mRNA_M-pyrifera_M_contig105416.1156.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: B7S2V1_9GAMM (DNA-directed RNA polymerase subunit alpha n=30 Tax=Proteobacteria TaxID=1224 RepID=B7S2V1_9GAMM) HSP 1 Score: 357 bits (917), Expect = 5.910e-122 Identity = 184/211 (87.20%), Postives = 194/211 (91.94%), Query Frame = 1 Query: 1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633 LSSMPGCAITEVEIDGV HEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLS+KG G VTA DIQVDHDIEIRNPDHVICHLNG+S+I+MKLTVARGRGYSPADSRENPEEETR+IGRL LDATF+P++RV+YVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLES EDE DP LLRP DD Sbjct: 48 LSSMPGCAITEVEIDGVLHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSKKGSGAVTAADIQVDHDIEIRNPDHVICHLNGASEINMKLTVARGRGYSPADSRENPEEETRSIGRLQLDATFAPVHRVSYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESXXXXXXXXXEDEVDPILLRPVDD 258
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A0A2E7IT38_9GAMM (DNA-directed RNA polymerase subunit alpha n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E7IT38_9GAMM) HSP 1 Score: 345 bits (884), Expect = 5.920e-117 Identity = 175/211 (82.94%), Postives = 193/211 (91.47%), Query Frame = 1 Query: 1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633 LSSMPGCA+TEVEIDGV+HEYSA+EGVQEDVIE+LLNLKGVA+VMNGK++A L LS+KGPGVVTAGDIQVDHDIEI+NP+HVI LN + +++M+LTV RGRGY PAD+RE EEETR+IGRL LDATFSPINRVAYVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESE SEP EEDE DP LLRP DD Sbjct: 48 LSSMPGCAVTEVEIDGVQHEYSAMEGVQEDVIEVLLNLKGVAVVMNGKDQAVLNLSKKGPGVVTAGDIQVDHDIEIKNPEHVIATLNEAGELNMRLTVGRGRGYVPADAREAGEEETRSIGRLSLDATFSPINRVAYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESEGDSEPAREEDEVDPILLRPVDD 258
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A0A095XTG2_9GAMM (DNA-directed RNA polymerase subunit alpha n=3 Tax=Halieaceae TaxID=1706372 RepID=A0A095XTG2_9GAMM) HSP 1 Score: 345 bits (884), Expect = 6.130e-117 Identity = 174/211 (82.46%), Postives = 190/211 (90.05%), Query Frame = 1 Query: 1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633 LSSMPGCAITEVEIDGV HEYS IEG+QEDVIEILLNLK VALVM GK+E ELTL+++GPG VTAGDIQ DHD+EIRNP+HVICH+N +SMK+T ARGRGYSPADSRE+PEEETR+IGRL LDATF+P++RVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESE+ SE EDE DP LLRP DD Sbjct: 48 LSSMPGCAITEVEIDGVLHEYSTIEGIQEDVIEILLNLKEVALVMAGKDEVELTLTKEGPGAVTAGDIQTDHDVEIRNPEHVICHINDKKALSMKVTAARGRGYSPADSREDPEEETRSIGRLQLDATFTPVHRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESEAHSESADSEDEVDPILLRPVDD 258
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A0A2G6DZS5_9GAMM (DNA-directed RNA polymerase subunit alpha n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6DZS5_9GAMM) HSP 1 Score: 342 bits (877), Expect = 7.090e-116 Identity = 172/211 (81.52%), Postives = 193/211 (91.47%), Query Frame = 1 Query: 1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633 LSSMPGCAITEV+IDGV HEYSAIEGVQEDVIEILLNLKGVALV+NGK+EAEL +++ G GVVTAGDIQ+DHD+E+RNP+HVICHLNG S I+++L V RGRGYSPADSR + EEETR+IGRL LDATFSP+ RV+YVVEAARVEQRTDLDKL+LDL+TNGTIDPEEAIRRAATILQQQLAVFVDLESE ++E V EEDE DP LLRP DD Sbjct: 48 LSSMPGCAITEVQIDGVLHEYSAIEGVQEDVIEILLNLKGVALVLNGKDEAELVINKTGAGVVTAGDIQLDHDVEVRNPEHVICHLNGDSSIAIRLKVMRGRGYSPADSRIDAEEETRSIGRLQLDATFSPVYRVSYVVEAARVEQRTDLDKLILDLQTNGTIDPEEAIRRAATILQQQLAVFVDLESEKEAETVEEEDEVDPILLRPVDD 258
