRYIICNRMARPGLWKNKVSFVYKPLDAGLMLQAARCLVGYHDFTSFRASGCQSLHSMRKVNRIDIRRSGDLLTIVIEANAFLQHMVRNVVGTLLCVGDGRKPPEWVQQVL 219
BLAST of mRNA_M-pyrifera_M_contig100543.122.1 vs. uniprot
Match: H1G5Z6_9GAMM (tRNA pseudouridine synthase A n=5 Tax=Ectothiorhodospira TaxID=1051 RepID=H1G5Z6_9GAMM) HSP 1 Score: 274 bits (701), Expect = 6.380e-90 Identity = 134/223 (60.09%), Postives = 164/223 (73.54%), Query Frame = 1 Query: 1 DVAMRIALGLEYDGTGFAGWQRQDNGRTVQAAVERALSKIANCPVFTQCAGRTDAGVHACAQVVHFDCAAERPERAWVLGTNAALPRDISIQWARTVDHEFHARFTAEARAYRYVICNRATRPGLLTGKVTHIHTLLDAVAMDAAARRLLGERDFSSFRAAGCQARHAVREVQSIAVRRDGEFVILTITANAFLQHMVRNIVGTLLPVGQGRREPDWVAQVLE 669 D R+A+GLEYDG+GF GWQ+Q +GRT+Q VERAL+K+A+ PV CAGRTDAGVHA Q+VHFD A+RP AW+LG N+ L +IS+QW R V +FHARF+A R YRYV NR RP +L G+VT H L A M AA+ LLGE DFSSFRA GCQARH +REVQS++V RDG+F+ L I ANAFL HMVRNI G L+ VG+G R DW+A++ E Sbjct: 3 DTPRRLAIGLEYDGSGFRGWQQQKDGRTIQPLVERALAKVADHPVQVTCAGRTDAGVHATCQIVHFDTTADRPPHAWLLGGNSNLTPEISLQWVRPVAPDFHARFSARWRRYRYVFLNRLARPAVLRGRVTWYHRPLAAEPMHEAAQHLLGEHDFSSFRALGCQARHPIREVQSVSVTRDGDFIYLDIRANAFLHHMVRNIAGALMCVGRGERPSDWLAELRE 225
BLAST of mRNA_M-pyrifera_M_contig100543.122.1 vs. uniprot
Match: A0A7C1U1H6_9GAMM (tRNA pseudouridine synthase A n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A7C1U1H6_9GAMM) HSP 1 Score: 273 bits (699), Expect = 1.020e-89 Identity = 137/219 (62.56%), Postives = 161/219 (73.52%), Query Frame = 1 Query: 10 MRIALGLEYDGTGFAGWQRQDNGRTVQAAVERALSKIANCPVFTQCAGRTDAGVHACAQVVHFDCAAERPERAWVLGTNAALPRDISIQWARTVDHEFHARFTAEARAYRYVICNRATRPGLLTGKVTHIHTLLDAVAMDAAARRLLGERDFSSFRAAGCQARHAVREVQSIAVRRDGEFVILTITANAFLQHMVRNIVGTLLPVGQGRREPDWVAQVL 666 MRIALG+EYDG+ F GWQ Q + +VQ A++ ALSK+A+ PV CAGRTD+GVHA AQVVHFD AERP AWVLG NA LP +S+ WA+ VD +FHARF A AR+YRYVI NR RP +L +V +H LD AM AA+ LLGE DFSSFRA CQARHAVR V + V R GEF+ + I ANAFL HMVRNI GTL+ VG+G REP WVA+VL Sbjct: 1 MRIALGIEYDGSAFCGWQTQSHAPSVQDALQAALSKVADHPVKVVCAGRTDSGVHATAQVVHFDTRAERPLHAWVLGGNANLPDSVSVTWAQAVDQDFHARFKATARSYRYVILNRKVRPAVLRKRVCWMHHALDEAAMQTAAQALLGEHDFSSFRALACQARHAVRRVHRLDVSRSGEFIYIDIEANAFLHHMVRNIAGTLMAVGRGDREPGWVAEVL 219
BLAST of mRNA_M-pyrifera_M_contig100543.122.1 vs. uniprot
Match: A0A3N1Y1Z6_9GAMM (tRNA pseudouridine synthase A n=1 Tax=Inmirania thermothiophila TaxID=1750597 RepID=A0A3N1Y1Z6_9GAMM) HSP 1 Score: 270 bits (691), Expect = 1.780e-88 Identity = 133/220 (60.45%), Postives = 157/220 (71.36%), Query Frame = 1 Query: 10 MRIALGLEYDGTGFAGWQRQDNGRTVQAAVERALSKIANCPVFTQCAGRTDAGVHACAQVVHFDCAAERPERAWVLGTNAALPRDISIQWARTVDHEFHARFTAEARAYRYVICNRATRPGLLTGKVTHIHTLLDAVAMDAAARRLLGERDFSSFRAAGCQARHAVREVQSIAVRRDGEFVILTITANAFLQHMVRNIVGTLLPVGQGRREPDWVAQVLE 