mRNA_M-pyrifera_M_contig100521.111.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100521.111.1
Unique NamemRNA_M-pyrifera_M_contig100521.111.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig100521.111.1 vs. uniprot
Match: UPI00064518B4 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064518B4)

HSP 1 Score: 138 bits (347), Expect = 5.780e-35
Identity = 68/156 (43.59%), Postives = 104/156 (66.67%), Query Frame = 1 
Query:    1 LGEGGFGIVYKGTLG--GKVVAVKELTLQSGQTLDENL--FKEFQIEAYVQGLMDHPNCVKLYGLTSKPPRMVLEFVSGGDLCHKVLHVQPKPTVETLPWARRLSIAWDIAKGLHHMQTRDPPIVHRDLRSPNIFMTKSGK-----AYIGDFGLSR 441
            +G+GGFG+VYKG L   G+ +A+K L ++  Q +++ +  F+EFQ E ++   +DHPN V+L+GL   PPRMV+EFV  GDL H++   + +P    + W+ +  +  DIA+GLH+MQ+  PP++HRDLRSPNIF+    +     A + DFGLS+
Sbjct:  964 IGKGGFGLVYKGRLQRTGEPIAIKSLIIEPDQEMEDTIQKFREFQREVFIMSSLDHPNVVRLHGLMFNPPRMVMEFVPMGDLYHRLQRTKEEP----IKWSLKTRMMLDIARGLHYMQSLSPPVIHRDLRSPNIFLCSMDETAPVVAKVADFGLSQ 1115
[Close]
BLAST of mRNA_M-pyrifera_M_contig100521.111.1 vs. uniprot
Match: F0ZS49_DICPU (Non-specific serine/threonine protein kinase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZS49_DICPU)

HSP 1 Score: 137 bits (345), Expect = 1.080e-34
Identity = 76/156 (48.72%), Postives = 102/156 (65.38%), Query Frame = 1 
Query:    1 LGEGGFGIVYKGTL-GGKVVAVKELTLQSGQTLDENL---FKEFQIEAYVQGLMDHPNCVKLYGLTSKPPRMVLEFVSGGDLCHKVLHVQPKPTVETLPWARRLSIAWDIAKGLHHMQTRDPPIVHRDLRSPNIFMTKSGK-----AYIGDFGLSR 441
            +G+GGFG+V+KG L  G VVA+K L L+ G   DE L   F+EFQ E ++   ++HPN VKL+GL   PPRMV+EFV  GDL H++L          + W+ +L I  DIAKG+ +MQ ++PPIVHRDLRSPNIF+    +     A + DFGLS+
Sbjct:  991 IGKGGFGLVHKGRLKDGTVVAIKSLILEGG---DEELIEKFQEFQREVFIMSSLNHPNVVKLFGLMHNPPRMVMEFVPCGDLYHRLLEKN-----HPIKWSVKLRIMIDIAKGIEYMQNQNPPIVHRDLRSPNIFLVSLNEDAPVCAKVADFGLSQ 1138
[Close]
BLAST of mRNA_M-pyrifera_M_contig100521.111.1 vs. uniprot
Match: A0A7S4HR70_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HR70_9EUKA)

HSP 1 Score: 136 bits (343), Expect = 1.540e-34
Identity = 77/154 (50.00%), Postives = 102/154 (66.23%), Query Frame = 1 
Query:    1 LGEGGFGIVYKGTLGGKVVAVKELTLQSGQTLDEN---LFKEFQIEAYVQGLMDHPNCVKLYGLTSKPPRMVLEFVSGGDLCHKVLHVQPKPTVETLPWARRLSIAWDIAKGLHHMQTRDPPIVHRDLRSPNIFMTKSGK-----AYIGDFGLS 438
            +G GGFG VYKG+L  +VVA+KEL  +SG+  +EN   +F+EF  E Y    +DHPN V+LYG+T  P RMV+EFVSGGDL H +LH     + +TL    RL +A DIAKG+ ++Q   PPI+HRDLRSPNI +    +     A + DFGL+
Sbjct:   90 IGSGGFGKVYKGSLDDEVVAIKELLSKSGE--EENFAAMFEEFSREVYTMSSLDHPNLVRLYGITINPLRMVMEFVSGGDLYH-ILH-----SPQTLSLKLRLRVALDIAKGMRYLQNISPPIMHRDLRSPNILIEALDEEAEVIAKVADFGLA 235
[Close]
BLAST of mRNA_M-pyrifera_M_contig100521.111.1 vs. uniprot
Match: A0A8J4PS68_9MYCE (Non-specific serine/threonine protein kinase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PS68_9MYCE)