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: F3KYC8_9GAMM (DNA-directed RNA polymerase subunit alpha n=2 Tax=Halieaceae TaxID=1706372 RepID=F3KYC8_9GAMM) HSP 1 Score: 340 bits (872), Expect = 4.080e-115 Identity = 173/211 (81.99%), Postives = 191/211 (90.52%), Query Frame = 1 Query: 1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633 LSSMPGCAITEV+IDGV HEYS IEGVQEDVIEILLNLK VA+V+NGK+EAELTLS+K PG VTAGDI +DHD+EI NPDHVIC++ G S +++KL V+RGRGYSPADSR N E+ETRAIGRL LDATFSPI RVAYVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESE ++E V+EEDE DP LLRP DD Sbjct: 48 LSSMPGCAITEVQIDGVLHEYSTIEGVQEDVIEILLNLKDVAVVLNGKDEAELTLSKKEPGPVTAGDITLDHDVEICNPDHVICNVTGGSGVNLKLVVSRGRGYSPADSRGNEEDETRAIGRLQLDATFSPIRRVAYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESEGEAEAVVEEDEVDPILLRPVDD 258
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A4A660_9GAMM (DNA-directed RNA polymerase subunit alpha n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A4A660_9GAMM) HSP 1 Score: 333 bits (853), Expect = 3.140e-112 Identity = 171/211 (81.04%), Postives = 186/211 (88.15%), Query Frame = 1 Query: 1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633 LSSMPGCAITEVEIDGV HEYSAIEGVQEDVIEILLNLKGVAL+MNGK+EAEL LS++G G VTA DIQ DHDIEI NP+H+IC LN S + MKLT+ARGRGYSPAD+RENPEEETR+IGRL LDATFSP+ RV+YVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATIL QL VFVDL+SE+Q+ EDE DP LLRP DD Sbjct: 48 LSSMPGCAITEVEIDGVLHEYSAIEGVQEDVIEILLNLKGVALIMNGKDEAELVLSKEGEGPVTAADIQTDHDIEICNPEHLICTLNSKSAVHMKLTIARGRGYSPADARENPEEETRSIGRLQLDATFSPVMRVSYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILNDQLRVFVDLQSETQAVTSDAEDEVDPVLLRPVDD 258
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A0A2E2XEG8_9GAMM (DNA-directed RNA polymerase subunit alpha n=10 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E2XEG8_9GAMM) HSP 1 Score: 332 bits (850), Expect = 8.390e-112 Identity = 165/211 (78.20%), Postives = 191/211 (90.52%), Query Frame = 1 Query: 1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633 LSSMPGCA+TEVEIDGV HEYSAIEGVQEDV EILLNLKGVA+VM+GK++A LTLS+KGPGVVTAGDIQVDH++EI+NP+HVI ++ G D++MKLTVARGRGY PAD+R + EEETRAIGRL LDA++SP+ R+AY VE+ARVEQRTDLDKL+LDLETNGTIDPEEAIRRAATILQQQLAVFVDLE E ++EP +E+E DP LLRP DD Sbjct: 48 LSSMPGCAVTEVEIDGVLHEYSAIEGVQEDVXEILLNLKGVAVVMHGKDQAVLTLSKKGPGVVTAGDIQVDHEVEIKNPEHVIANITGDVDLNMKLTVARGRGYQPADARRSDEEETRAIGRLQLDASYSPVKRLAYQVESARVEQRTDLDKLILDLETNGTIDPEEAIRRAATILQQQLAVFVDLEGEKEAEPEEKEEEIDPVLLRPVDD 258
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: B8KWI7_9GAMM (DNA-directed RNA polymerase subunit alpha n=1 Tax=Luminiphilus syltensis NOR5-1B TaxID=565045 RepID=B8KWI7_9GAMM) HSP 1 Score: 330 bits (847), Expect = 2.560e-111 Identity = 166/211 (78.67%), Postives = 187/211 (88.63%), Query Frame = 1 Query: 1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633 LSSMPGCAITEVEIDGV HEYSAIEGVQEDVIEILLNLKGVAL M GK+EAEL+L KGP VTAGDIQVDHD+E+ NPDHVIC L +++++L RGRGYSPADSRE+PE+ETR+IGRLHLDA+FSPI R++YVVE+ARVEQRTDLDKLV+DLETNGTIDPEEAIRRAATILQQQL+VFVDLESE+Q+ +EDE DP LLRP DD Sbjct: 48 LSSMPGCAITEVEIDGVLHEYSAIEGVQEDVIEILLNLKGVALTMAGKDEAELSLVAKGPCTVTAGDIQVDHDVEVSNPDHVICTLTSDQELAVRLVAQRGRGYSPADSREDPEDETRSIGRLHLDASFSPIRRISYVVESARVEQRTDLDKLVIDLETNGTIDPEEAIRRAATILQQQLSVFVDLESEAQTTATEQEDEVDPILLRPVDD 258
