mRNA_M-pyrifera_M_contig100445.95.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100445.95.1
Unique NamemRNA_M-pyrifera_M_contig100445.95.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100445.95.1 vs. uniprot
Match: A0A7S0W350_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W350_9CRYP)

HSP 1 Score: 178 bits (451), Expect = 4.310e-54
Identity = 77/115 (66.96%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 GRSCAEKWIDYSVFGHQVVVHFAGEDYDGKTRDCFNPVDGDEVPVPHFGVVLPEKEWHDLAERLKAADTKFVIEPHLRFKGRPGEQYTMFFRDPSNNNLEFKAMTNPDNLFARYE 345
            GR    KW+DYS+ GHQ+V H+AG DY  K  D +NPVDGDEVPVPHFG+ L E++WH LA +++ A  KF++EPHLRFKG PGEQ+TMFF+DPS NNLEFKAMTNP+NLFARY+
Sbjct:  127 GRIAPGKWVDYSLNGHQIVCHWAGNDY--KCVDYYNPVDGDEVPVPHFGLALEEEQWHALAAKVRDAGIKFIVEPHLRFKGMPGEQWTMFFKDPSGNNLEFKAMTNPENLFARYD 239          
BLAST of mRNA_M-pyrifera_M_contig100445.95.1 vs. uniprot
Match: A0A5A8DDG7_CAFRO (VOC domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDG7_CAFRO)

HSP 1 Score: 173 bits (439), Expect = 1.730e-53
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 GRSCAEKWIDYSVFGHQVVVHFAGEDYDGKTRDCFNPVDGDEVPVPHFGVVLPEKEWHDLAERLKAADTKFVIEPHLRFKGRPGEQYTMFFRDPSNNNLEFKAMTNPDNLFARY 342
            GRS A KW DYS+FGHQ+VVH+ GE Y G   + FNPVDGDEVPVPHFG  L  +++H LA+RL+   TKF+IEPHLRFKG+PGEQYTMFF+DPS N+LEFKAMTNP+NLFA+Y
Sbjct:   37 GRSSA-KWQDYSLFGHQLVVHYVGEAYRGP--EWFNPVDGDEVPVPHFGAALSVEDFHALAKRLRQHKTKFIIEPHLRFKGQPGEQYTMFFKDPSGNSLEFKAMTNPNNLFAKY 147          
BLAST of mRNA_M-pyrifera_M_contig100445.95.1 vs. uniprot
Match: A0A5A8CKG4_CAFRO (VOC domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKG4_CAFRO)

HSP 1 Score: 173 bits (439), Expect = 8.530e-53
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 GRSCAEKWIDYSVFGHQVVVHFAGEDYDGKTRDCFNPVDGDEVPVPHFGVVLPEKEWHDLAERLKAADTKFVIEPHLRFKGRPGEQYTMFFRDPSNNNLEFKAMTNPDNLFARY 342
            GRS A KW DYS+FGHQ+VVH+ GE Y G   + FNPVDGDEVPVPHFG  L  +++H LA+RL+   TKF+IEPHLRFKG+PGEQYTMFF+DPS N+LEFKAMTNP+NLFA+Y
Sbjct:   88 GRSSA-KWQDYSLFGHQLVVHYVGEAYRGP--EWFNPVDGDEVPVPHFGAALSVEDFHALAKRLRQHKTKFIIEPHLRFKGQPGEQYTMFFKDPSGNSLEFKAMTNPNNLFAKY 198          
BLAST of mRNA_M-pyrifera_M_contig100445.95.1 vs. uniprot
Match: A0A7S3V923_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V923_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.110e-52
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = 1
Query:    1 GRSCAEKWIDYSVFGHQVVVHFAGEDYDGKTRDCFNPVDGDEVPVPHFGVVLPEKEWHDLAERLKAADTKFVIEPHLRFKGRPGEQYTMFFRDPSNNNLEFKAMTNPDNLFARY 342
            GRS +EKW DYS+ GHQ+V H+AG DY  + +D FNPVDGDE+PVPHFGV + E+E+H +A+RLK A  KF++EPHLRFKG+PGEQ+TMFF+DPS NNLEFKAMT  +NLFA+Y
Sbjct:  118 GRS-SEKWQDYSLHGHQIVCHWAGNDY--RCKDYFNPVDGDEIPVPHFGVAMTEEEFHVMADRLKEAGIKFIVEPHLRFKGQPGEQWTMFFKDPSGNNLEFKAMTTIENLFAKY 228          
BLAST of mRNA_M-pyrifera_M_contig100445.95.1 vs. uniprot
Match: A0A7S4DHW6_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S4DHW6_9EUKA)