HSP 1 Score: 132 bits (332), Expect = 6.100e-33
Identity = 72/155 (46.45%), Postives = 100/155 (64.52%), Query Frame = 1 
Query:    1 LGEGGFGIVYKGTL-GGKVVAVKELTLQSGQTLDENL--FKEFQIEAYVQGLMDHPNCVKLYGLTSKPPRMVLEFVSGGDLCHKVLHVQPKPTVETLPWARRLSIAWDIAKGLHHMQTRDPPIVHRDLRSPNIFMTKSGK-----AYIGDFGLSR 441
            +G+G FG+V+KG L  G +VA+K L ++  +   E +  F+EFQ E ++   M+HPN VKLYGL   PPRMV+EFV GGDL ++V  ++         W  +L +  DIAKGL +MQ+ +PPIVHRDLRSPNIF+    +     A + DFGLS+
Sbjct:  997 IGQGAFGLVHKGKLKDGTIVAIKSLIVRDAEETQEKVEKFQEFQREVFIMSGMNHPNLVKLYGLMFNPPRMVMEFVPGGDLFNRVRALKFDENPVHHYWNLKLRMMLDIAKGLEYMQSLNPPIVHRDLRSPNIFIHSCNEDAPVVAKVADFGLSQ 1151
[Close]
BLAST of mRNA_M-pyrifera_M_contig100521.111.1 vs. uniprot
Match: D3BL41_POLPP (Non-specific serine/threonine protein kinase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BL41_POLPP)

HSP 1 Score: 130 bits (327), Expect = 2.860e-32
Identity = 76/155 (49.03%), Postives = 101/155 (65.16%), Query Frame = 1 
Query:    1 LGEGGFGIVYKGTL-GGKVVAVKELTLQSGQTLDENL--FKEFQIEAYVQGLMDHPNCVKLYGLTSKPPRMVLEFVSGGDLCHKVLHVQPKPTVETLPWARRLSIAWDIAKGLHHMQTRDPPIVHRDLRSPNIFMTKSGK-----AYIGDFGLSR 441
            +G+G FG+V+KG L  G+VVA+K L  Q GQ  +E +  F+EFQ E ++   M+HPN V+L+GL   PPRMV+EFV  GDL +K L        ET+ W  +  +  DIAKGL +MQ+  PPIVHRDLRSPNIF++   +     A I DFGLS+
Sbjct:  964 IGKGAFGLVHKGKLKSGQVVAIKSLLNQEGQETEEMIEKFQEFQREVFIMSGMNHPNLVRLHGLMFNPPRMVMEFVPLGDL-YKRLRCG-----ETMSWGFKTRLMLDIAKGLEYMQSLSPPIVHRDLRSPNIFISSLHEDAAVCAKIADFGLSQ 1112
[Close]
BLAST of mRNA_M-pyrifera_M_contig100521.111.1 vs. uniprot
Match: A0A151ZFK2_9MYCE (Non-specific serine/threonine protein kinase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZFK2_9MYCE)

