mRNA_M-pyrifera_M_contig105440.1162.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105440.1162.1
Unique NamemRNA_M-pyrifera_M_contig105440.1162.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105440.1162.1 vs. uniprot
Match: UPI0011762C3E (DNA polymerase theta n=1 Tax=Myripristis murdjan TaxID=586833 RepID=UPI0011762C3E)

HSP 1 Score: 174 bits (442), Expect = 9.780e-47
Identity = 96/219 (43.84%), Postives = 148/219 (67.58%), Query Frame = 1 
Query:    1 KRALLIVPFVSLVMEKERFLEKVFNESIGITVEGSYANSASNRGYDDEVANVSICTIEKANAYVNKAIEEGTVGGIGIVVVDEIHMLAEGGRGALLQQLITKLRLVA---------GDSLQIVGLSATLPILDVIASWLDACAYQTDFRPVELTEYVVIGSQVYDRDLSTVVKTLPDAS-PSDIDLMLTLSLEVLEEGHSALVFCGSKHYAEQTCASLA 627
            ++AL I+PFVS+  EK  +L+ VF E+ G+ VEG   ++++  G+     +V++CTIEKAN+ +N+ IEE ++G +G+VVVDE+HM+ + GRG LL+ L+TK+R +A          +S+Q+VG+SATLP L ++A WLDA  YQTD+RPV L E++ +G+ +YD  LS V +  P      D D +++L  E + EGHS L+FC SK++ E+   S+A
Sbjct:  395 RKALFILPFVSVAKEKMHYLQSVFEEA-GVRVEGYMGSTSAAGGFT--ALDVAVCTIEKANSLINRLIEEDSMGLLGMVVVDELHMVGDSGRGYLLELLLTKIRYIAQKQNTTGSLSESVQVVGMSATLPNLSLLAGWLDAELYQTDYRPVPLQEHLKVGNNIYDSSLSLVRQFTPALQVKGDDDHIVSLCYETVSEGHSVLLFCPSKNWCEKLADSIA 610
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BLAST of mRNA_M-pyrifera_M_contig105440.1162.1 vs. uniprot
Match: A0A8C5FX72_GADMO (DNA-directed DNA polymerase n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FX72_GADMO)

HSP 1 Score: 174 bits (441), Expect = 1.310e-46
Identity = 99/214 (46.26%), Postives = 144/214 (67.29%), Query Frame = 1 
Query:    1 KRALLIVPFVSLVMEKERFLEKVFNESIGITVEGSYANSASNRGYDDEVANVSICTIEKANAYVNKAIEEGTVGGIGIVVVDEIHMLAEGGRGALLQQLITKLRLVA----GDSLQIVGLSATLPILDVIASWLDACAYQTDFRPVELTEYVVIGSQVYDRDLSTVVKTLPDAS-PSDIDLMLTLSLEVLEEGHSALVFCGSKHYAEQTCASLA 627
            ++AL I+PFVS+  EK  +L+ VF E+ G+ VEG    +++  G+     +V++CTIEKAN+ VN+ IEE ++  +G+VVVDE+HM+ + GRG LL+ L+TK+R +A     D +QI+G+SATLP L ++A WL A  YQTDFRPV L E V +GS +YD  LS V K  P  +   D D +++LS E + +GHS L+FC SK + E+   S+A
Sbjct:  123 RKALFILPFVSVAKEKMHYLQSVFEEA-GVRVEGYMGGTSAPGGF--RALDVAVCTIEKANSLVNRLIEEDSMDLLGMVVVDELHMVGDSGRGYLLELLLTKIRFIALHSFSDGVQIIGMSATLPNLALLAGWLGAELYQTDFRPVPLQELVKVGSNIYDNTLSLVRKFSPAINVKGDDDHIVSLSYETVRDGHSVLLFCPSKIWCEKLADSIA 333
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BLAST of mRNA_M-pyrifera_M_contig105440.1162.1 vs. uniprot
Match: A0A667YA76_9TELE (DNA-directed DNA polymerase n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667YA76_9TELE)

