Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 67.4 |
Seed ortholog evalue | 5.5e-09 |
Seed eggNOG ortholog | 2880.D7G231 |
Hectar predicted targeting category | other localisation |
EggNOG OGs | 2D17T@1,2SH13@2759 |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 1 |
Model size | 383 |
Cds size | 381 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815500.7463183-CDS-M-pyrifera_M_contig10047:2978..3359 | 1622815500.7463183-CDS-M-pyrifera_M_contig10047:2978..3359 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10047 2979..3359 + |
1692277439.6758516-CDS-M-pyrifera_M_contig10047:2978..3359 | 1692277439.6758516-CDS-M-pyrifera_M_contig10047:2978..3359 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10047 2979..3359 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig10047.99.1 >prot_M-pyrifera_M_contig10047.99.1 ID=prot_M-pyrifera_M_contig10047.99.1|Name=mRNA_M-pyrifera_M_contig10047.99.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
LGDLCLWRKDVAAEEDRENGTDSRPRITDTAADVQSSGQACTLPAAVLQG RGAEVLARLRAPVSQDNDREALRLLSEQCCARLTGIGLSCNDVEALREAS AGQGRESGSNSFVASKPRRLLCAAVRV back to topmRNA from alignment at M-pyrifera_M_contig10047:2979..3361+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig10047.99.1 ID=mRNA_M-pyrifera_M_contig10047.99.1|Name=mRNA_M-pyrifera_M_contig10047.99.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=383bp|location=Sequence derived from alignment at M-pyrifera_M_contig10047:2979..3361+ (Macrocystis pyrifera P11B4 male) CTCGGCGACTTGTGCCTGTGGCGAAAAGACGTGGCAGCAGAGGAGGACCG
TGAAAACGGCACTGACAGCCGGCCGCGCATCACTGATACTGCTGCCGATG
TCCAGAGTTCTGGCCAGGCGTGCACGCTTCCTGCTGCCGTTTTACAGGGA
CGAGGGGCTGAGGTTTTGGCGCGATTACGTGCCCCTGTTTCGCAGGACAA
CGATCGGGAAGCGCTGCGCCTGCTTTCAGAGCAGTGCTGCGCGCGGTTGA
CGGGGATTGGCCTCAGTTGTAATGACGTGGAGGCTTTGAGAGAAGCCTCG
GCCGGGCAGGGGAGGGAGAGCGGGTCGAACAGTTTCGTGGCGAGCAAGCC
TAGGCGCCTTCTCTGCGCGGCTGTGCGCGTCGG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig10047:2979..3361+ >mRNA_M-pyrifera_M_contig10047.99.1 ID=mRNA_M-pyrifera_M_contig10047.99.1|Name=mRNA_M-pyrifera_M_contig10047.99.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig10047:2979..3361+ (Macrocystis pyrifera P11B4 male) CTCGGCGACTTGTGCCTGTGGCGAAAAGACGTGGCAGCAGAGGAGGACCG TGAAAACGGCACTGACAGCCGGCCGCGCATCACTGATACTGCTGCCGATG TCCAGAGTTCTGGCCAGGCGTGCACGCTTCCTGCTGCCGTTTTACAGGGA CGAGGGGCTGAGGTTTTGGCGCGATTACGTGCCCCTGTTTCGCAGGACAA CGATCGGGAAGCGCTGCGCCTGCTTTCAGAGCAGTGCTGCGCGCGGTTGA CGGGGATTGGCCTCAGTTGTAATGACGTGGAGGCTTTGAGAGAAGCCTCG GCCGGGCAGGGGAGGGAGAGCGGGTCGAACAGTTTCGTGGCGAGCAAGCC TAGGCGCCTTCTCTGCGCGGCTGTGCGCGTCCTCGGCGACTTGTGCCTGT GGCGAAAAGACGTGGCAGCAGAGGAGGACCGTGAAAACGGCACTGACAGC CGGCCGCGCATCACTGATACTGCTGCCGATGTCCAGAGTTCTGGCCAGGC GTGCACGCTTCCTGCTGCCGTTTTACAGGGACGAGGGGCTGAGGTTTTGG CGCGATTACGTGCCCCTGTTTCGCAGGACAACGATCGGGAAGCGCTGCGC CTGCTTTCAGAGCAGTGCTGCGCGCGGTTGACGGGGATTGGCCTCAGTTG TAATGACGTGGAGGCTTTGAGAGAAGCCTCGGCCGGGCAGGGGAGGGAGA GCGGGTCGAACAGTTTCGTGGCGAGCAAGCCTAGGCGCCTTCTCTGCGCG GCTGTGCGCGTC back to top
|