mRNA_M-pyrifera_M_contig105419.1157.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105419.1157.1
Unique NamemRNA_M-pyrifera_M_contig105419.1157.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105419.1157.1 vs. uniprot
Match: A0A6B2L247_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L247_9EUKA)

HSP 1 Score: 92.0 bits (227), Expect = 1.350e-18
Identity = 59/164 (35.98%), Postives = 89/164 (54.27%), Query Frame = 1 
Query:   22 TFVNIFWTDYNSCNDELYLLAGDENSLTALNVMLYTFDMVDGGVTGVLVDNSEYTISSIHSDPQSCSSSVYAMSPGLVDTPADELVWSLIQIDPRSGSVTDAVAVTEPGMYNAYYGGGVYGNAVCKNQLTHLFQRSSDQVVEGLVIDMSNGSTIWSFMPNVGVN 513
            TFVN FW D++  +   Y+LAGDENSL  LNV+LY  D   G  + V VDN++YT+S+I  D  +    +Y++SPGL         WS++ IDP++G V+    +     + + Y GGVY N +   +LT+ F           +ID+  G   +    N+G+N
Sbjct:  335 TFVNFFWADFDPLSGNTYILAGDENSLYQLNVVLYVVDKT-GKSSVVWVDNTKYTLSNIFVDRTT--GIIYSVSPGLFGMNN----WSIVTIDPKTGGVSFVSKIAGGERFKSEYKGGVY-NGLQNGKLTYSFTWYKTGASLLTLIDIQTGQVQFQTDINLGIN 490
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BLAST of mRNA_M-pyrifera_M_contig105419.1157.1 vs. uniprot
Match: V4B8B8_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B8B8_LOTGI)

HSP 1 Score: 82.4 bits (202), Expect = 3.330e-15
Identity = 58/174 (33.33%), Postives = 93/174 (53.45%), Query Frame = 1 
Query:    4 TPIGEFTFVNIFWTDYNSCNDELYLLAGDENSLTALNVMLYTFDMVDGGVTGV---LVDNSEYTISSIHSDPQSCSSSVYAMSPGLVDT--PADELVWSLIQIDPRSGSVTDAVAVTEPGMYNAYYGGGVYGNAVCKNQ--LTHLFQRSSDQVVEGLVIDMSNGSTIWSFMPNV 504
            TP  E  FVN  W +Y+S N+ +Y+L G+EN+   L+  +YTF +       +    +D S+YT  S+H    S    + A+SPGL  T  PA    +SL++ID  +GSV +   +T PG++  YYGG +  NA+ +    LT  F+ +  +      ID++  +  +S M N+
Sbjct:  348 TPTTENLFVNFQWMEYDSKNNIVYVLLGNENAADTLDARIYTFSVTSSKALFMGYKSLDVSKYTFMSMHY--HSAKGQLLAISPGLFSTKYPA----YSLLKIDVNTGSVQELSKITPPGIFEKYYGGSII-NAIDQQSGILTQAFRVADSEADVVASIDLNKLTVTFSQMTNL 514
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BLAST of mRNA_M-pyrifera_M_contig105419.1157.1 vs. uniprot
Match: UPI001EE58372 (uncharacterized protein LOC124290088 n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE58372)

HSP 1 Score: 76.3 bits (186), Expect = 4.640e-13
Identity = 54/169 (31.95%), Postives = 90/169 (53.25%), Query Frame = 1 
Query:    7 PIGEFTFVNIFWTDYNSCNDELYLLAGDENSLTALNVMLYTFDM-VDGGVTGVLVDNSEYTISSIHSDPQSCSSSVYAMSPGLV-DTPADELVWSLIQIDPRSGSVTDAVAVTEPGMYNAYYGGGVY-GNAVCKNQLTHLFQRSSDQVVEGLVIDMSNGSTIWSFMPNV 504
            P  E T+VN  W +Y+     L++L G+EN    L+  +YTFD+      +   +D S+YT  S+    ++    + A+SPGL  DT      +SLI +DP +G+V D   +T+PG++  YYGG ++ G    K  L H+F+ +  +      I +S+  T +S + N+
Sbjct:  352 PDTEDTYVNFQWAEYDPGRMMLFVLLGNENDADGLSARIYTFDISAKAFKSHADIDVSKYTFMSMQLYTKT--GQLLAVSPGLFKDTYPG---YSLISVDPFTGAVVDLAEITQPGIFEKYYGGTIFNGMDQEKGILYHVFRVADAEADVIATISLSDMKTTFSKITNI 515
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105419.1157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6B2L247_9EUKA1.350e-1835.98Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
V4B8B8_LOTGI3.330e-1533.33Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
UPI001EE583724.640e-1331.95uncharacterized protein LOC124290088 n=2 Tax=Halio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105419contigM-pyrifera_M_contig105419:6..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score70.5
Seed ortholog evalue8.8e-10
Seed eggNOG ortholog6500.XP_005099410.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2A0XH@1,2RXZH@2759,3A0GX@33154,3BPIT@33208,3D96A@33213
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.1860352-CDS-M-pyrifera_M_contig105419:5..5181622815562.1860352-CDS-M-pyrifera_M_contig105419:5..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105419 6..518 +
1692277464.9801521-CDS-M-pyrifera_M_contig105419:5..5181692277464.9801521-CDS-M-pyrifera_M_contig105419:5..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105419 6..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105419.1157.1prot_M-pyrifera_M_contig105419.1157.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105419 6..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105419.1157.1