HSP 1 Score: 174 bits (440), Expect = 1.770e-46
Identity = 96/221 (43.44%), Postives = 148/221 (66.97%), Query Frame = 1 
Query:    1 KRALLIVPFVSLVMEKERFLEKVFNESIGITVEGSYANSASNRGYDDEVANVSICTIEKANAYVNKAIEEGTVGGIGIVVVDEIHMLAEGGRGALLQQLITKLRLVA-----------GDSLQIVGLSATLPILDVIASWLDACAYQTDFRPVELTEYVVIGSQVYDRDLSTVVKTLPDAS-PSDIDLMLTLSLEVLEEGHSALVFCGSKHYAEQTCASLA 627
            ++AL I+PFVS+  EK  +L+ VF E+ G+ VEG   ++++  G+     +V++CTIEKAN+ +N+ IEE ++G +G+VVVDE+HM+ + GRG LL+ L+TK+R +A            +S+Q+VG+SATLP L ++A WLDA  YQTD+RPV L E++ +G+ +YD  LS V +  P      D D +++L  E + EGHS L+FC SK++ E+   S+A
Sbjct:  176 RKALFILPFVSVAKEKMHYLQSVFEEA-GVRVEGYMGSTSAAGGFT--ALDVAVCTIEKANSLINRLIEEDSMGLLGMVVVDELHMVGDSGRGYLLELLLTKIRYIAQKQNTTGSVSLSESVQVVGMSATLPNLSLLAGWLDAELYQTDYRPVPLQEHLKVGNNIYDSSLSLVRQFTPALQVKGDDDHIVSLCYETVSEGHSVLLFCPSKNWCEKLADSIA 393
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BLAST of mRNA_M-pyrifera_M_contig105440.1162.1 vs. uniprot
Match: A0A4W6BKC6_LATCA (DNA-directed DNA polymerase n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6BKC6_LATCA)

HSP 1 Score: 174 bits (440), Expect = 1.780e-46
Identity = 96/216 (44.44%), Postives = 147/216 (68.06%), Query Frame = 1 
Query:    1 KRALLIVPFVSLVMEKERFLEKVFNESIGITVEGSYANSASNRGYDDEVANVSICTIEKANAYVNKAIEEGTVGGIGIVVVDEIHMLAEGGRGALLQQLITKLRLVA------GDSLQIVGLSATLPILDVIASWLDACAYQTDFRPVELTEYVVIGSQVYDRDLSTVVKTLPDAS-PSDIDLMLTLSLEVLEEGHSALVFCGSKHYAEQTCASLA 627
            ++AL I+PFVS+  EK  +L+ VF E+ G+ VEG   ++++  G+     +V++CTIEKAN+ +N+ IEE ++G +G+VVVDE+HM+ + GRG LL+ L+TK+R +A      G  +QI+G+SATLP L ++ASWL A  YQTD+RPV L E++ +G  +YD+ LS V +  P      D D +++L  E + EGHS L+FC SK++ E+   S+A
Sbjct:  242 RKALFILPFVSVAKEKMHYLQSVFEEA-GVRVEGYMGSTSAAGGFT--ALDVAVCTIEKANSLINRLIEEDSMGLLGMVVVDELHMVGDSGRGYLLELLLTKIRYIAQKQNVTGSGVQIIGMSATLPNLSLLASWLGAELYQTDYRPVPLQEHLKVGCNIYDKCLSVVRQFAPALHIKGDDDHIVSLCYETVREGHSVLLFCPSKNWCEKLADSIA 454
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BLAST of mRNA_M-pyrifera_M_contig105440.1162.1 vs. uniprot
Match: A0A667YDA4_9TELE (DNA-directed DNA polymerase n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667YDA4_9TELE)

HSP 1 Score: 174 bits (440), Expect = 1.780e-46
Identity = 96/221 (43.44%), Postives = 148/221 (66.97%), Query Frame = 1 
Query:    1 KRALLIVPFVSLVMEKERFLEKVFNESIGITVEGSYANSASNRGYDDEVANVSICTIEKANAYVNKAIEEGTVGGIGIVVVDEIHMLAEGGRGALLQQLITKLRLVA-----------GDSLQIVGLSATLPILDVIASWLDACAYQTDFRPVELTEYVVIGSQVYDRDLSTVVKTLPDAS-PSDIDLMLTLSLEVLEEGHSALVFCGSKHYAEQTCASLA 627
