mRNA_M-pyrifera_M_contig100536.119.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100536.119.1
Unique NamemRNA_M-pyrifera_M_contig100536.119.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100536.119.1 vs. uniprot
Match: A0A7K4RGV7_9TYRA (CFA47 protein (Fragment) n=9 Tax=Passeriformes TaxID=9126 RepID=A0A7K4RGV7_9TYRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.930e-9
Identity = 37/120 (30.83%), Postives = 54/120 (45.00%), Query Frame = 1 
Query:    1 VPLILQPKGPGVYRTTVALLSDRETRVYEIRVAVTPQAIQKEMRMRVSAGHSVVQNLPVINSSPYPWSLSTEIEVLEGRHGPGFHDASDTSRTQHHSFSLPRHLSAAPGSTALVPLTFAP 360
            +P+   P   G YR  + L S  + RVYE+   V+   +  E+     A  SV+QN+P+ N+S   W L  ++E      G GF+               P  ++   G TAL PLTF P
Sbjct:   11 LPIKFIPPDAGSYRCQILLKSPCDVRVYEVECVVSKDQVDAELEFLTPAYQSVIQNIPISNTSSVDWKLEAKLE------GEGFYG--------------PPVINVGVGETALYPLTFNP 110
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BLAST of mRNA_M-pyrifera_M_contig100536.119.1 vs. uniprot
Match: UPI000FFD8B8B (cilia- and flagella-associated protein 47 n=1 Tax=Empidonax traillii TaxID=164674 RepID=UPI000FFD8B8B)

HSP 1 Score: 59.3 bits (142), Expect = 8.870e-8
Identity = 38/120 (31.67%), Postives = 54/120 (45.00%), Query Frame = 1 
Query:    1 VPLILQPKGPGVYRTTVALLSDRETRVYEIRVAVTPQAIQKEMRMRVSAGHSVVQNLPVINSSPYPWSLSTEIEVLEGRHGPGFHDASDTSRTQHHSFSLPRHLSAAPGSTALVPLTFAP 360
            +P+   P   G YR  + L S  + RVYEI   V+   +  E+     A  SV+QN+P+ N+S   W L  ++E      G GF+               P  ++   G TAL PLTF P
Sbjct: 2312 LPIKFIPPDAGSYRCQILLKSPSDVRVYEIECVVSKGQLDAELEFLTPAYQSVIQNIPISNTSSVDWKLEAKLE------GEGFYG--------------PPVINVGVGETALYPLTFNP 2411
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BLAST of mRNA_M-pyrifera_M_contig100536.119.1 vs. uniprot
Match: A0A7R5KET9_9PASS (cilia- and flagella-associated protein 47 n=16 Tax=Pipridae TaxID=114313 RepID=A0A7R5KET9_9PASS)

HSP 1 Score: 58.5 bits (140), Expect = 1.650e-7
Identity = 37/120 (30.83%), Postives = 54/120 (45.00%), Query Frame = 1 
Query:    1 VPLILQPKGPGVYRTTVALLSDRETRVYEIRVAVTPQAIQKEMRMRVSAGHSVVQNLPVINSSPYPWSLSTEIEVLEGRHGPGFHDASDTSRTQHHSFSLPRHLSAAPGSTALVPLTFAP 360
            +P+   P   G Y   + L S  + RVYEI   V+   ++ E+     A  SV+QN+P+ N+S   W L  ++E      G GF+               P  ++   G TAL PLTF P
Sbjct: 2281 LPIKFTPPDAGSYHCQILLKSPCDVRVYEIECVVSKDRVEAELEFLTPAYQSVIQNIPISNTSCVDWKLEAKLE------GEGFYG--------------PPVINVGVGETALYPLTFNP 2380
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BLAST of mRNA_M-pyrifera_M_contig100536.119.1 vs. uniprot
Match: A0A5J4TC28_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4TC28_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 5.650e-6
Identity = 23/82 (28.05%), Postives = 42/82 (51.22%), Query Frame = 1 
Query:    4 PLILQPKGPGVYRTTVALLSDRETRVYEIRVAVTPQAIQKEMRMRVSAGHSVVQNLPVINSSPYPWSLSTEIEVLEGRHGPG 249
            P+   PKGPG Y   + L S  + RV++++       +Q  + +  +A HS+VQ +P+ N+S   W++   ++      G G
Sbjct:  266 PVTFHPKGPGEYPCRIILRSPLDLRVFDLKGVAQSPGLQASVELVTAARHSIVQEIPIANTSIQEWTIRPHLKPTNADAGSG 347
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BLAST of mRNA_M-pyrifera_M_contig100536.119.1 vs. uniprot
Match: A0A5J4UVC4_9EUKA (Putative flagellar associated protein (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4UVC4_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 4.210e-5
Identity = 22/82 (26.83%), Postives = 41/82 (50.00%), Query Frame = 1 
Query:    4 PLILQPKGPGVYRTTVALLSDRETRVYEIRVAVTPQAIQKEMRMRVSAGHSVVQNLPVINSSPYPWSLSTEIEVLEGRHGPG 249
            P+   PK PG Y   + L S  + RV++++       +Q  + +  +A HS+VQ +P+ N+S   W++   ++      G G
Sbjct:  979 PVTFHPKDPGEYPCRIILRSPLDLRVFDLKEVAQSPGLQASVELVTAARHSIVQEIPIANTSIQEWTIRPHLKPTNADAGSG 1060
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100536.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7K4RGV7_9TYRA5.930e-930.83CFA47 protein (Fragment) n=9 Tax=Passeriformes Tax... [more]
UPI000FFD8B8B8.870e-831.67cilia- and flagella-associated protein 47 n=1 Tax=... [more]
A0A7R5KET9_9PASS1.650e-730.83cilia- and flagella-associated protein 47 n=16 Tax... [more]
A0A5J4TC28_9EUKA5.650e-628.05Uncharacterized protein (Fragment) n=1 Tax=Streblo... [more]
A0A5J4UVC4_9EUKA4.210e-526.83Putative flagellar associated protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100536contigM-pyrifera_M_contig100536:142..501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.5
Seed ortholog evalue6.4e-07
Seed eggNOG ortholog27923.ML035010a-PA
KEGG rclassRC00299
KEGG koko:K01593
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00037,M00042
Hectar predicted targeting categoryother localisation
EggNOG OGs2CBV6@1,2QQ4Q@2759,38CZ1@33154,3B9GB@33208
EC4.1.1.105,4.1.1.28
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.0450084-CDS-M-pyrifera_M_contig100536:141..5011622815502.0450084-CDS-M-pyrifera_M_contig100536:141..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100536 142..501 +
1692277440.3580077-CDS-M-pyrifera_M_contig100536:141..5011692277440.3580077-CDS-M-pyrifera_M_contig100536:141..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100536 142..501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100536.119.1prot_M-pyrifera_M_contig100536.119.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100536 142..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100536.119.1

