mRNA_M-pyrifera_M_contig100504.105.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100504.105.1
Unique NamemRNA_M-pyrifera_M_contig100504.105.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100504.105.1 vs. uniprot
Match: A0A7S4HU27_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HU27_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 1.810e-11
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 ETKRSAERGEIVLQKQMMIRGLDLNLVHPNRYFVNMGHLVRMTKD-GAPENRTFFLFNDMLLATKPDPHSKLFNYDGYVLIRGA 249
            E KR +E    V   Q  IRG+ +N+VHP R  +  G L R+  + GA E R F+L +DM+L+T P    KL  YDGY+LIRGA
Sbjct:  135 ERKRESENMGKVATIQQTIRGIGMNIVHPQRRLLKRGQLTRVNAETGAHETRYFYLLSDMMLSTIPT-EDKLRIYDGYILIRGA 217
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100504.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4HU27_9EUKA1.810e-1146.43Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100504contigM-pyrifera_M_contig100504:9..404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score65.5
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog7070.TC013717-PA
KEGG koko:K06082
KEGG Pathwayko04015,ko04520,map04015,map04520
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rho guanyl-nucleotide exchange factor activity. It is involved in the biological process described with regulation of Rho protein signal transduction
EggNOG OGs38EHJ@33154,3BFQ2@33208,3CV1Z@33213,3SK0K@50557,41W0G@6656,KOG3531@1,KOG3531@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_001120.2
COG Functional cat.T
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.312042-CDS-M-pyrifera_M_contig100504:8..4041622815501.312042-CDS-M-pyrifera_M_contig100504:8..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100504 9..404 +
1692277439.9350793-CDS-M-pyrifera_M_contig100504:8..4041692277439.9350793-CDS-M-pyrifera_M_contig100504:8..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100504 9..404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100504.105.1prot_M-pyrifera_M_contig100504.105.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100504 9..404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100504.105.1

>prot_M-pyrifera_M_contig100504.105.1 ID=prot_M-pyrifera_M_contig100504.105.1|Name=mRNA_M-pyrifera_M_contig100504.105.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
ETKRSAERGEIVLQKQMMIRGLDLNLVHPNRYFVNMGHLVRMTKDGAPEN
RTFFLFNDMLLATKPDPHSKLFNYDGYVLIRGAVVHTFPDKKKTIVIEFP
RINRKITYKADSQETKEKWVTWLKEALTDIDG
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mRNA from alignment at M-pyrifera_M_contig100504:9..404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100504.105.1 ID=mRNA_M-pyrifera_M_contig100504.105.1|Name=mRNA_M-pyrifera_M_contig100504.105.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig100504:9..404+ (Macrocystis pyrifera P11B4 male)
GAAACAAAGAGGAGTGCAGAGAGGGGGGAGATTGTCCTGCAGAAGCAGAT
GATGATCCGAGGCCTGGACCTGAACCTTGTACACCCAAACAGGTACTTCG
TCAACATGGGCCATCTCGTGAGGATGACCAAGGATGGCGCGCCTGAGAAC
CGCACGTTCTTCCTCTTCAACGACATGCTCCTCGCCACCAAGCCAGACCC
TCACTCCAAGCTCTTCAACTACGATGGATACGTCCTGATTCGAGGAGCGG
TGGTGCACACATTTCCCGACAAGAAGAAGACAATCGTGATCGAGTTCCCC
CGTATCAACAGGAAGATTACCTACAAGGCCGACTCCCAGGAAACCAAGGA
AAAGTGGGTGACCTGGCTCAAGGAAGCGCTCACTGACATTGACGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100504:9..404+

>mRNA_M-pyrifera_M_contig100504.105.1 ID=mRNA_M-pyrifera_M_contig100504.105.1|Name=mRNA_M-pyrifera_M_contig100504.105.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig100504:9..404+ (Macrocystis pyrifera P11B4 male)
GAAACAAAGAGGAGTGCAGAGAGGGGGGAGATTGTCCTGCAGAAGCAGAT
GATGATCCGAGGCCTGGACCTGAACCTTGTACACCCAAACAGGTACTTCG
TCAACATGGGCCATCTCGTGAGGATGACCAAGGATGGCGCGCCTGAGAAC
CGCACGTTCTTCCTCTTCAACGACATGCTCCTCGCCACCAAGCCAGACCC
TCACTCCAAGCTCTTCAACTACGATGGATACGTCCTGATTCGAGGAGCGG
TGGTGCACACATTTCCCGACAAGAAGAAGACAATCGTGATCGAGTTCCCC
CGTATCAACAGGAAGATTACCTACAAGGCCGACTCCCAGGAAACCAAGGA
AAAGTGGGTGACCTGGCTCAAGGAAGCGCTCACTGACATTGACGGCGAAA
CAAAGAGGAGTGCAGAGAGGGGGGAGATTGTCCTGCAGAAGCAGATGATG
ATCCGAGGCCTGGACCTGAACCTTGTACACCCAAACAGGTACTTCGTCAA
CATGGGCCATCTCGTGAGGATGACCAAGGATGGCGCGCCTGAGAACCGCA
CGTTCTTCCTCTTCAACGACATGCTCCTCGCCACCAAGCCAGACCCTCAC
TCCAAGCTCTTCAACTACGATGGATACGTCCTGATTCGAGGAGCGGTGGT
GCACACATTTCCCGACAAGAAGAAGACAATCGTGATCGAGTTCCCCCGTA
TCAACAGGAAGATTACCTACAAGGCCGACTCCCAGGAAACCAAGGAAAAG
TGGGTGACCTGGCTCAAGGAAGCGCTCACTGACATTGACGGC
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