HSP 1 Score: 130 bits (327), Expect = 2.870e-32
Identity = 76/155 (49.03%), Postives = 99/155 (63.87%), Query Frame = 1 
Query:    1 LGEGGFGIVYKGTL-GGKVVAVKELTLQSGQTLDENL--FKEFQIEAYVQGLMDHPNCVKLYGLTSKPPRMVLEFVSGGDLCHKVLHVQPKPTVETLPWARRLSIAWDIAKGLHHMQTRDPPIVHRDLRSPNIFM-----TKSGKAYIGDFGLSR 441
            +G+G FG+V+KG L  G VVA+K L L   Q  DE +  ++EFQ E ++   ++HPN VKL+GL   PPRMV+EFV GGDL +K L   P      + W  +L +  DIAKGL +MQ+  PPIVHRDLRSPNIF+     T    A + DFGLS+
Sbjct: 1037 IGKGAFGLVHKGKLKDGTVVAIKSLILSDSQESDEMVEKYQEFQREVFIMSGLNHPNLVKLFGLMFNPPRMVMEFVPGGDL-YKRLRSGP------MSWNLKLRLMLDIAKGLEYMQSLSPPIVHRDLRSPNIFIYSLDETAPVCAKVADFGLSQ 1184
[Close]
BLAST of mRNA_M-pyrifera_M_contig100521.111.1 vs. uniprot
Match: ROCO4_DICDI (Probable serine/threonine-protein kinase roco4 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=ROCO4_DICDI)

HSP 1 Score: 129 bits (324), Expect = 7.300e-32
Identity = 72/156 (46.15%), Postives = 98/156 (62.82%), Query Frame = 1 
Query:    1 LGEGGFGIVYKGTL--GGKVVAVKELTL--QSGQTLDENLFKEFQIEAYVQGLMDHPNCVKLYGLTSKPPRMVLEFVSGGDLCHKVLHVQPKPTVETLPWARRLSIAWDIAKGLHHMQTRDPPIVHRDLRSPNIFMTKSGK-----AYIGDFGLSR 441
            +G+GGFG+V+KG L     VVA+K L L    G+T     F+EFQ E ++   ++HPN VKLYGL   PPRMV+EFV  GDL H++L          + W+ +L +  DIA G+ +MQ ++PPIVHRDLRSPNIF+    +     A + DFGLS+
Sbjct: 1032 IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLD-----KAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ 1182
[Close]
BLAST of mRNA_M-pyrifera_M_contig100521.111.1 vs. uniprot
Match: UPI0006450F43 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450F43)

HSP 1 Score: 125 bits (315), Expect = 1.170e-30
Identity = 67/156 (42.95%), Postives = 97/156 (62.18%), Query Frame = 1 
Query:    1 LGEGGFGIVYKGTL--GGKVVAVKELTLQSGQTLDENL--FKEFQIEAYVQGLMDHPNCVKLYGLTSKPPRMVLEFVSGGDLCHKVLHVQPKPTVETLPWARRLSIAWDIAKGLHHMQTRDPPIVHRDLRSPNIFMTKSGK-----AYIGDFGLSR 441
            +G+GGFG+VYKG L   G+ +AVK   +   Q+ +E +  F+EFQ E ++   + HPN V+L+G    PPR+V+EFV  GDL H +     K    T+PW  +  +  D+A GLH+MQ+  PP++HRDLRSPNIF++   +       I DFGLS+
Sbjct: 1043 IGKGGFGLVYKGKLLRTGEQIAVKSSIVSPDQSNEETVQKFREFQREVFIMSSLSHPNIVRLHGYMFNPPRIVMEFVPKGDLYHYLK--DNKAAGMTIPWTLQTRMMLDLANGLHYMQSLTPPVIHRDLRSPNIFLSSLDEDAPVVVKIADFGLSQ 1196
[Close]
BLAST of mRNA_M-pyrifera_M_contig100521.111.1 vs. uniprot
Match: A0A6B2LAN4_9EUKA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAN4_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 1.360e-30
Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = 1 
Query:    1 LGEGGFGIVYKGTLGGKVVAVKELTLQSGQTLDENLFKEFQIEAYVQGLMDHPNCVKLYGLTSKPPRMVLEFVSGGDLCHKVLHVQPKPTVETLPWARRLSIAWDIAKGLHHMQTRDPPIVHRDLRSPNIFM-----TKSGKAYIGDFGLS 438
            +G GGF  V+KG L  +++A+K+L L+ G  +    F+EF+ E ++ G +DHPN VKL+G+T KP +M++EFV  G+L   +++       E L W  RL IA +IA G+ ++ + +PPIVHRDLRSPNIF+     T    A + DFGL+
Sbjct:   84 IGYGGFAQVFKGRLNNQLIAIKQLKLKPGDNMHSK-FEEFRHEVFMMGDLDHPNVVKLHGITLKPFQMIMEFVPLGNLNSCLMNPDMD---ELLSWEVRLKIAKEIAYGMRYLHSHNPPIVHRDLRSPNIFISSLDPTAKTHAKVADFGLA 230
[Close]
BLAST of mRNA_M-pyrifera_M_contig100521.111.1 vs. uniprot
Match: UPI000644F753 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F753)

