mRNA_M-pyrifera_M_contig100527.113.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100527.113.1
Unique NamemRNA_M-pyrifera_M_contig100527.113.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100527.113.1 vs. uniprot
Match: A0A137PA29_CONC2 (Uncharacterized protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PA29_CONC2)

HSP 1 Score: 59.7 bits (143), Expect = 2.080e-8
Identity = 31/89 (34.83%), Postives = 48/89 (53.93%), Query Frame = 1
Query:    7 IPSNARWREDIEALAREALDSRLPLHHF-MEDLARDARYGWMKDAESNRQRFFRWKVYSLRHGDSGTTWSMTPFRMDANGPYWVPPDVP 270
            IPS++R  E I       LD         ME  + D  + ++ D +S    +++WK++SLR GDS   W + PF++  NGP ++PP VP
Sbjct:  297 IPSDSRQLEVIHKTIERVLDLGNSFEQLIMERNSNDPNFAFLTDIDSPNHLYYKWKLHSLRQGDSMDEWRIQPFQLFENGPEFLPPPVP 385          
BLAST of mRNA_M-pyrifera_M_contig100527.113.1 vs. uniprot
Match: A0A8J9TQX3_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9TQX3_BRAAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.090e-8
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  118 YGWMKDAESNRQRFFRWKVYSLRHGDSGTTWSMTPFRMDANGPYWVPPDVP 270
            + ++ D +S    ++RWK+YS+ HG+S   WSM PFRM  +GP W+PP  P
Sbjct:  314 FNFLFDYQSPIHIYYRWKLYSIMHGESTKNWSMIPFRMYKDGPIWIPPTAP 364          
BLAST of mRNA_M-pyrifera_M_contig100527.113.1 vs. uniprot
Match: A0A024G2U8_9STRA (Uncharacterized protein n=7 Tax=Albugo candida TaxID=65357 RepID=A0A024G2U8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.450e-8
Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = 1
Query:    1 VNIPSNARWREDIEALAR------EALDSRLPLHHFMEDLARDARYGWMKD------AESNRQRFFRWKVYSLRHGDSGTTWSMTPFRMDANGPYWVPPDVP 270
            V IPS  R RE ++ LAR         +++L L       A +  + ++ +      A S    ++RW+VYS   GD+ + W   PFRM A+GP WVPP++P
Sbjct:  479 VTIPSEERLRERVDILARFVARNGACFETQLALRE-----ASNPDFAFLSESMDSTTAASPLYLYYRWRVYSFAVGDTSSQWLDEPFRMIADGPIWVPPEIP 575          
BLAST of mRNA_M-pyrifera_M_contig100527.113.1 vs. uniprot
Match: A0A6P7F4M0_DIAVI (U2 snRNP-associated SURP motif-containing protein-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7F4M0_DIAVI)

HSP 1 Score: 56.2 bits (134), Expect = 3.470e-7
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1
Query:  118 YGWMKDAESNRQRFFRWKVYSLRHGDSGTTWSMTPFRMDANGPYWVPPDVP 270
            Y ++ D  S+   ++RWKVYS+ HGDS T WS   FRM   G  W PP +P
Sbjct:  314 YNFLFDNHSSAHLYYRWKVYSILHGDSLTNWSTKNFRMFKGGSIWCPPVIP 364          
BLAST of mRNA_M-pyrifera_M_contig100527.113.1 vs. uniprot
Match: A0A8H7PE40_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PE40_MORIS)

HSP 1 Score: 56.2 bits (134), Expect = 3.470e-7
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 1
Query:  118 YGWMKDAESNRQRFFRWKVYSLRHGDSGTTWSMTPFRMDANGPYWVPPDVP 270
            Y ++ +  +    ++RWK+YSL  GDS   W   PF+M A GP+W+PP++P
Sbjct:  379 YSFLTNNNTPEHVYYRWKLYSLLQGDSKHHWRSEPFQMFAEGPWWIPPEIP 429          
BLAST of mRNA_M-pyrifera_M_contig100527.113.1 vs. uniprot
Match: A0A8K0C6S7_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0C6S7_9COLE)

