mRNA_M-pyrifera_M_contig100002.9.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100002.9.1
Unique NamemRNA_M-pyrifera_M_contig100002.9.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100002.9.1 vs. uniprot
Match: I1GKZ1_BRADI (Poly(ADP-ribose) glycohydrolase n=3 Tax=Brachypodium distachyon TaxID=15368 RepID=I1GKZ1_BRADI)

HSP 1 Score: 75.9 bits (185), Expect = 3.260e-13
Identity = 55/150 (36.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    1 STPLCPLRV-EAGTEWDMFGVEGAIGVNFANRFLGGGVLRFGAVQEEVLVLQCPEIVAVMTMMGKMTDAEAMQILNLRRFNKTSGYGKNIQPIPPSPSSSSPTPP------QTISITCIDATKFPAKHSPLECTHASILRELRKAMAGFI 429
            STPLCP RV  +G   D    + A+ V+FAN++LGGG L  G VQEE+  +  PE++  M  M  M D EA++I+   RF++  GYG + + +         T P      +   I  IDA   P K   L+   + +LRE+ KA+ GF+
Sbjct:  241 STPLCPFRVISSGLIEDE--EQEALEVDFANKYLGGGALSRGCVQEEIRFMINPELIVGMLFMASMEDNEAIEIVGAERFSQYMGYGSSFRFV----GDYLDTKPLDALGRRKTRILAIDALDCPTK---LQYETSGLLREVNKALCGFL 381          
BLAST of mRNA_M-pyrifera_M_contig100002.9.1 vs. uniprot
Match: A0A0D8XX85_DICVI (Poly(ADP-ribose) glycohydrolase n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8XX85_DICVI)

HSP 1 Score: 74.7 bits (182), Expect = 3.330e-13
Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 1
Query:   61 EGAIGVNFANRFLGGGVLRFGAVQEEVLVLQCPEIVAVMTMMGKMTDAEAMQILNLRRFNKTSGYGKNIQPIPPSPSSSSPTPPQTISITC----IDATKFPAKHSPLECTHASILRELRKAMAGFIQRGEE 444
             G + V+FAN ++GGGVL +GAVQEE+  L CPE++    +  KM   E + I+  +R +   GYG+ +Q   P     S +  +   + C    +DAT F +    ++    SI REL KA  GF+ RG+E
Sbjct:   16 NGCLQVDFANEYIGGGVLNWGAVQEEIRFLICPEMIVSCLLCEKMGPLEVIHIVGAQRHSSYIGYGETLQ-WAPYEEYGSESRDKFCRVKCEVVAMDATLFKSSSKWIQYDKMSIDRELNKAYTGFMSRGKE 146          
BLAST of mRNA_M-pyrifera_M_contig100002.9.1 vs. uniprot
Match: A0A812WA90_SYMPI (Poly(ADP-ribose) glycohydrolase n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812WA90_SYMPI)

HSP 1 Score: 75.9 bits (185), Expect = 3.470e-13
Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = 1
Query:    1 STPLCPLRV-EAGTEWDMFGVEGAIGVNFANRFLGGGVLRFGAVQEEVLVLQCPEIVAVMTMMGKMTDAEAMQILNLRRFNKTSGYGKNIQPI----PPSPSSSSPTPPQTISITCIDATKFPAKHSPL--ECTHASILRELRKAMAGF 426
            S PL P++V + G   +     G +  +FANR+LGGGVL  G VQEE+    CPE+ A M +   M D EA+ I+   +F+  SGYG++++       P+P     T    ++IT +DA  F  K +PL  +     +LREL KA   F
Sbjct:  125 SQPLLPMQVADQGIGLEDESGRGCLHADFANRYLGGGVLVGGCVQEEIRFSICPELCAAMLVCPYMLDHEAITIVGGEQFSGYSGYGRSLEYAGDFRDPTPRDEDGT--VLVAITAMDAIDFRGKAAPLRQQLEDNLLLRELEKAAVAF 271          
BLAST of mRNA_M-pyrifera_M_contig100002.9.1 vs. uniprot
Match: A0A8B8HF59_9NEOP (Poly(ADP-ribose) glycohydrolase n=3 Tax=Vanessa TaxID=42274 RepID=A0A8B8HF59_9NEOP)