HSP 1 Score: 124 bits (310), Expect = 5.570e-30
Identity = 68/156 (43.59%), Postives = 98/156 (62.82%), Query Frame = 1 
Query:    1 LGEGGFGIVYKGTL--GGKVVAVKELTLQSGQTLDENL--FKEFQIEAYVQGLMDHPNCVKLYGLTSKPPRMVLEFVSGGDLCHKVLHVQPKPTVETLPWARRLSIAWDIAKGLHHMQTRDPPIVHRDLRSPNIFMTKSGK-----AYIGDFGLSR 441
            +G+G FG+V+KG +  GG+V+A+K L LQ  Q  +E +  F+EFQ E ++   + HPN V+L GL   PPRMV+E++  GDL  ++   +P      + W  +  +  DIA+GL +MQ  +PPIVHRDLRSPNIF+    +     A I DFGLS+
Sbjct:  968 IGKGAFGLVHKGKMVKGGQVIAIKSLLLQENQETEEMVEKFQEFQREVFIMSDLKHPNLVRLLGLMFSPPRMVMEYIPMGDLYKRLRCGEP------MSWNLKTRVMLDIARGLEYMQALNPPIVHRDLRSPNIFICSLHEDAPVVAKIADFGLSQ 1117
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100521.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00064518B45.780e-3543.59hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0ZS49_DICPU1.080e-3448.72Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S4HR70_9EUKA1.540e-3450.00Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A8J4PS68_9MYCE6.100e-3346.45Non-specific serine/threonine protein kinase n=1 T... [more]
D3BL41_POLPP2.860e-3249.03Non-specific serine/threonine protein kinase n=1 T... [more]
A0A151ZFK2_9MYCE2.870e-3249.03Non-specific serine/threonine protein kinase n=1 T... [more]
ROCO4_DICDI7.300e-3246.15Probable serine/threonine-protein kinase roco4 n=1... [more]
UPI0006450F431.170e-3042.95hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6B2LAN4_9EUKA1.360e-3043.05Protein kinase domain-containing protein (Fragment... [more]
UPI000644F7535.570e-3043.59hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100521contigM-pyrifera_M_contig100521:140..583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue3e-30
Seed eggNOG ortholog5786.XP_003290237.1
Preferred nameroco4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0030587,GO:0031150,GO:0031153,GO:0031154,GO:0032502,GO:0035556,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051703,GO:0051704,GO:0051716,GO:0065007,GO:0071704,GO:0090702,GO:0099120,GO:0140096,GO:1901564
EggNOG free text desc.C-terminal of Roc, COR, domain
EggNOG OGs3X9QB@554915,COG0515@1,KOG0192@2759
COG Functional cat.T
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.6864882-CDS-M-pyrifera_M_contig100521:139..5831622815501.6864882-CDS-M-pyrifera_M_contig100521:139..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100521 140..583 +
1692277440.1470866-CDS-M-pyrifera_M_contig100521:139..5831692277440.1470866-CDS-M-pyrifera_M_contig100521:139..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100521 140..583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100521.111.1prot_M-pyrifera_M_contig100521.111.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100521 140..583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100521.111.1