            ++AL I+PFVS+  EK  +L+ VF E+ G+ VEG   ++++  G+     +V++CTIEKAN+ +N+ IEE ++G +G+VVVDE+HM+ + GRG LL+ L+TK+R +A            +S+Q+VG+SATLP L ++A WLDA  YQTD+RPV L E++ +G+ +YD  LS V +  P      D D +++L  E + EGHS L+FC SK++ E+   S+A
Sbjct:  139 RKALFILPFVSVAKEKMHYLQSVFEEA-GVRVEGYMGSTSAAGGFT--ALDVAVCTIEKANSLINRLIEEDSMGLLGMVVVDELHMVGDSGRGYLLELLLTKIRYIAQKQNTTGSVSLSESVQVVGMSATLPNLSLLAGWLDAELYQTDYRPVPLQEHLKVGNNIYDSSLSLVRQFTPALQVKGDDDHIVSLCYETVSEGHSVLLFCPSKNWCEKLADSIA 356
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BLAST of mRNA_M-pyrifera_M_contig105440.1162.1 vs. uniprot
Match: UPI001CDBE39B (DNA polymerase theta isoform X1 n=5 Tax=Gambusia affinis TaxID=33528 RepID=UPI001CDBE39B)

HSP 1 Score: 173 bits (439), Expect = 2.460e-46
Identity = 95/219 (43.38%), Postives = 148/219 (67.58%), Query Frame = 1 
Query:    1 KRALLIVPFVSLVMEKERFLEKVFNESIGITVEGSYANSASNRGYDDEVANVSICTIEKANAYVNKAIEEGTVGGIGIVVVDEIHMLAEGGRGALLQQLITKLRLVA---------GDSLQIVGLSATLPILDVIASWLDACAYQTDFRPVELTEYVVIGSQVYDRDLSTVVKTLPDAS-PSDIDLMLTLSLEVLEEGHSALVFCGSKHYAEQTCASLA 627
            ++AL I+PFVS+  EK  +L+ VF E+ GI VEG   ++++  G+     +V++CTIEKAN+ +N+ IEE ++G +G+VVVDE+HM+ + GRG LL+ L+TK+R +A          + +QI+G+SATLP L ++ASWL A  YQTD+RPV L E++ +G  +YD+ LS V +  P  +   D D +++L  E + EGHS L+FC SK++ E+   ++A
Sbjct:  368 RKALFILPFVSVAKEKMHYLQSVFEEA-GIRVEGYMGSTSAAGGF--ATLDVAVCTIEKANSLINRLIEENSMGLLGMVVVDELHMVGDSGRGYLLELLLTKIRYIAQKQNTSGSLSEGVQIIGMSATLPNLSLLASWLSADLYQTDYRPVPLQEHLKVGCNIYDKSLSVVRQFAPALNIKGDDDHIVSLCYETVNEGHSVLLFCPSKNWCEKLADTIA 583
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BLAST of mRNA_M-pyrifera_M_contig105440.1162.1 vs. uniprot
Match: A0A315WA91_GAMAF (DNA-directed DNA polymerase (Fragment) n=7 Tax=Poeciliinae TaxID=586240 RepID=A0A315WA91_GAMAF)

HSP 1 Score: 173 bits (439), Expect = 2.460e-46
Identity = 95/219 (43.38%), Postives = 148/219 (67.58%), Query Frame = 1 
Query:    1 KRALLIVPFVSLVMEKERFLEKVFNESIGITVEGSYANSASNRGYDDEVANVSICTIEKANAYVNKAIEEGTVGGIGIVVVDEIHMLAEGGRGALLQQLITKLRLVA---------GDSLQIVGLSATLPILDVIASWLDACAYQTDFRPVELTEYVVIGSQVYDRDLSTVVKTLPDAS-PSDIDLMLTLSLEVLEEGHSALVFCGSKHYAEQTCASLA 627
            ++AL I+PFVS+  EK  +L+ VF E+ GI VEG   ++++  G+     +V++CTIEKAN+ +N+ IEE ++G +G+VVVDE+HM+ + GRG LL+ L+TK+R +A          + +QI+G+SATLP L ++ASWL A  YQTD+RPV L E++ +G  +YD+ LS V +  P  +   D D +++L  E + EGHS L+FC SK++ E+   ++A