HSP 1 Score: 170 bits (431), Expect = 7.800e-52
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 GRSCAEKWIDYSVFGHQVVVHFAGEDYDGKTRDCFNPVDGDEVPVPHFGVVLPEKEWHDLAERLKAADTKFVIEPHLRFKGRPGEQYTMFFRDPSNNNLEFKAMTNPDNLFARYE 345
            GR   +KW DYS+ GHQ+V H+ G +Y  +  D +NPVDGDEVPVPHFG+ L E ++HDLAER+  A  KF+IEPH RF G+PGEQ+TMFF+DPS NNLEFKAMT PDNLFARY+
Sbjct:   67 GRRDQDKWQDYSINGHQLVCHWVGTEY--RCPDFYNPVDGDEVPVPHFGLALTEPQFHDLAERVSKAGVKFIIEPHKRFHGKPGEQWTMFFKDPSGNNLEFKAMTTPDNLFARYD 179          
BLAST of mRNA_M-pyrifera_M_contig100445.95.1 vs. uniprot
Match: B7G741_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G741_PHATC)

HSP 1 Score: 170 bits (431), Expect = 9.980e-52
Identity = 75/114 (65.79%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 GRSCAEKWIDYSVFGHQVVVHFAGEDYDGKTRDCFNPVDGDEVPVPHFGVVLPEKEWHDLAERLKAADTKFVIEPHLRFKGRPGEQYTMFFRDPSNNNLEFKAMTNPDNLFARY 342
            GRS +EKW DYS+ GHQ+V H+AG DY  + +D +NPVDGDEVPVPH G+ L  +++H+LAER+++    F+IEPHLRFKG PGEQYTMFF+DPS NNLEFKAMT+P+NLFA+Y
Sbjct:   76 GRS-SEKWQDYSLHGHQIVAHWAGNDY--RCQDYYNPVDGDEVPVPHVGLALTVEQFHELAERVRSKGVNFIIEPHLRFKGMPGEQYTMFFKDPSGNNLEFKAMTHPENLFAKY 186          
BLAST of mRNA_M-pyrifera_M_contig100445.95.1 vs. uniprot
Match: A0A1Z5KFB7_FISSO (VOC domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFB7_FISSO)

HSP 1 Score: 170 bits (431), Expect = 1.630e-51
Identity = 76/114 (66.67%), Postives = 94/114 (82.46%), Query Frame = 1
Query:    1 GRSCAEKWIDYSVFGHQVVVHFAGEDYDGKTRDCFNPVDGDEVPVPHFGVVLPEKEWHDLAERLKAADTKFVIEPHLRFKGRPGEQYTMFFRDPSNNNLEFKAMTNPDNLFARY 342
            GRS +EKW DYS+ GHQ+V H+ G DY  +  D +NPVDGDEVPVPH+G+ L  +++H LAER++ A  +F+IEPHLRFKG PGEQYTMFF+DPS NNLEFKAMT+PDNLFA+Y
Sbjct:   93 GRS-SEKWQDYSLHGHQIVAHWVGNDY--RCPDFYNPVDGDEVPVPHYGLALTVEQFHALAERVRKAGIQFIIEPHLRFKGMPGEQYTMFFKDPSGNNLEFKAMTHPDNLFAKY 203          
BLAST of mRNA_M-pyrifera_M_contig100445.95.1 vs. uniprot
Match: A0A8J5XHJ2_DIALT (VOC domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XHJ2_DIALT)