>prot_M-pyrifera_M_contig100536.119.1 ID=prot_M-pyrifera_M_contig100536.119.1|Name=mRNA_M-pyrifera_M_contig100536.119.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
VPLILQPKGPGVYRTTVALLSDRETRVYEIRVAVTPQAIQKEMRMRVSAG
HSVVQNLPVINSSPYPWSLSTEIEVLEGRHGPGFHDASDTSRTQHHSFSL
PRHLSAAPGSTALVPLTFAP
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mRNA from alignment at M-pyrifera_M_contig100536:142..501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100536.119.1 ID=mRNA_M-pyrifera_M_contig100536.119.1|Name=mRNA_M-pyrifera_M_contig100536.119.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig100536:142..501+ (Macrocystis pyrifera P11B4 male)
GTGCCATTGATCTTGCAACCCAAAGGACCTGGTGTCTATCGTACCACAGT
TGCTCTCTTGTCTGATCGTGAAACAAGAGTGTATGAAATCCGAGTTGCTG
TGACACCACAAGCAATTCAAAAGGAAATGCGTATGCGGGTGTCAGCTGGA
CATTCTGTAGTACAGAACCTTCCTGTGATCAATTCGTCACCATATCCATG
GTCTCTGTCAACTGAAATTGAAGTATTAGAAGGACGGCATGGACCAGGAT
TCCATGATGCAAGTGATACATCACGAACACAACATCACTCCTTTTCCTTG
CCACGTCATCTTTCGGCAGCACCTGGATCAACTGCTTTAGTTCCTCTCAC
CTTTGCGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100536:142..501+

>mRNA_M-pyrifera_M_contig100536.119.1 ID=mRNA_M-pyrifera_M_contig100536.119.1|Name=mRNA_M-pyrifera_M_contig100536.119.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig100536:142..501+ (Macrocystis pyrifera P11B4 male)
GTGCCATTGATCTTGCAACCCAAAGGACCTGGTGTCTATCGTACCACAGT
TGCTCTCTTGTCTGATCGTGAAACAAGAGTGTATGAAATCCGAGTTGCTG
TGACACCACAAGCAATTCAAAAGGAAATGCGTATGCGGGTGTCAGCTGGA
CATTCTGTAGTACAGAACCTTCCTGTGATCAATTCGTCACCATATCCATG
GTCTCTGTCAACTGAAATTGAAGTATTAGAAGGACGGCATGGACCAGGAT
TCCATGATGCAAGTGATACATCACGAACACAACATCACTCCTTTTCCTTG
CCACGTCATCTTTCGGCAGCACCTGGATCAACTGCTTTAGTTCCTCTCAC
CTTTGCGCCAGTGCCATTGATCTTGCAACCCAAAGGACCTGGTGTCTATC
GTACCACAGTTGCTCTCTTGTCTGATCGTGAAACAAGAGTGTATGAAATC
CGAGTTGCTGTGACACCACAAGCAATTCAAAAGGAAATGCGTATGCGGGT
GTCAGCTGGACATTCTGTAGTACAGAACCTTCCTGTGATCAATTCGTCAC
CATATCCATGGTCTCTGTCAACTGAAATTGAAGTATTAGAAGGACGGCAT
GGACCAGGATTCCATGATGCAAGTGATACATCACGAACACAACATCACTC
CTTTTCCTTGCCACGTCATCTTTCGGCAGCACCTGGATCAACTGCTTTAG
TTCCTCTCACCTTTGCGCCA
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