Sbjct:  368 RKALFILPFVSVAKEKMHYLQSVFEEA-GIRVEGYMGSTSAAGGFT--TLDVAVCTIEKANSLINRLIEENSMGLLGMVVVDELHMVGDSGRGYLLELLLTKIRYIAQKQNTSGSLSEGVQIIGMSATLPNLSLLASWLSADLYQTDYRPVPLQEHLKVGCNIYDKSLSVVRQFAPALNIKGDDDHIVSLCYETVNEGHSVLLFCPSKNWCEKLADTIA 583
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BLAST of mRNA_M-pyrifera_M_contig105440.1162.1 vs. uniprot
Match: UPI001885AD34 (DNA polymerase theta isoform X1 n=2 Tax=Syngnathus acus TaxID=161584 RepID=UPI001885AD34)

HSP 1 Score: 173 bits (438), Expect = 3.340e-46
Identity = 97/220 (44.09%), Postives = 150/220 (68.18%), Query Frame = 1 
Query:    1 KRALLIVPFVSLVMEKERFLEKVFNESIGITVEGSYANSASNRGYDDEVANVSICTIEKANAYVNKAIEEGTVGGIGIVVVDEIHMLAEGGRGALLQQLITKLRLVA---------GDSLQIVGLSATLPILDVIASWLDACAYQTDFRPVELTEYVVIGSQVYDRDLSTVVKTLPDASPS--DIDLMLTLSLEVLEEGHSALVFCGSKHYAEQTCASLA 627
            ++ALLI+PFVS+  EK  +L+ VF E+ G+ V+G   ++++  G+     +V++CTIEKAN+ +N+ IEEG +  +G+VVVDE+HM+ + GRG LL+ L+TK+R VA          + +QIVG+SATLP L ++A+WL A  YQTD+RPV L E++ +G  +YD+ L TVV+    A P+  D + +++L  E + EGHS L+FC SK++ E+   S+A
Sbjct:  304 RKALLILPFVSVAKEKMHYLQSVFQEA-GVRVDGFMGSTSAAGGF--AAVDVAVCTIEKANSLINRLIEEGNMALLGMVVVDELHMVGDSGRGYLLELLLTKIRYVAQKLNSAGSLSEGVQIVGMSATLPNLSLLANWLGAELYQTDYRPVPLQEHLKVGCNIYDKSL-TVVRKFTPALPTKGDDEHIISLCYETVREGHSVLLFCPSKNWCEKLADSIA 519
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BLAST of mRNA_M-pyrifera_M_contig105440.1162.1 vs. uniprot
Match: A0A3P9NJ30_POERE (DNA-directed DNA polymerase n=17 Tax=Poecilia TaxID=8080 RepID=A0A3P9NJ30_POERE)

HSP 1 Score: 172 bits (437), Expect = 4.560e-46
Identity = 96/219 (43.84%), Postives = 148/219 (67.58%), Query Frame = 1 
Query:    1 KRALLIVPFVSLVMEKERFLEKVFNESIGITVEGSYANSASNRGYDDEVANVSICTIEKANAYVNKAIEEGTVGGIGIVVVDEIHMLAEGGRGALLQQLITKLRLVA---------GDSLQIVGLSATLPILDVIASWLDACAYQTDFRPVELTEYVVIGSQVYDRDLSTVVKTLPDAS-PSDIDLMLTLSLEVLEEGHSALVFCGSKHYAEQTCASLA 627
            ++AL IVPFVS+  EK  +L+ VF E+ GI VEG   ++++  G+     +V++CTIEKAN+ +N+ IEE ++  +G+VVVDE+HM+ + GRG LL+ L+TK+R +A          + +QI+G+SATLP L ++ASWL A  YQTD+RPV L E++ +G  +YD+ LS V +  P  S   D D +++L  E ++EGHS L+FC SK++ E+   ++A
Sbjct:  370 RKALFIVPFVSVAKEKMHYLQSVFEEA-GIRVEGYMGSTSAAGGFT--TLDVAVCTIEKANSLINRLIEENSMCLLGMVVVDELHMVGDSGRGYLLELLLTKIRYIAQKQNTSGSLSEGVQIIGMSATLPNLSLLASWLSADLYQTDYRPVPLQEHLKVGCNIYDKSLSVVRQFAPTLSVKGDDDHIVSLCYETVKEGHSVLLFCPSKNWCEKLADTVA 585