HSP 1 Score: 75.5 bits (184), Expect = 4.710e-13
Identity = 52/140 (37.14%), Postives = 74/140 (52.86%), Query Frame = 1
Query:   19 LRVEAGTEWDMFGVEGAIGVNFANRFLGGGVLRFGAVQEEVLVLQCPEIVAVMTMMGKMTDAEAMQILNLRRFNKTSGYGKNIQ----PIPPSPSSSSPTPPQTISITCIDATKFPAKHSPLECTHASILRELRKAMAGF 426
            LRV A     +    G I V+FAN+FLGGGVL +G+VQEE+  + CPE++  M     +   EA+ I+   +++K SGYG + Q     +  +P  SS    +  ++  IDA  F  K    E    +I REL KA  GF
Sbjct:  298 LRVHADATSTIEDAHGLIQVDFANKFLGGGVLNYGSVQEEIRFMICPELMISMLFTEALRPNEALMIIGCEQYSKYSGYGHSFQWAGEHVDATPRDSSGR--RRCAVLAIDAQPFSNKSQ--EYKKEAITRELDKAWVGF 433          
BLAST of mRNA_M-pyrifera_M_contig100002.9.1 vs. uniprot
Match: UPI001E271F5D (poly(ADP-ribose) glycohydrolase n=1 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E271F5D)

HSP 1 Score: 75.1 bits (183), Expect = 6.350e-13
Identity = 51/146 (34.93%), Postives = 74/146 (50.68%), Query Frame = 1
Query:    1 STPLCPLRVEAGTEWDMFGVEGAIGVNFANRFLGGGVLRFGAVQEEVLVLQCPEIVAVMTMMGKMTDAEAMQILNLRRFNKTSGYGKNIQ----PIPPSPSSSSPTPPQTISITCIDATKFPAKHSPLECTHASILRELRKAMAGF 426
            S  L  LRV       +    G I V+FANR+LGGGVL +G VQEE+  + CPE++  M     +   EA+ I+   +++K SGYG + Q     +  +P   S    +  S+  IDA   P++    E    ++ REL KA  GF
Sbjct:  271 SAALAALRVHVDAAGTIEDAHGLIQVDFANRYLGGGVLGYGCVQEEIRFMICPELIITMLFTEALKSNEALMIIGCEQYSKYSGYGHSFQWAGEYVDRTPYDCSGR--RRCSVLAIDA--LPSRGKVQEYRIETVTRELNKAWVGF 412          
BLAST of mRNA_M-pyrifera_M_contig100002.9.1 vs. uniprot
Match: UPI001F135B95 (poly(ADP-ribose) glycohydrolase-like n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F135B95)

HSP 1 Score: 75.1 bits (183), Expect = 6.410e-13
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   10 LCPLRVEAGTEWDMFGVEGAIGVNFANRFLGGGVLRFGAVQEEVLVLQCPEIVAVMTMMGKMTDAEAMQILNLRRFNKTSGYGKNIQ----PIPPSPSSSSPTPPQTISITCIDATKFPAKHSPLECTHASILRELRKAMAGF 426
            L  LRV A     +    G I V+FAN+FLGGGVL +G+VQEE+  + CPE++  M     +   EA+ I+   +++K SGYG + Q     +  +P  SS    +  ++  IDA  F  K    E    +I REL KA  GF
Sbjct:  298 LSALRVHADAAGTIEEAHGLIQVDFANKFLGGGVLNYGSVQEEIRFMICPELMISMLFTEALRPNEALMIIGCEQYSKYSGYGHSFQWAGEYVDTTPWDSSGR--RRCAVLAIDAQPFSNKSQ--EYRKEAITRELDKAWVGF 436          
BLAST of mRNA_M-pyrifera_M_contig100002.9.1 vs. uniprot
Match: A0A3B6I0U8_WHEAT (Poly(ADP-ribose) glycohydrolase n=15 Tax=Triticeae TaxID=147389 RepID=A0A3B6I0U8_WHEAT)