HSP 1 Score: 53.9 bits (128), Expect = 2.270e-6
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 1
Query:  118 YGWMKDAESNRQRFFRWKVYSLRHGDSGTTWSMTPFRMDANGPYWVPPDVP 270
            Y ++ D  ++   ++RWK+YSL HGDS   WS   FRM  NG  W PP +P
Sbjct:  319 YQFLFDNRNSVHIYYRWKLYSLLHGDSQKNWSTKEFRMFKNGSIWCPPVIP 369          
BLAST of mRNA_M-pyrifera_M_contig100527.113.1 vs. uniprot
Match: A0A834J1K8_RHYFE (Uncharacterized protein n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834J1K8_RHYFE)

HSP 1 Score: 52.4 bits (124), Expect = 7.850e-6
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 1
Query:  118 YGWMKDAESNRQRFFRWKVYSLRHGDSGTTWSMTPFRMDANGPYWVPPDVP 270
            + ++ D +S    ++RWK++S+ HG+S   WSM PFRM   G  W+PP  P
Sbjct:  313 FNFLFDNKSPIHVYYRWKLFSILHGESTKHWSMKPFRMFKGGSIWIPPVAP 363          
BLAST of mRNA_M-pyrifera_M_contig100527.113.1 vs. uniprot
Match: A0A507FL61_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FL61_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 7.940e-6
Identity = 20/51 (39.22%), Postives = 29/51 (56.86%), Query Frame = 1
Query:  118 YGWMKDAESNRQRFFRWKVYSLRHGDSGTTWSMTPFRMDANGPYWVPPDVP 270
            Y ++ D       ++RWK++SL HGDS   W + PF M   G  W+PP +P
Sbjct:  406 YTFLSDHTHPEHHYYRWKLFSLLHGDSKLNWRLKPFCMYDEGALWIPPPIP 456          
BLAST of mRNA_M-pyrifera_M_contig100527.113.1 vs. uniprot
Match: A0A5K3F9H1_MESCO (Uncharacterized protein n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3F9H1_MESCO)

HSP 1 Score: 52.0 bits (123), Expect = 1.070e-5
Identity = 26/77 (33.77%), Postives = 42/77 (54.55%), Query Frame = 1
Query:   37 IEALAREALDSRLPLHHFMEDLARDARYGWMKDAESNRQRFFRWKVYSLRHGDSGTTWSMTPFRMDANGPYWVPPDV 267
            IE + RE       + H  E   ++ +Y ++ D ++    ++RWK++S+ HG+S   WS+  FRM   GP W PP V
Sbjct:  370 IEFVVREGPQFEAAIMHREE---KNPQYKFLFDYQTPEHLYYRWKLWSILHGESVNKWSLDEFRMYEGGPLWRPPPV 443          
BLAST of mRNA_M-pyrifera_M_contig100527.113.1 vs. uniprot
Match: A0A197KDS1_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KDS1_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 1.080e-5
Identity = 19/52 (36.54%), Postives = 33/52 (63.46%), Query Frame = 1
Query:  106 RDARYGWMKDAESNRQRFFRWKVYSLRHGDSGTTWSMTPFRMDANGPYWVPP 261
            R+  + ++ + +S    ++RW++YS++ GD+ T W   PF+M   GP WVPP
Sbjct:  367 RNPSFAFLINLKSPEHIYYRWRLYSMKQGDTATRWRTEPFKMVEGGPMWVPP 418          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100527.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A137PA29_CONC22.080e-834.83Uncharacterized protein n=1 Tax=Conidiobolus coron... [more]
A0A8J9TQX3_BRAAE2.090e-845.10Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
A0A024G2U8_9STRA5.450e-834.31Uncharacterized protein n=7 Tax=Albugo candida Tax... [more]
A0A6P7F4M0_DIAVI3.470e-747.06U2 snRNP-associated SURP motif-containing protein-... [more]
A0A8H7PE40_MORIS3.470e-741.18Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A8K0C6S7_9COLE2.270e-645.10Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A834J1K8_RHYFE7.850e-641.18Uncharacterized protein n=1 Tax=Rhynchophorus ferr... [more]
A0A507FL61_9FUNG7.940e-639.22Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
A0A5K3F9H1_MESCO1.070e-533.77Uncharacterized protein n=1 Tax=Mesocestoides cort... [more]
A0A197KDS1_9FUNG1.080e-536.54Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100527contigM-pyrifera_M_contig100527:83..352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog2880.D7FSA5
Preferred nameU2SURP
KEGG koko:K02878,ko:K12842
KEGG Pathwayko03010,ko03040,map03010,map03040
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005685,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017069,GO:0030532,GO:0030619,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035613,GO:0035614,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U2 snRNP-associated SURP
EggNOG OGsKOG0151@1,KOG0151@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03041
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.7701235-CDS-M-pyrifera_M_contig100527:82..3521622815501.7701235-CDS-M-pyrifera_M_contig100527:82..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100527 83..352 -
1692277440.2069583-CDS-M-pyrifera_M_contig100527:82..3521692277440.2069583-CDS-M-pyrifera_M_contig100527:82..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100527 83..352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100527.113.1prot_M-pyrifera_M_contig100527.113.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100527 83..352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100527.113.1