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BLAST of mRNA_M-pyrifera_M_contig105440.1162.1 vs. uniprot
Match: UPI001FAD290A (DNA polymerase theta n=1 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAD290A)

HSP 1 Score: 172 bits (437), Expect = 4.570e-46
Identity = 95/219 (43.38%), Postives = 148/219 (67.58%), Query Frame = 1 
Query:    1 KRALLIVPFVSLVMEKERFLEKVFNESIGITVEGSYANSASNRGYDDEVANVSICTIEKANAYVNKAIEEGTVGGIGIVVVDEIHMLAEGGRGALLQQLITKLRLVA---------GDSLQIVGLSATLPILDVIASWLDACAYQTDFRPVELTEYVVIGSQVYDRDLSTVVKTLPDAS-PSDIDLMLTLSLEVLEEGHSALVFCGSKHYAEQTCASLA 627
            ++AL I+PFVS+  EK  +L+ VF E  G+ VEG   ++++  G+     +V++CTIEKAN+ +N+ IEE  +G +GIVVVDE+HM+ + GRG LL+ L+TK+R +A         G+ +QI+G+SATLP L ++ASWL A  YQTD+RPV L E++ +G  +Y++ LS V + +P  +   D D +++L  E + EGHS L+FC SK++ E+   ++A
Sbjct:  374 RKALFILPFVSVAKEKMHYLQSVF-EDAGVRVEGYMGSTSAAGGFT--TLDVAVCTIEKANSLINRLIEENNMGLLGIVVVDELHMVGDPGRGYLLELLLTKIRYIAQKQNTSGCLGEGVQIIGMSATLPNLSLLASWLGADLYQTDYRPVPLQEHLKVGCNIYNKSLSVVRQFVPALNIKGDDDHIVSLCYETVREGHSVLLFCPSKNWCEKLVDTIA 589
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105440.1162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0011762C3E9.780e-4743.84DNA polymerase theta n=1 Tax=Myripristis murdjan T... [more]
A0A8C5FX72_GADMO1.310e-4646.26DNA-directed DNA polymerase n=1 Tax=Gadus morhua T... [more]
A0A667YA76_9TELE1.770e-4643.44DNA-directed DNA polymerase n=1 Tax=Myripristis mu... [more]
A0A4W6BKC6_LATCA1.780e-4644.44DNA-directed DNA polymerase n=1 Tax=Lates calcarif... [more]
A0A667YDA4_9TELE1.780e-4643.44DNA-directed DNA polymerase n=1 Tax=Myripristis mu... [more]
UPI001CDBE39B2.460e-4643.38DNA polymerase theta isoform X1 n=5 Tax=Gambusia a... [more]
A0A315WA91_GAMAF2.460e-4643.38DNA-directed DNA polymerase (Fragment) n=7 Tax=Poe... [more]
UPI001885AD343.340e-4644.09DNA polymerase theta isoform X1 n=2 Tax=Syngnathus... [more]
A0A3P9NJ30_POERE4.560e-4643.84DNA-directed DNA polymerase n=17 Tax=Poecilia TaxI... [more]
UPI001FAD290A4.570e-4643.38DNA polymerase theta n=1 Tax=Girardinichthys multi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105440contigM-pyrifera_M_contig105440:9..635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score178.3
Seed ortholog evalue3.6e-42
Seed eggNOG ortholog48698.ENSPFOP00000019748
Preferred namePOLQ
KEGG koko:K02349