HSP 1 Score: 74.3 bits (181), Expect = 1.120e-12
Identity = 54/150 (36.00%), Postives = 78/150 (52.00%), Query Frame = 1
Query:    1 STPLCPLRV-EAGTEWDMFGVEGAIGVNFANRFLGGGVLRFGAVQEEVLVLQCPEIVAVMTMMGKMTDAEAMQILNLRRFNKTSGYGKNIQ------PIPPSPSSSSPTPPQTISITCIDATKFPAKHSPLECTHASILRELRKAMAGFI 429
            S PLCP RV  +G   D    E A+ V+FAN++LGGG L  G VQEE+  +  PE++  M  M  M D EA++I+   RF++  GYG + +       + P  +       +   I  IDA   P K   L+   + +LRE+ KA  GF+
Sbjct:  236 SVPLCPFRVISSGLIEDE--EEEALEVDFANKYLGGGALSRGCVQEEIRFMINPELIVGMLFMASMEDNEAIEIVGAERFSQYMGYGSSFRFVGDYLDMKPLDAMGR----RKTRIVAIDALDCPTK---LQYETSGLLREVNKAFVGFL 376          
BLAST of mRNA_M-pyrifera_M_contig100002.9.1 vs. uniprot
Match: UPI001C9B14E8 (poly(ADP-ribose) glycohydrolase-like n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9B14E8)

HSP 1 Score: 74.3 bits (181), Expect = 1.210e-12
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   10 LCPLRVEAGTEWDMFGVEGAIGVNFANRFLGGGVLRFGAVQEEVLVLQCPEIVAVMTMMGKMTDAEAMQILNLRRFNKTSGYGKNIQ----PIPPSPSSSSPTPPQTISITCIDATKFPAKHSPLECTHASILRELRKAMAGFI 429
            L PL + +    +  G  G + ++FAN+++GGGVL FG VQEE+  + CPE++  M +  ++ D EA+ +  + R++K  GY  + +     I  +P  +S    +  SI  IDA  F  KH   + + ++I REL KA  GFI
Sbjct:  324 LLPLHITSKGTIETEGA-GLLQMDFANKYVGGGVLGFGCVQEEIRFVICPELMVTMLVTEELDDTEALIVSGIERYSKYKGYSNSFKWLGDYIDETPRDNSGR--RLTSIVAIDALYF--KHPQSQFSISNITRELNKAYVGFI 462          
BLAST of mRNA_M-pyrifera_M_contig100002.9.1 vs. uniprot
Match: UPI001F5FC7E5 (poly(ADP-ribose) glycohydrolase-like n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F5FC7E5)

HSP 1 Score: 74.3 bits (181), Expect = 1.210e-12
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 1
Query:   61 EGAIGVNFANRFLGGGVLRFGAVQEEVLVLQCPEIVAVMTMMGKMTDAEAMQILNLRRFNKTSGYGKNIQ----PIPPSPSSSSPTPPQTISITCIDATKFPAKHSPLECTHASILRELRKAMAGFI 429
             G + V+FAN+ LGGGVLR+G VQEE+  + CPE++        M   EA+ I+   RF+   GYG N +        +P  SS    +  SIT IDA  F  ++  ++ T ++I REL KA  GF 
Sbjct:  385 RGMLQVDFANKRLGGGVLRWGCVQEEIRFVICPELIVSRLFTESMEPLEAVHIIGCERFSNYKGYGDNFEWSGDHCDTTPRDSSGR--RLCSITAIDALAF--RNPNMQYTPSNITRELNKAYVGFF 507          
BLAST of mRNA_M-pyrifera_M_contig100002.9.1 vs. uniprot
Match: A0A6P5IBD4_BOMTE (Poly(ADP-ribose) glycohydrolase n=14 Tax=Bombus TaxID=28641 RepID=A0A6P5IBD4_BOMTE)