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: UPI00036B387C (DNA-directed RNA polymerase subunit alpha n=1 Tax=Dasania marina TaxID=471499 RepID=UPI00036B387C) HSP 1 Score: 330 bits (846), Expect = 3.630e-111 Identity = 167/211 (79.15%), Postives = 188/211 (89.10%), Query Frame = 1 Query: 1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633 LSSMPGCAI E EIDGV HEYSAIEGV+EDVIEILLNLKGV++VMNGK+EA L+LS+KGPGVVTA DIQVDHDIEI+NP HVI HLN S +I+MKLTV RGRGY P +R+ ++ETR IGRL LDA++SP++RVAYVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQL+VFVDLESE + EPV EED+ DP LLRP DD Sbjct: 48 LSSMPGCAIIEAEIDGVLHEYSAIEGVKEDVIEILLNLKGVSIVMNGKDEAVLSLSKKGPGVVTAADIQVDHDIEIKNPGHVIAHLNDSGEINMKLTVGRGRGYVPVGARQTEDDETRTIGRLQLDASYSPVHRVAYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLSVFVDLESEKEVEPVEEEDQVDPILLRPVDD 258
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: I2JLX6_9GAMM (DNA-directed RNA polymerase subunit alpha n=11 Tax=Spongiibacteraceae TaxID=1706375 RepID=I2JLX6_9GAMM) HSP 1 Score: 327 bits (838), Expect = 5.770e-110 Identity = 166/211 (78.67%), Postives = 192/211 (91.00%), Query Frame = 1 Query: 1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633 LSSMPGCAITEVEIDGV HEYSA+EGVQEDVIEILLNLK VA++M+GK++A L+L++KGPGVVTAGDIQ DH+IEI N DHVI +LN +I+M+LT+ARGRGY PAD+R+N EEETR+IGRL LDA++SPI+RV+YVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESE ++EP EE+E DP LLRP DD Sbjct: 48 LSSMPGCAITEVEIDGVLHEYSAMEGVQEDVIEILLNLKEVAVIMHGKDQAILSLNKKGPGVVTAGDIQTDHEIEIVNTDHVIANLNDDGEINMRLTIARGRGYVPADARDNGEEETRSIGRLQLDASYSPISRVSYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESEGENEPSREENEVDPILLRPVDD 258 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig105416.1156.1 >prot_M-pyrifera_M_contig105416.1156.1 ID=prot_M-pyrifera_M_contig105416.1156.1|Name=mRNA_M-pyrifera_M_contig105416.1156.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=208bp MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELback to top mRNA from alignment at M-pyrifera_M_contig105416:3..635+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig105416.1156.1 ID=mRNA_M-pyrifera_M_contig105416.1156.1|Name=mRNA_M-pyrifera_M_contig105416.1156.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=633bp|location=Sequence derived from alignment at M-pyrifera_M_contig105416:3..635+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig105416:3..635+ >mRNA_M-pyrifera_M_contig105416.1156.1 ID=mRNA_M-pyrifera_M_contig105416.1156.1|Name=mRNA_M-pyrifera_M_contig105416.1156.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1248bp|location=Sequence derived from alignment at M-pyrifera_M_contig105416:3..635+ (Macrocystis pyrifera P11B4 male)back to top |