>prot_M-pyrifera_M_contig100527.113.1 ID=prot_M-pyrifera_M_contig100527.113.1|Name=mRNA_M-pyrifera_M_contig100527.113.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
VNIPSNARWREDIEALAREALDSRLPLHHFMEDLARDARYGWMKDAESNR
QRFFRWKVYSLRHGDSGTTWSMTPFRMDANGPYWVPPDVP
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mRNA from alignment at M-pyrifera_M_contig100527:83..352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100527.113.1 ID=mRNA_M-pyrifera_M_contig100527.113.1|Name=mRNA_M-pyrifera_M_contig100527.113.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig100527:83..352- (Macrocystis pyrifera P11B4 male)
GTGAACATTCCCTCCAACGCCCGATGGCGGGAGGACATCGAAGCGTTGGC GAGAGAGGCGCTGGACTCGCGGCTGCCGCTGCACCACTTCATGGAGGACC TGGCGAGAGATGCGAGGTATGGCTGGATGAAGGATGCAGAGTCGAACAGG CAGCGGTTCTTCCGCTGGAAGGTGTACTCGCTGCGCCATGGAGACTCAGG CACAACGTGGAGCATGACCCCCTTCCGCATGGACGCCAACGGCCCCTATT GGGTGCCCCCTGACGTCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100527:83..352-

>mRNA_M-pyrifera_M_contig100527.113.1 ID=mRNA_M-pyrifera_M_contig100527.113.1|Name=mRNA_M-pyrifera_M_contig100527.113.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig100527:83..352- (Macrocystis pyrifera P11B4 male)
GTGAACATTCCCTCCAACGCCCGATGGCGGGAGGACATCGAAGCGTTGGC
GAGAGAGGCGCTGGACTCGCGGCTGCCGCTGCACCACTTCATGGAGGACC
TGGCGAGAGATGCGAGGTATGGCTGGATGAAGGATGCAGAGTCGAACAGG
CAGCGGTTCTTCCGCTGGAAGGTGTACTCGCTGCGCCATGGAGACTCAGG
CACAACGTGGAGCATGACCCCCTTCCGCATGGACGCCAACGGCCCCTATT
GGGTGCCCCCTGACGTCCCCGTGAACATTCCCTCCAACGCCCGATGGCGG
GAGGACATCGAAGCGTTGGCGAGAGAGGCGCTGGACTCGCGGCTGCCGCT
GCACCACTTCATGGAGGACCTGGCGAGAGATGCGAGGTATGGCTGGATGA
AGGATGCAGAGTCGAACAGGCAGCGGTTCTTCCGCTGGAAGGTGTACTCG
CTGCGCCATGGAGACTCAGGCACAACGTGGAGCATGACCCCCTTCCGCAT
GGACGCCAACGGCCCCTATTGGGTGCCCCCTGACGTCCCC
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