669 MR+ALG+EYDG+ F GWQ QD RTVQA +ERALS +A+ PV CAGRTDAGVHA AQVVHFD A R R+WVLG N LP D+ ++WAR V FHARF+A AR YRYVI NR RP L G+V +H LDA M AA L+GE DFS+FRA CQARH VRE++ + VRR G+ VIL ANAFL HMVRNI G L+ +G+G+R P W +VLE Sbjct: 1 MRVALGVEYDGSAFRGWQAQDGERTVQAELERALSVVADAPVRVVCAGRTDAGVHATAQVVHFDTEARRSPRSWVLGANVNLPPDVGVRWAREVPEAFHARFSATARRYRYVILNRMDRPALARGRVAWVHRPLDAARMAEAAAHLVGEHDFSAFRAVACQARHPVRELRELTVRRAGDLVILEAEANAFLHHMVRNIAGVLIDIGRGKRPPSWAREVLE 220
BLAST of mRNA_M-pyrifera_M_contig100543.122.1 vs. uniprot
Match: UPI001BBD53F5 (tRNA pseudouridine(38-40) synthase TruA n=1 Tax=Sulfuritalea sp. TaxID=2480090 RepID=UPI001BBD53F5) HSP 1 Score: 264 bits (675), Expect = 5.280e-86 Identity = 131/219 (59.82%), Postives = 159/219 (72.60%), Query Frame = 1 Query: 10 MRIALGLEYDGTGFAGWQRQDNGRTVQAAVERALSKIANCPVFTQCAGRTDAGVHACAQVVHFDCAAERPERAWVLGTNAALPRDISIQWARTVDHEFHARFTAEARAYRYVICNRATRPGLLTGKVTHIHTLLDAVAMDAAARRLLGERDFSSFRAAGCQARHAVREVQSIAVRRDGEFVILTITANAFLQHMVRNIVGTLLPVGQGRREPDWVAQVL 666 MR+ALGLEYDG GF GWQ Q G TVQ A+ERAL+ IA PV T CAGRTDAGVHA AQVVHFD AAERP AWV G NA LP ++++WA V EFHARF A AR+YRY++ NR RPGLL GKV H LD AM AAA+ L+GERDFS+FR++ CQA+ V+ + + + R G+ ++L ANAFL HMVRN+VG L+ VG GR P W+A++L Sbjct: 1 MRVALGLEYDGAGFFGWQSQPGGNTVQDALERALAVIAGAPVATVCAGRTDAGVHATAQVVHFDVAAERPMSAWVRGVNAHLPASVAVRWAMPVASEFHARFAARARSYRYLLLNRRERPGLLNGKVGWCHRPLDVEAMQAAAQSLIGERDFSAFRSSECQAKSPVKILHRLDIARQGDLIVLDCCANAFLHHMVRNLVGALVYVGTGRESPAWLARLL 219
BLAST of mRNA_M-pyrifera_M_contig100543.122.1 vs. uniprot
Match: A0A7C5XSG8_9GAMM (tRNA pseudouridine synthase A n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C5XSG8_9GAMM) HSP 1 Score: 263 bits (673), Expect = 1.210e-85 Identity = 134/220 (60.91%), Postives = 162/220 (73.64%), Query Frame = 1 Query: 10 MRIALGLEYDGTGFAGWQRQDNGRTVQAAVERALSKIANCPVFTQCAGRTDAGVHACAQVVHFDCAAERPERAWVLGTNAALPRDISIQWARTVDHEFHARFTAEARAYRYVICNRATRPGLLTGKVTHIH-TLLDAVAMDAAARRLLGERDFSSFRAAGCQARHAVREVQSIAVRRDGEFVILTITANAFLQHMVRNIVGTLLPVGQGRREPDWVAQVL 666 MRIA+G+EYDG+GFAGWQRQ + R+VQA VE AL+++A PV T+CAGRTDAGVHAC QVVHFD A RP+RAWVLGTNA LP D++++WAR V+ F ARF+A AR YRY+I RP LL + H LD M AAR LLGE DFS+FRAAGCQARHAVR V + V R G+ V L I ANAFL HMVR +VG+LL VG+G R +W+ ++L Sbjct: 1 MRIAIGIEYDGSGFAGWQRQAHARSVQACVEAALARVAGHPVATRCAGRTDAGVHACGQVVHFDTEAVRPDRAWVLGTNAHLPGDVAVRWARAVEEGFDARFSATARVYRYLIAEGPARPALLRHRAAWHHGPRLDEARMAEAARALLGEHDFSAFRAAGCQARHAVRAVSRLEVGRAGDVVWLEIEANAFLHHMVRIVVGSLLLVGRGERPVEWIGELL 220