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000724,GO:0000725,GO:0000726,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003824,GO:0003887,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006282,GO:0006284,GO:0006289,GO:0006302,GO:0006303,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010569,GO:0010605,GO:0016043,GO:0016445,GO:0016446,GO:0016462,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016817,GO:0016818,GO:0016829,GO:0016835,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0036297,GO:0042623,GO:0042802,GO:0043142,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045738,GO:0045910,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051259,GO:0051260,GO:0051575,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097681,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:2000042,GO:2000779,GO:2000780,GO:2001020,GO:2001021
EggNOG free text desc.Polymerase (DNA directed), theta
EggNOG OGs38BKB@33154,3BATG@33208,3CT13@33213,47ZXJ@7711,497BB@7742,49UCC@7898,COG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.A
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons1
Model size627
Cds size627
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.4416616-CDS-M-pyrifera_M_contig105440:8..6351622815562.4416616-CDS-M-pyrifera_M_contig105440:8..635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105440 9..635 +
1692277465.115981-CDS-M-pyrifera_M_contig105440:8..6351692277465.115981-CDS-M-pyrifera_M_contig105440:8..635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105440 9..635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105440.1162.1prot_M-pyrifera_M_contig105440.1162.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105440 9..635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105440.1162.1

>prot_M-pyrifera_M_contig105440.1162.1 ID=prot_M-pyrifera_M_contig105440.1162.1|Name=mRNA_M-pyrifera_M_contig105440.1162.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=209bp
KRALLIVPFVSLVMEKERFLEKVFNESIGITVEGSYANSASNRGYDDEVA
NVSICTIEKANAYVNKAIEEGTVGGIGIVVVDEIHMLAEGGRGALLQQLI
TKLRLVAGDSLQIVGLSATLPILDVIASWLDACAYQTDFRPVELTEYVVI
GSQVYDRDLSTVVKTLPDASPSDIDLMLTLSLEVLEEGHSALVFCGSKHY
AEQTCASLA
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mRNA from alignment at M-pyrifera_M_contig105440:9..635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105440.1162.1 ID=mRNA_M-pyrifera_M_contig105440.1162.1|Name=mRNA_M-pyrifera_M_contig105440.1162.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=627bp|location=Sequence derived from alignment at M-pyrifera_M_contig105440:9..635+ (Macrocystis pyrifera P11B4 male)