HSP 1 Score: 166 bits (421), Expect = 2.740e-50
Identity = 73/114 (64.04%), Postives = 93/114 (81.58%), Query Frame = 1
Query:    1 GRSCAEKWIDYSVFGHQVVVHFAGEDYDGKTRDCFNPVDGDEVPVPHFGVVLPEKEWHDLAERLKAADTKFVIEPHLRFKGRPGEQYTMFFRDPSNNNLEFKAMTNPDNLFARY 342
            GR+ ++KWID+++ GHQ+V H+ G+DY  + RD +NPVDGDEVPVPHFG+ L  ++W  LAER++AA   FV+EP LRF+G PGEQYTMFF+DPS NNLEFKAMT P NLFA+Y
Sbjct:   70 GRT-SDKWIDFALHGHQIVAHWVGDDY--RCRDFYNPVDGDEVPVPHFGLALTVEQWRTLAERVRAARVPFVVEPTLRFEGMPGEQYTMFFKDPSGNNLEFKAMTRPHNLFAKY 180          
BLAST of mRNA_M-pyrifera_M_contig100445.95.1 vs. uniprot
Match: L1IUP9_GUITC (VOC domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IUP9_GUITC)

HSP 1 Score: 167 bits (423), Expect = 7.930e-50
Identity = 75/115 (65.22%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 GRSCAEKWIDYSVFGHQVVVHFAGEDYDGKTRDCFNPVDGDEVPVPHFGVVLPEKEWHDLAERLKAADTKFVIEPHLRFKGRPGEQYTMFFRDPSNNNLEFKAMTNPDNLFARYE 345
            GRS   KWID+S+FGHQ+V HF G+DY  K  + FNPV GDEVPVPHFG+VL ++ +H LAERL  A  +FVI P LRF+G+PGEQ+TMF +DPSNN LEFKAMT+P+NLFA+Y+
Sbjct:  128 GRSSPGKWIDFSLFGHQLVCHFVGKDY--KAPEFFNPVGGDEVPVPHFGLVLEKEAFHSLAERLDKAGVQFVIRPQLRFQGQPGEQWTMFLKDPSNNALEFKAMTHPENLFAKYQ 240          
BLAST of mRNA_M-pyrifera_M_contig100445.95.1 vs. uniprot
Match: A0A7S1Z3P6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z3P6_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.130e-49
Identity = 75/113 (66.37%), Postives = 94/113 (83.19%), Query Frame = 1
Query:    1 GRSCAEKWIDYSVFGHQVVVHFAGEDYDGKTRDCFNPVDGDEVPVPHFGVVLPEKEWHDLAERLKAADTKFVIEPHLRFKGRPGEQYTMFFRDPSNNNLEFKAMTNPDNLFAR 339
            GRS +EKW DYS+ GHQ+V H+AG DY  + +D +NPVDGD+VPVPH G+ L E+++H LAER++AA  +F+IEPHLRFKG PGEQ+TMFF+DPS NNLEFKAMT  DNLFA+
Sbjct:  121 GRS-SEKWQDYSLHGHQIVCHWAGNDY--RCQDYYNPVDGDDVPVPHMGLALTEEQFHVLAERVRAAGIEFIIEPHLRFKGEPGEQWTMFFKDPSGNNLEFKAMTTIDNLFAK 230          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100445.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0W350_9CRYP4.310e-5466.96Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A5A8DDG7_CAFRO1.730e-5370.18VOC domain-containing protein n=1 Tax=Cafeteria ro... [more]
A0A5A8CKG4_CAFRO8.530e-5370.18VOC domain-containing protein n=2 Tax=Cafeteria ro... [more]
A0A7S3V923_9STRA2.110e-5267.54Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4DHW6_9EUKA7.800e-5265.22Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]
B7G741_PHATC9.980e-5265.79Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5KFB7_FISSO1.630e-5166.67VOC domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A8J5XHJ2_DIALT2.740e-5064.04VOC domain-containing protein n=1 Tax=Diacronema l... [more]
L1IUP9_GUITC7.930e-5065.22VOC domain-containing protein n=1 Tax=Guillardia t... [more]
A0A7S1Z3P6_9STRA2.130e-4966.37Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100445contigM-pyrifera_M_contig100445:289..645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.5
Seed ortholog evalue3e-41
Seed eggNOG ortholog227086.JGI_V11_54470
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
EggNOG OGs2RY6W@2759,COG3565@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.569612-CDS-M-pyrifera_M_contig100445:288..6451622815500.569612-CDS-M-pyrifera_M_contig100445:288..645Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100445 289..645 +
1692277439.6072474-CDS-M-pyrifera_M_contig100445:288..6451692277439.6072474-CDS-M-pyrifera_M_contig100445:288..645Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100445 289..645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100445.95.1prot_M-pyrifera_M_contig100445.95.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100445 289..645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100445.95.1