>prot_M-pyrifera_M_contig100521.111.1 ID=prot_M-pyrifera_M_contig100521.111.1|Name=mRNA_M-pyrifera_M_contig100521.111.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
LGEGGFGIVYKGTLGGKVVAVKELTLQSGQTLDENLFKEFQIEAYVQGLM
DHPNCVKLYGLTSKPPRMVLEFVSGGDLCHKVLHVQPKPTVETLPWARRL
SIAWDIAKGLHHMQTRDPPIVHRDLRSPNIFMTKSGKAYIGDFGLSRV
back to top

mRNA from alignment at M-pyrifera_M_contig100521:140..583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100521.111.1 ID=mRNA_M-pyrifera_M_contig100521.111.1|Name=mRNA_M-pyrifera_M_contig100521.111.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig100521:140..583+ (Macrocystis pyrifera P11B4 male)
CTTGGAGAGGGCGGGTTTGGCATTGTCTACAAGGGCACCCTCGGTGGCAA
GGTTGTGGCGGTGAAGGAGCTTACCCTCCAGTCGGGCCAAACTTTGGACG
AGAACCTGTTCAAGGAGTTCCAGATTGAGGCCTACGTGCAAGGACTGATG
GACCACCCCAACTGTGTGAAGCTTTACGGCCTCACAAGCAAGCCTCCTCG
CATGGTTCTTGAGTTCGTGTCAGGTGGTGACCTTTGCCACAAGGTACTCC
ACGTGCAGCCCAAGCCCACTGTTGAGACGCTGCCGTGGGCTCGGCGGCTG
AGCATTGCGTGGGACATTGCCAAGGGCTTGCACCACATGCAAACTCGTGA
CCCTCCGATCGTTCACAGAGACCTGCGCTCCCCCAACATTTTCATGACCA
AGAGCGGCAAGGCCTACATCGGTGACTTCGGCCTTTCACGGGTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100521:140..583+

>mRNA_M-pyrifera_M_contig100521.111.1 ID=mRNA_M-pyrifera_M_contig100521.111.1|Name=mRNA_M-pyrifera_M_contig100521.111.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig100521:140..583+ (Macrocystis pyrifera P11B4 male)
CTTGGAGAGGGCGGGTTTGGCATTGTCTACAAGGGCACCCTCGGTGGCAA
GGTTGTGGCGGTGAAGGAGCTTACCCTCCAGTCGGGCCAAACTTTGGACG
AGAACCTGTTCAAGGAGTTCCAGATTGAGGCCTACGTGCAAGGACTGATG
GACCACCCCAACTGTGTGAAGCTTTACGGCCTCACAAGCAAGCCTCCTCG
CATGGTTCTTGAGTTCGTGTCAGGTGGTGACCTTTGCCACAAGGTACTCC
ACGTGCAGCCCAAGCCCACTGTTGAGACGCTGCCGTGGGCTCGGCGGCTG
AGCATTGCGTGGGACATTGCCAAGGGCTTGCACCACATGCAAACTCGTGA
CCCTCCGATCGTTCACAGAGACCTGCGCTCCCCCAACATTTTCATGACCA
AGAGCGGCAAGGCCTACATCGGTGACTTCGGCCTTTCACGGGTCCTTGGA
GAGGGCGGGTTTGGCATTGTCTACAAGGGCACCCTCGGTGGCAAGGTTGT
GGCGGTGAAGGAGCTTACCCTCCAGTCGGGCCAAACTTTGGACGAGAACC
TGTTCAAGGAGTTCCAGATTGAGGCCTACGTGCAAGGACTGATGGACCAC
CCCAACTGTGTGAAGCTTTACGGCCTCACAAGCAAGCCTCCTCGCATGGT
TCTTGAGTTCGTGTCAGGTGGTGACCTTTGCCACAAGGTACTCCACGTGC
AGCCCAAGCCCACTGTTGAGACGCTGCCGTGGGCTCGGCGGCTGAGCATT
GCGTGGGACATTGCCAAGGGCTTGCACCACATGCAAACTCGTGACCCTCC
GATCGTTCACAGAGACCTGCGCTCCCCCAACATTTTCATGACCAAGAGCG
GCAAGGCCTACATCGGTGACTTCGGCCTTTCACGGGTC
back to top