mRNA_M-pyrifera_M_contig104568.983.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104568.983.1
Unique NamemRNA_M-pyrifera_M_contig104568.983.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig104568.983.1 vs. uniprot
Match: UPI001485E4DB (S8 family serine peptidase n=1 Tax=Roseovarius arcticus TaxID=2547404 RepID=UPI001485E4DB)

HSP 1 Score: 72.0 bits (175), Expect = 4.130e-12
Identity = 36/100 (36.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:   91 DALFLTLYNTGRLPLKSVVINKGEYPGDTMRRAGAWVG-NLSASSDVLLCDLNPRICSRSRQTAGSRELRRETTHLAGFKMGGSP-RWKASAGNRLIVPD 384
            + L+L+L+N+G L L++V +++  +    +R    + G +   S D ++CDLNP++CSR+   A   +L   T+H+ GF    SP RW+ S GN ++VPD
Sbjct:   45 ETLYLSLFNSGNLTLRTVKMDQSPFVEHVLRNEKLFFGAHFPQSIDAMMCDLNPKLCSRTLTGAPQSQLSDLTSHVGGF--AASPGRWRTSVGNTIVVPD 142
[Close]
BLAST of mRNA_M-pyrifera_M_contig104568.983.1 vs. uniprot
Match: UPI00110F4911 (S8 family serine peptidase n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI00110F4911)

HSP 1 Score: 52.8 bits (125), Expect = 2.210e-5
Identity = 32/100 (32.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:   97 LFLTLYNTGRLPLKSVVINKGEYPGDTMRRAGAWVGNLSASS-DVLLCDLNPRICSRSRQTAGSRELRRETTHLAGFKMGGSPRWKASAG-NRLIVPDIL 390
            ++LTLYN+ RL +KSV  ++       +R+   + G    +  D ++CDLN  IC+R R  A   + +  T++++GF +    RW+     N+L VPD++
Sbjct:   92 IYLTLYNSKRLSVKSVETSEHTVEA-VLRKERLFYGKFFPTEIDSMICDLNSDICNRERTEATGEQRQSLTSNVSGF-LPSETRWRLEPPVNKLWVPDVV 189
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104568.983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001485E4DB4.130e-1236.00S8 family serine peptidase n=1 Tax=Roseovarius arc... [more]
UPI00110F49112.210e-532.00S8 family serine peptidase n=1 Tax=unclassified Br... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104568contigM-pyrifera_M_contig104568:196..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.6
Seed ortholog evalue9.2e-09
Seed eggNOG ortholog1461694.ATO9_10475
KEGG koko:K01387,ko:K14645
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the peptidase S8 family
EggNOG OGsCOG1404@1,COG1404@2
EC3.4.24.3
COG Functional cat.O
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko02042,ko03110
Exons1
Model size390
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.253288-CDS-M-pyrifera_M_contig104568:195..5701622815553.253288-CDS-M-pyrifera_M_contig104568:195..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104568 196..570 -
1692277460.879153-CDS-M-pyrifera_M_contig104568:195..5701692277460.879153-CDS-M-pyrifera_M_contig104568:195..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104568 196..570 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.2639203-UTR-M-pyrifera_M_contig104568:570..5851622815553.2639203-UTR-M-pyrifera_M_contig104568:570..585Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104568 571..585 -
1692277460.8953903-UTR-M-pyrifera_M_contig104568:570..5851692277460.8953903-UTR-M-pyrifera_M_contig104568:570..585Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104568 571..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104568.983.1prot_M-pyrifera_M_contig104568.983.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104568 196..570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104568.983.1

>prot_M-pyrifera_M_contig104568.983.1 ID=prot_M-pyrifera_M_contig104568.983.1|Name=mRNA_M-pyrifera_M_contig104568.983.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MLAAQNAEITWSARAASDSDATSAQDALFLTLYNTGRLPLKSVVINKGEY
PGDTMRRAGAWVGNLSASSDVLLCDLNPRICSRSRQTAGSRELRRETTHL
AGFKMGGSPRWKASAGNRLIVPDIL
back to top

mRNA from alignment at M-pyrifera_M_contig104568:196..585-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104568.983.1 ID=mRNA_M-pyrifera_M_contig104568.983.1|Name=mRNA_M-pyrifera_M_contig104568.983.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig104568:196..585- (Macrocystis pyrifera P11B4 male)
TCCGAACCGTCCGCCATGCTGGCAGCACAGAATGCGGAGATCACCTGGAG
CGCTCGCGCCGCCAGTGACAGCGACGCAACATCGGCGCAGGACGCGCTTT
TCCTGACGCTCTACAACACCGGACGCCTTCCGCTGAAGAGCGTCGTGATC
AACAAGGGTGAATATCCGGGCGACACGATGCGACGGGCCGGTGCGTGGGT
TGGAAATCTCAGCGCTTCATCGGATGTCCTCCTTTGCGATCTCAATCCGC
GGATTTGCAGCCGCTCGCGCCAGACCGCGGGCAGCAGGGAACTGCGTCGG
GAAACAACACATCTGGCAGGATTTAAAATGGGCGGGTCGCCTCGCTGGAA
AGCGTCGGCCGGTAACAGGTTGATCGTGCCGGACATCCTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104568:196..585-

>mRNA_M-pyrifera_M_contig104568.983.1 ID=mRNA_M-pyrifera_M_contig104568.983.1|Name=mRNA_M-pyrifera_M_contig104568.983.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig104568:196..585- (Macrocystis pyrifera P11B4 male)
ATGCTGGCAGCACAGAATGCGGAGATCACCTGGAGCGCTCGCGCCGCCAG
TGACAGCGACGCAACATCGGCGCAGGACGCGCTTTTCCTGACGCTCTACA
ACACCGGACGCCTTCCGCTGAAGAGCGTCGTGATCAACAAGGGTGAATAT
CCGGGCGACACGATGCGACGGGCCGGTGCGTGGGTTGGAAATCTCAGCGC
TTCATCGGATGTCCTCCTTTGCGATCTCAATCCGCGGATTTGCAGCCGCT
CGCGCCAGACCGCGGGCAGCAGGGAACTGCGTCGGGAAACAACACATCTG
GCAGGATTTAAAATGGGCGGGTCGCCTCGCTGGAAAGCGTCGGCCGGTAA
CAGGTTGATCGTGCCGGACATCCTTATGCTGGCAGCACAGAATGCGGAGA
TCACCTGGAGCGCTCGCGCCGCCAGTGACAGCGACGCAACATCGGCGCAG
GACGCGCTTTTCCTGACGCTCTACAACACCGGACGCCTTCCGCTGAAGAG
CGTCGTGATCAACAAGGGTGAATATCCGGGCGACACGATGCGACGGGCCG
GTGCGTGGGTTGGAAATCTCAGCGCTTCATCGGATGTCCTCCTTTGCGAT
CTCAATCCGCGGATTTGCAGCCGCTCGCGCCAGACCGCGGGCAGCAGGGA
ACTGCGTCGGGAAACAACACATCTGGCAGGATTTAAAATGGGCGGGTCGC
CTCGCTGGAAAGCGTCGGCCGGTAACAGGTTGATCGTGCCGGACATCCTT
back to top