>prot_M-pyrifera_M_contig100445.95.1 ID=prot_M-pyrifera_M_contig100445.95.1|Name=mRNA_M-pyrifera_M_contig100445.95.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
GRSCAEKWIDYSVFGHQVVVHFAGEDYDGKTRDCFNPVDGDEVPVPHFGV
VLPEKEWHDLAERLKAADTKFVIEPHLRFKGRPGEQYTMFFRDPSNNNLE
FKAMTNPDNLFARYEEDS*
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mRNA from alignment at M-pyrifera_M_contig100445:289..645+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100445.95.1 ID=mRNA_M-pyrifera_M_contig100445.95.1|Name=mRNA_M-pyrifera_M_contig100445.95.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig100445:289..645+ (Macrocystis pyrifera P11B4 male)
GGTCGATCATGTGCTGAGAAGTGGATTGATTACAGTGTATTCGGACACCA GGTGGTAGTTCATTTTGCTGGTGAAGATTACGATGGGAAAACGCGTGATT GCTTCAACCCTGTGGATGGTGACGAAGTTCCCGTTCCACATTTTGGTGTC GTCTTGCCAGAGAAAGAATGGCATGACCTTGCAGAGCGGCTCAAGGCTGC AGACACCAAGTTCGTGATCGAGCCACATTTGCGTTTCAAGGGGCGTCCAG GAGAACAGTACACCATGTTTTTCCGAGACCCGTCCAACAATAACCTCGAG TTCAAGGCCATGACAAACCCAGACAACCTCTTTGCAAGATACGAAGAGGA TTCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100445:289..645+

>mRNA_M-pyrifera_M_contig100445.95.1 ID=mRNA_M-pyrifera_M_contig100445.95.1|Name=mRNA_M-pyrifera_M_contig100445.95.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig100445:289..645+ (Macrocystis pyrifera P11B4 male)
GGTCGATCATGTGCTGAGAAGTGGATTGATTACAGTGTATTCGGACACCA
GGTGGTAGTTCATTTTGCTGGTGAAGATTACGATGGGAAAACGCGTGATT
GCTTCAACCCTGTGGATGGTGACGAAGTTCCCGTTCCACATTTTGGTGTC
GTCTTGCCAGAGAAAGAATGGCATGACCTTGCAGAGCGGCTCAAGGCTGC
AGACACCAAGTTCGTGATCGAGCCACATTTGCGTTTCAAGGGGCGTCCAG
GAGAACAGTACACCATGTTTTTCCGAGACCCGTCCAACAATAACCTCGAG
TTCAAGGCCATGACAAACCCAGACAACCTCTTTGCAAGATACGAAGAGGA
TTCGTAAGGTCGATCATGTGCTGAGAAGTGGATTGATTACAGTGTATTCG
GACACCAGGTGGTAGTTCATTTTGCTGGTGAAGATTACGATGGGAAAACG
CGTGATTGCTTCAACCCTGTGGATGGTGACGAAGTTCCCGTTCCACATTT
TGGTGTCGTCTTGCCAGAGAAAGAATGGCATGACCTTGCAGAGCGGCTCA
AGGCTGCAGACACCAAGTTCGTGATCGAGCCACATTTGCGTTTCAAGGGG
CGTCCAGGAGAACAGTACACCATGTTTTTCCGAGACCCGTCCAACAATAA
CCTCGAGTTCAAGGCCATGACAAACCCAGACAACCTCTTTGCAAGATACG
AAGAGGATTCGTAA
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