AAGAGAGCCTTGTTGATAGTGCCATTCGTAAGTCTCGTGATGGAGAAGGA
GCGCTTTCTCGAGAAGGTGTTCAACGAATCAATTGGGATCACTGTGGAAG
GTTCCTATGCAAACAGTGCTTCCAATCGAGGATACGATGACGAGGTGGCT
AATGTGTCGATTTGTACCATAGAGAAGGCGAACGCCTATGTAAATAAGGC
CATTGAGGAGGGGACAGTGGGAGGCATTGGCATTGTGGTTGTGGATGAGA
TTCACATGTTGGCTGAGGGAGGACGAGGAGCCCTCCTGCAACAGCTCATC
ACAAAGCTGCGCCTGGTTGCTGGTGACAGCCTCCAGATTGTTGGCCTGAG
CGCCACGCTCCCCATCCTTGACGTCATTGCCAGCTGGCTGGACGCCTGCG
CCTATCAGACTGACTTCCGACCCGTGGAGCTGACGGAGTATGTTGTCATT
GGCTCTCAGGTCTACGACAGAGACCTCTCGACTGTTGTGAAGACACTGCC
CGACGCCTCTCCTTCAGACATTGACCTGATGCTTACACTCTCTCTGGAAG
TGCTCGAGGAGGGTCACTCTGCTCTTGTTTTTTGTGGATCCAAGCATTAC
GCAGAGCAGACCTGCGCCTCTCTCGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105440:9..635+

>mRNA_M-pyrifera_M_contig105440.1162.1 ID=mRNA_M-pyrifera_M_contig105440.1162.1|Name=mRNA_M-pyrifera_M_contig105440.1162.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1254bp|location=Sequence derived from alignment at M-pyrifera_M_contig105440:9..635+ (Macrocystis pyrifera P11B4 male)
AAGAGAGCCTTGTTGATAGTGCCATTCGTAAGTCTCGTGATGGAGAAGGA
GCGCTTTCTCGAGAAGGTGTTCAACGAATCAATTGGGATCACTGTGGAAG
GTTCCTATGCAAACAGTGCTTCCAATCGAGGATACGATGACGAGGTGGCT
AATGTGTCGATTTGTACCATAGAGAAGGCGAACGCCTATGTAAATAAGGC
CATTGAGGAGGGGACAGTGGGAGGCATTGGCATTGTGGTTGTGGATGAGA
TTCACATGTTGGCTGAGGGAGGACGAGGAGCCCTCCTGCAACAGCTCATC
ACAAAGCTGCGCCTGGTTGCTGGTGACAGCCTCCAGATTGTTGGCCTGAG
CGCCACGCTCCCCATCCTTGACGTCATTGCCAGCTGGCTGGACGCCTGCG
CCTATCAGACTGACTTCCGACCCGTGGAGCTGACGGAGTATGTTGTCATT
GGCTCTCAGGTCTACGACAGAGACCTCTCGACTGTTGTGAAGACACTGCC
CGACGCCTCTCCTTCAGACATTGACCTGATGCTTACACTCTCTCTGGAAG
TGCTCGAGGAGGGTCACTCTGCTCTTGTTTTTTGTGGATCCAAGCATTAC
GCAGAGCAGACCTGCGCCTCTCTCGCTAAGAGAGCCTTGTTGATAGTGCC
ATTCGTAAGTCTCGTGATGGAGAAGGAGCGCTTTCTCGAGAAGGTGTTCA
ACGAATCAATTGGGATCACTGTGGAAGGTTCCTATGCAAACAGTGCTTCC
AATCGAGGATACGATGACGAGGTGGCTAATGTGTCGATTTGTACCATAGA
GAAGGCGAACGCCTATGTAAATAAGGCCATTGAGGAGGGGACAGTGGGAG
GCATTGGCATTGTGGTTGTGGATGAGATTCACATGTTGGCTGAGGGAGGA
CGAGGAGCCCTCCTGCAACAGCTCATCACAAAGCTGCGCCTGGTTGCTGG
TGACAGCCTCCAGATTGTTGGCCTGAGCGCCACGCTCCCCATCCTTGACG
TCATTGCCAGCTGGCTGGACGCCTGCGCCTATCAGACTGACTTCCGACCC
GTGGAGCTGACGGAGTATGTTGTCATTGGCTCTCAGGTCTACGACAGAGA
CCTCTCGACTGTTGTGAAGACACTGCCCGACGCCTCTCCTTCAGACATTG
ACCTGATGCTTACACTCTCTCTGGAAGTGCTCGAGGAGGGTCACTCTGCT
CTTGTTTTTTGTGGATCCAAGCATTACGCAGAGCAGACCTGCGCCTCTCT
CGCT
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