BLAST of mRNA_M-pyrifera_M_contig100543.122.1 vs. uniprot
Match: UPI0004113801 (tRNA pseudouridine(38-40) synthase TruA n=1 Tax=Aestuariibacter salexigens TaxID=226010 RepID=UPI0004113801) HSP 1 Score: 263 bits (672), Expect = 1.370e-85 Identity = 130/219 (59.36%), Postives = 160/219 (73.06%), Query Frame = 1 Query: 10 MRIALGLEYDGTGFAGWQRQDNGRTVQAAVERALSKIANCPVFTQCAGRTDAGVHACAQVVHFDCAAERPERAWVLGTNAALPRDISIQWARTVDHEFHARFTAEARAYRYVICNRATRPGLLTGKVTHIHTLLDAVAMDAAARRLLGERDFSSFRAAGCQARHAVREVQSIAVRRDGEFVILTITANAFLQHMVRNIVGTLLPVGQGRREPDWVAQVL 666 MRIALG+EYDG F GWQRQ ++Q +E ALSK+AN P+ QCAGRTDAGVHA QVVHFDC ERPERAW LG NA LP I+I+WAR VD EFHARF+A AR YRY+I N R G+LT VTH+H LDA M AA+ LLGE+DF+SFRAA CQ++ R V +++V R ++V++ I ANAFL HMVRNI G+L+ +G G R W+A++L Sbjct: 1 MRIALGVEYDGAAFYGWQRQREVSSIQQHIESALSKVANTPIEVQCAGRTDAGVHATYQVVHFDCPVERPERAWTLGMNANLPDSIAIKWARQVDDEFHARFSATARRYRYLIYNNKMRSGILTRGVTHVHRHLDADKMHRAAQCLLGEQDFTSFRAALCQSKTPFRNVMAVSVFRQAQYVVIDIQANAFLHHMVRNITGSLIEIGCGHRPESWLAELL 219
BLAST of mRNA_M-pyrifera_M_contig100543.122.1 vs. uniprot
Match: A0A1R3W4Z9_9GAMM (tRNA pseudouridine synthase A n=2 Tax=Ectothiorhodosinus mongolicus TaxID=233100 RepID=A0A1R3W4Z9_9GAMM) HSP 1 Score: 263 bits (673), Expect = 1.380e-85 Identity = 132/222 (59.46%), Postives = 164/222 (73.87%), Query Frame = 1 Query: 1 DVAMRIALGLEYDGTGFAGWQRQDNGRTVQAAVERALSKIANCPVFTQCAGRTDAGVHACAQVVHFDCAAERPERAWVLGTNAALPRDISIQWARTVDHEFHARFTAEARAYRYVICNRATRPGLLTGKVTHIHTLLDAVAMDAAARRLLGERDFSSFRAAGCQARHAVREVQSIAVRRDGEFVILTITANAFLQHMVRNIVGTLLPVGQGRREPDWVAQVL 666 DV R A+GLEYDG+GF GWQ+Q RT+Q VE ALS++A+ P+ CAGRTDAGVHA AQV+HFD A R RAW+LGTN+ L ++S+QW R + +FHARF+A RAYRY+I NR TRP +L +VT IH LDA AM AA+ LLGE DF+SFRA GCQARH REVQ+++V R GE + L I ANAFL HMVRNI G+L+ VG+G + W++QVL Sbjct: 3 DVVQRYAIGLEYDGSGFRGWQKQREARTLQPLVEEALSRVADEPIEVVCAGRTDAGVHAMAQVIHFDTRAVRDPRAWLLGTNSHLGSELSVQWVRPMPADFHARFSARWRAYRYLILNRLTRPAVLRRRVTWIHRPLDAEAMHLAAQCLLGEHDFTSFRALGCQARHPRREVQAVSVYRRGESIYLDIRANAFLHHMVRNIAGSLMCVGRGEQPAHWLSQVL 224
BLAST of mRNA_M-pyrifera_M_contig100543.122.1 vs. uniprot
Match: A0A7Y1TFB9_9GAMM (tRNA pseudouridine synthase A n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y1TFB9_9GAMM) HSP 1 Score: 262 bits (670), Expect = 2.840e-85 Identity = 131/220 (59.55%), Postives = 162/220 (73.64%), Query Frame = 1 Query: 10 MRIALGLEYDGTGFAGWQRQDNGRTVQAAVERALSKIANCPVFTQCAGRTDAGVHACAQVVHFDCAAERPERAWVLGTNAALPRDISIQWARTVDHEFHARFTAEARAYRYVICNRATRPGLLTGKVTHIHTLLDAVAMDAAARRLLGERDFSSFRAAGCQARHAVREVQSIAVRRDGEFVILTITANAFLQHMVRNIVGTLLPVGQGRREPDWVAQVLE 