>prot_M-pyrifera_M_contig105419.1157.1 ID=prot_M-pyrifera_M_contig105419.1157.1|Name=mRNA_M-pyrifera_M_contig105419.1157.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
TTPIGEFTFVNIFWTDYNSCNDELYLLAGDENSLTALNVMLYTFDMVDGG
VTGVLVDNSEYTISSIHSDPQSCSSSVYAMSPGLVDTPADELVWSLIQID
PRSGSVTDAVAVTEPGMYNAYYGGGVYGNAVCKNQLTHLFQRSSDQVVEG
LVIDMSNGSTIWSFMPNVGVN
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mRNA from alignment at M-pyrifera_M_contig105419:6..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105419.1157.1 ID=mRNA_M-pyrifera_M_contig105419.1157.1|Name=mRNA_M-pyrifera_M_contig105419.1157.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig105419:6..518+ (Macrocystis pyrifera P11B4 male)
ACCACGCCCATTGGTGAGTTCACTTTCGTGAACATCTTCTGGACCGACTA
CAACTCTTGCAACGATGAGCTGTACCTCCTCGCCGGCGACGAGAACTCGC
TCACCGCACTCAACGTGATGCTCTACACCTTCGACATGGTTGACGGTGGC
GTCACTGGCGTTCTTGTGGACAACTCGGAGTACACCATCTCCAGCATCCA
CAGCGACCCCCAGTCGTGCAGCTCCTCCGTGTATGCGATGTCGCCCGGCC
TCGTCGACACACCAGCCGACGAGCTCGTCTGGTCTCTCATCCAGATCGAC
CCCAGGAGCGGGTCTGTCACAGACGCAGTTGCAGTGACTGAGCCTGGCAT
GTACAACGCTTACTACGGCGGTGGCGTGTACGGCAACGCCGTGTGCAAGA
ACCAGCTCACGCACCTCTTCCAGCGCAGCAGCGACCAGGTTGTCGAGGGC
CTCGTCATCGACATGAGCAACGGCTCCACCATCTGGAGCTTCATGCCCAA
CGTCGGCGTCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105419:6..518+

>mRNA_M-pyrifera_M_contig105419.1157.1 ID=mRNA_M-pyrifera_M_contig105419.1157.1|Name=mRNA_M-pyrifera_M_contig105419.1157.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig105419:6..518+ (Macrocystis pyrifera P11B4 male)
ACCACGCCCATTGGTGAGTTCACTTTCGTGAACATCTTCTGGACCGACTA
CAACTCTTGCAACGATGAGCTGTACCTCCTCGCCGGCGACGAGAACTCGC
TCACCGCACTCAACGTGATGCTCTACACCTTCGACATGGTTGACGGTGGC
GTCACTGGCGTTCTTGTGGACAACTCGGAGTACACCATCTCCAGCATCCA
CAGCGACCCCCAGTCGTGCAGCTCCTCCGTGTATGCGATGTCGCCCGGCC
TCGTCGACACACCAGCCGACGAGCTCGTCTGGTCTCTCATCCAGATCGAC
CCCAGGAGCGGGTCTGTCACAGACGCAGTTGCAGTGACTGAGCCTGGCAT
GTACAACGCTTACTACGGCGGTGGCGTGTACGGCAACGCCGTGTGCAAGA
ACCAGCTCACGCACCTCTTCCAGCGCAGCAGCGACCAGGTTGTCGAGGGC
CTCGTCATCGACATGAGCAACGGCTCCACCATCTGGAGCTTCATGCCCAA
CGTCGGCGTCAACACCACGCCCATTGGTGAGTTCACTTTCGTGAACATCT
TCTGGACCGACTACAACTCTTGCAACGATGAGCTGTACCTCCTCGCCGGC
GACGAGAACTCGCTCACCGCACTCAACGTGATGCTCTACACCTTCGACAT
GGTTGACGGTGGCGTCACTGGCGTTCTTGTGGACAACTCGGAGTACACCA
TCTCCAGCATCCACAGCGACCCCCAGTCGTGCAGCTCCTCCGTGTATGCG
ATGTCGCCCGGCCTCGTCGACACACCAGCCGACGAGCTCGTCTGGTCTCT
CATCCAGATCGACCCCAGGAGCGGGTCTGTCACAGACGCAGTTGCAGTGA
CTGAGCCTGGCATGTACAACGCTTACTACGGCGGTGGCGTGTACGGCAAC
GCCGTGTGCAAGAACCAGCTCACGCACCTCTTCCAGCGCAGCAGCGACCA
GGTTGTCGAGGGCCTCGTCATCGACATGAGCAACGGCTCCACCATCTGGA
GCTTCATGCCCAACGTCGGCGTCAAC
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