HSP 1 Score: 73.9 bits (180), Expect = 1.640e-12
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1
Query:   64 GAIGVNFANRFLGGGVLRFGAVQEEVLVLQCPEIVAVMTMMGKMTDAEAMQILNLRRFNKTSGYGKNIQ----PIPPSPSSSSPTPPQTISITCIDATKFPAKHSPLECTHASILRELRKAMAGFIQ 432
            G + V+FANR++GGGVL  G VQEE+  + CPE++  M +  ++ D EA+ +  + R++K  GY  + +     +  +P  SS    +  SI  IDA  F   HS  +    +I+REL KA  GF++
Sbjct:  342 GFLQVDFANRYVGGGVLGLGCVQEEIRFVICPELMVTMLITEELDDTEALIVSGIERYSKYKGYSNSFKWMGDYVDETPKDSSGR--RLTSIVAIDALYF--THSEAQFNINNIIRELNKAYVGFVR 464          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100002.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I1GKZ1_BRADI3.260e-1336.67Poly(ADP-ribose) glycohydrolase n=3 Tax=Brachypodi... [more]
A0A0D8XX85_DICVI3.330e-1336.36Poly(ADP-ribose) glycohydrolase n=1 Tax=Dictyocaul... [more]
A0A812WA90_SYMPI3.470e-1336.91Poly(ADP-ribose) glycohydrolase n=1 Tax=Symbiodini... [more]
A0A8B8HF59_9NEOP4.710e-1337.14Poly(ADP-ribose) glycohydrolase n=3 Tax=Vanessa Ta... [more]
UPI001E271F5D6.350e-1334.93poly(ADP-ribose) glycohydrolase n=1 Tax=Melitaea c... [more]
UPI001F135B956.410e-1337.06poly(ADP-ribose) glycohydrolase-like n=1 Tax=Vanes... [more]
A0A3B6I0U8_WHEAT1.120e-1236.00Poly(ADP-ribose) glycohydrolase n=15 Tax=Triticeae... [more]
UPI001C9B14E81.210e-1234.72poly(ADP-ribose) glycohydrolase-like n=1 Tax=Colle... [more]
UPI001F5FC7E51.210e-1238.58poly(ADP-ribose) glycohydrolase-like n=2 Tax=Schis... [more]
A0A6P5IBD4_BOMTE1.640e-1236.22Poly(ADP-ribose) glycohydrolase n=14 Tax=Bombus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100002contigM-pyrifera_M_contig100002:3..449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.5
Seed ortholog evalue7.4e-13
Seed eggNOG ortholog15368.BRADI1G01980.1
KEGG koko:K07759
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004553,GO:0004649,GO:0006282,GO:0006950,GO:0006952,GO:0006970,GO:0006974,GO:0006979,GO:0008150,GO:0009414,GO:0009415,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009987,GO:0010035,GO:0010118,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0031323,GO:0033554,GO:0042221,GO:0043207,GO:0048583,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051052,GO:0051171,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:0090332,GO:0098542,GO:1901700,GO:2001020
EggNOG free text desc.Poly (ADP-ribose) glycohydrolase (PARG)
EggNOG OGs37Q5Y@33090,3GAAQ@35493,3I9JI@38820,3KX5U@4447,KOG2064@1,KOG2064@2759
EC3.2.1.143
COG Functional cat.T
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.5801952-CDS-M-pyrifera_M_contig100002:2..4491622815494.5801952-CDS-M-pyrifera_M_contig100002:2..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100002 3..449 +
1692277437.2139313-CDS-M-pyrifera_M_contig100002:2..4491692277437.2139313-CDS-M-pyrifera_M_contig100002:2..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100002 3..449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100002.9.1prot_M-pyrifera_M_contig100002.9.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100002 3..449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100002.9.1