669 MRIALG+EYDGTG+ GWQRQ G VQ +E ALS IAN V CAGRTD GVHA QVVHFD ++ER R W+LG N++LP DIS+ W + VD +FHARF+A AR+YRY I NR R L + ++ LDA AM AAAR+LLG DFS+FRAAGCQA A RE+ IAV+R+G+++ LT+TANAFLQHMVRNI GTL+ +G G R+ +WV +VL+ Sbjct: 1 MRIALGIEYDGTGYNGWQRQKTGLGVQQRLEEALSLIANETVEVVCAGRTDTGVHATGQVVHFDTSSERSRRGWLLGANSSLPNDISVTWVKPVDDDFHARFSATARSYRYRIINRLERSALYRERAWWVYEPLDANAMHAAARQLLGRHDFSAFRAAGCQASTAEREISRIAVQREGDWITLTVTANAFLQHMVRNIAGTLVAIGLGERDFEWVGEVLQ 220
BLAST of mRNA_M-pyrifera_M_contig100543.122.1 vs. uniprot
Match: A0A3M1UM16_9GAMM (tRNA pseudouridine synthase A n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3M1UM16_9GAMM) HSP 1 Score: 262 bits (669), Expect = 3.650e-85 Identity = 133/219 (60.73%), Postives = 156/219 (71.23%), Query Frame = 1 Query: 10 MRIALGLEYDGTGFAGWQRQDNGRTVQAAVERALSKIANCPVFTQCAGRTDAGVHACAQVVHFDCAAERPERAWVLGTNAALPRDISIQWARTVDHEFHARFTAEARAYRYVICNRATRPGLLTGKVTHIHTLLDAVAMDAAARRLLGERDFSSFRAAGCQARHAVREVQSIAVRRDGEFVILTITANAFLQHMVRNIVGTLLPVGQGRREPDWVAQVL 666 MRIALG+EYDGT F GWQ QD+ R+VQ VE ALSK+A+ PV T CAGRTD GVHA AQVVHFD A RPE AWV+G N LPR +SI+WAR V +FHAR++A AR YRY+I NR RP LL +V LDA M A LLGE DFS+FRAAGCQA+H VR ++ + V R GE + + +TANAFL HMVRNI GTL+ VG+G DWV VL Sbjct: 1 MRIALGIEYDGTVFCGWQYQDHCRSVQQVVEAALSKVADHPVRTVCAGRTDTGVHATAQVVHFDTPAVRPEHAWVMGGNVHLPRAVSIRWARVVPEDFHARYSATARTYRYLILNRGQRPALLRRRVCWEFRPLDAERMQEAGALLLGEHDFSAFRAAGCQAKHPVRRIERLEVARHGELIRIDVTANAFLHHMVRNIAGTLMKVGRGEAPVDWVGAVL 219 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100543.122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig100543.122.1 >prot_M-pyrifera_M_contig100543.122.1 ID=prot_M-pyrifera_M_contig100543.122.1|Name=mRNA_M-pyrifera_M_contig100543.122.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=220bp MRIALGLEYDGTGFAGWQRQDNGRTVQAAVERALSKIANCPVFTQCAGRTback to top mRNA from alignment at M-pyrifera_M_contig100543:9..677+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig100543.122.1 ID=mRNA_M-pyrifera_M_contig100543.122.1|Name=mRNA_M-pyrifera_M_contig100543.122.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=669bp|location=Sequence derived from alignment at M-pyrifera_M_contig100543:9..677+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig100543:9..677+ >mRNA_M-pyrifera_M_contig100543.122.1 ID=mRNA_M-pyrifera_M_contig100543.122.1|Name=mRNA_M-pyrifera_M_contig100543.122.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1320bp|location=Sequence derived from alignment at M-pyrifera_M_contig100543:9..677+ (Macrocystis pyrifera P11B4 male)back to top |