>prot_M-pyrifera_M_contig100002.9.1 ID=prot_M-pyrifera_M_contig100002.9.1|Name=mRNA_M-pyrifera_M_contig100002.9.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
STPLCPLRVEAGTEWDMFGVEGAIGVNFANRFLGGGVLRFGAVQEEVLVL
QCPEIVAVMTMMGKMTDAEAMQILNLRRFNKTSGYGKNIQPIPPSPSSSS
PTPPQTISITCIDATKFPAKHSPLECTHASILRELRKAMAGFIQRGEEE
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mRNA from alignment at M-pyrifera_M_contig100002:3..449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100002.9.1 ID=mRNA_M-pyrifera_M_contig100002.9.1|Name=mRNA_M-pyrifera_M_contig100002.9.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig100002:3..449+ (Macrocystis pyrifera P11B4 male)
TCCACACCGCTCTGCCCTCTTCGAGTGGAAGCTGGGACGGAGTGGGATAT GTTTGGGGTGGAAGGTGCGATTGGAGTAAATTTCGCCAATCGGTTTTTGG GAGGAGGGGTGTTGCGGTTTGGAGCTGTGCAGGAGGAAGTGTTGGTGTTG CAATGCCCAGAGATAGTAGCGGTGATGACGATGATGGGCAAGATGACAGA CGCTGAGGCGATGCAAATCCTCAACCTCAGGCGATTCAACAAAACTTCTG GATACGGGAAAAACATCCAACCCATCCCTCCCTCTCCCTCTTCCTCTTCC CCAACACCCCCACAAACCATCTCCATCACTTGCATCGATGCCACGAAATT CCCAGCCAAACACTCGCCCCTGGAATGCACGCACGCCTCCATCCTCAGGG AGCTCCGGAAAGCAATGGCAGGGTTCATCCAAAGAGGAGAAGAAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100002:3..449+

>mRNA_M-pyrifera_M_contig100002.9.1 ID=mRNA_M-pyrifera_M_contig100002.9.1|Name=mRNA_M-pyrifera_M_contig100002.9.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig100002:3..449+ (Macrocystis pyrifera P11B4 male)
TCCACACCGCTCTGCCCTCTTCGAGTGGAAGCTGGGACGGAGTGGGATAT
GTTTGGGGTGGAAGGTGCGATTGGAGTAAATTTCGCCAATCGGTTTTTGG
GAGGAGGGGTGTTGCGGTTTGGAGCTGTGCAGGAGGAAGTGTTGGTGTTG
CAATGCCCAGAGATAGTAGCGGTGATGACGATGATGGGCAAGATGACAGA
CGCTGAGGCGATGCAAATCCTCAACCTCAGGCGATTCAACAAAACTTCTG
GATACGGGAAAAACATCCAACCCATCCCTCCCTCTCCCTCTTCCTCTTCC
CCAACACCCCCACAAACCATCTCCATCACTTGCATCGATGCCACGAAATT
CCCAGCCAAACACTCGCCCCTGGAATGCACGCACGCCTCCATCCTCAGGG
AGCTCCGGAAAGCAATGGCAGGGTTCATCCAAAGAGGAGAAGAAGAATCC
ACACCGCTCTGCCCTCTTCGAGTGGAAGCTGGGACGGAGTGGGATATGTT
TGGGGTGGAAGGTGCGATTGGAGTAAATTTCGCCAATCGGTTTTTGGGAG
GAGGGGTGTTGCGGTTTGGAGCTGTGCAGGAGGAAGTGTTGGTGTTGCAA
TGCCCAGAGATAGTAGCGGTGATGACGATGATGGGCAAGATGACAGACGC
TGAGGCGATGCAAATCCTCAACCTCAGGCGATTCAACAAAACTTCTGGAT
ACGGGAAAAACATCCAACCCATCCCTCCCTCTCCCTCTTCCTCTTCCCCA
ACACCCCCACAAACCATCTCCATCACTTGCATCGATGCCACGAAATTCCC
AGCCAAACACTCGCCCCTGGAATGCACGCACGCCTCCATCCTCAGGGAGC
TCCGGAAAGCAATGGCAGGGTTCATCCAAAGAGGAGAAGAAGAA
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