mRNA_M-pyrifera_M_contig104081.874.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104081.874.1
Unique NamemRNA_M-pyrifera_M_contig104081.874.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104081.874.1 vs. uniprot
Match: D8LLK1_ECTSI (Deubiquitinating enzyme A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK1_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.590e-14
Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:    1 VEEVEPDGNCLFRSVAVHVYGTEDAHMRVRLDTCKHIRMHRDHFAAFVG-DVESYTSFMEKDRVWGGNVEICALQEMFDR 237
            V +VEPDGNCLFRSV+  +YG  D H  VR    +H+  HR  F  FV  D   Y   + +  VWG ++EI AL+EMFDR
Sbjct:  516 VVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDR 595
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BLAST of mRNA_M-pyrifera_M_contig104081.874.1 vs. uniprot
Match: A0A6H5K5G6_9PHAE (Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.730e-14
Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:    1 VEEVEPDGNCLFRSVAVHVYGTEDAHMRVRLDTCKHIRMHRDHFAAFVG-DVESYTSFMEKDRVWGGNVEICALQEMFDR 237
            V +VEPDGNCLFRSV+  +YG  D H  VR    +H+  HR  F  FV  D   Y   + +  VWG ++EI AL+EMFDR
Sbjct: 1018 VVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDR 1097
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BLAST of mRNA_M-pyrifera_M_contig104081.874.1 vs. uniprot
Match: A0A836CLU3_9STRA (OTU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.830e-13
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   10 VEPDGNCLFRSVAVHVYGTEDAHMRVRLDTCKHIRMHRDHFAAFV-GDVESYTSFMEKDRVWGGNVEICALQEMFDR 237
            +EPDGNCL+R+V+  +YG  D H+ VR     H+  HR  F  FV GD  +Y     +  VWG ++EI AL+E+FDR
Sbjct:    1 MEPDGNCLYRAVSDQIYGNCDNHLYVRKACVDHMSAHRTRFGTFVAGDFAAYLRRARQPGVWGDDLEIRALEEVFDR 77
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BLAST of mRNA_M-pyrifera_M_contig104081.874.1 vs. uniprot
Match: A0A0V0QHA7_PSEPJ (Deubiquitinating enzyme A n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QHA7_PSEPJ)

HSP 1 Score: 69.3 bits (168), Expect = 6.000e-12
Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    1 VEEVEPDGNCLFRSVAVHVYGTEDAHMRVRLDTCKHIRMHRDHFAAF----VGDVESYTSFMEKDRVWGGNVEICALQEMFDR 237
            + EVE DGNCLFR+++  +YGTE  H  +R     +I +++++F  F    V + E Y  +   D+VWG N+EI AL+E+++R
Sbjct:  181 IYEVEGDGNCLFRAISHQIYGTEKYHQEIRNICLDYIMINKNYFKDFIIGGVRNFEDYIQWKRSDKVWGDNLEIQALREIYER 263
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BLAST of mRNA_M-pyrifera_M_contig104081.874.1 vs. uniprot
Match: A0A2G2ZDC6_CAPAN (Uncharacterized protein n=2 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2ZDC6_CAPAN)

HSP 1 Score: 68.9 bits (167), Expect = 8.150e-12
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    1 VEEVEPDGNCLFRSVAVHVYGTEDAHMRVRLDTCKHIRMHRDHFAAFVGD-VESYTSFMEKDRVWGGNVEICALQEMFDR 237
            V+++  DGNCLFR+VA  VYG  +A+  VR  +  ++   RDHF+ F+ +  +SY     +D+V+G NVEI AL EM++R
Sbjct:  248 VKKMREDGNCLFRAVADQVYGDSEAYDLVRQMSIDYMERERDHFSQFITEGFKSYCKRKRRDKVYGNNVEIQALSEMYNR 327
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BLAST of mRNA_M-pyrifera_M_contig104081.874.1 vs. uniprot
Match: A0A2G2VAV5_CAPBA (OTU domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VAV5_CAPBA)

HSP 1 Score: 68.9 bits (167), Expect = 8.300e-12
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    1 VEEVEPDGNCLFRSVAVHVYGTEDAHMRVRLDTCKHIRMHRDHFAAFVGD-VESYTSFMEKDRVWGGNVEICALQEMFDR 237
            V+++  DGNCLFR+VA  VYG  +A+  VR  +  ++   RDHF+ F+ +  +SY     +D+V+G NVEI AL EM++R
Sbjct:  248 VKKMREDGNCLFRAVADQVYGDSEAYDLVRQMSIDYMERERDHFSQFITEGFKSYCKRKRRDKVYGNNVEIQALSEMYNR 327
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BLAST of mRNA_M-pyrifera_M_contig104081.874.1 vs. uniprot
Match: A0A2G3CBD5_CAPCH (OTU domain-containing protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3CBD5_CAPCH)

HSP 1 Score: 68.9 bits (167), Expect = 8.340e-12
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    1 VEEVEPDGNCLFRSVAVHVYGTEDAHMRVRLDTCKHIRMHRDHFAAFVGD-VESYTSFMEKDRVWGGNVEICALQEMFDR 237
            V+++  DGNCLFR+VA  VYG  +A+  VR  +  ++   RDHF+ F+ +  +SY     +D+V+G NVEI AL EM++R
Sbjct:  248 VKKMREDGNCLFRAVADQVYGDSEAYDLVRQMSIDYMERERDHFSQFITEGFKSYCKRKRRDKVYGNNVEIQALSEMYNR 327
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BLAST of mRNA_M-pyrifera_M_contig104081.874.1 vs. uniprot
Match: M1A5D8_SOLTU (OJ000126_13.12 protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1A5D8_SOLTU)

HSP 1 Score: 67.8 bits (164), Expect = 1.960e-11
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    1 VEEVEPDGNCLFRSVAVHVYGTEDAHMRVRLDTCKHIRMHRDHFAAFVGDVESYTSFMEK---DRVWGGNVEICALQEMFDR 237
            V+++  DGNCLFR+VA  VYG  +A+  VR     ++   RDHF+ F+   E +TS+ ++   D+V+G NVEI AL EM++R
Sbjct:  247 VKKMREDGNCLFRAVADQVYGDSEAYDLVRQMCIDYMERERDHFSQFI--TEGFTSYCKRKRRDKVYGNNVEIQALSEMYNR 326
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BLAST of mRNA_M-pyrifera_M_contig104081.874.1 vs. uniprot
Match: M1A5D9_SOLTU (OJ000126_13.12 protein n=7 Tax=Solanum TaxID=4107 RepID=M1A5D9_SOLTU)

HSP 1 Score: 67.8 bits (164), Expect = 2.080e-11
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    1 VEEVEPDGNCLFRSVAVHVYGTEDAHMRVRLDTCKHIRMHRDHFAAFVGDVESYTSFMEK---DRVWGGNVEICALQEMFDR 237
            V+++  DGNCLFR+VA  VYG  +A+  VR     ++   RDHF+ F+   E +TS+ ++   D+V+G NVEI AL EM++R
Sbjct:  247 VKKMREDGNCLFRAVADQVYGDSEAYDLVRQMCIDYMERERDHFSQFI--TEGFTSYCKRKRRDKVYGNNVEIQALSEMYNR 326
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BLAST of mRNA_M-pyrifera_M_contig104081.874.1 vs. uniprot
Match: F4PVP0_CAVFA (Deubiquitinating enzyme A n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PVP0_CAVFA)

HSP 1 Score: 67.4 bits (163), Expect = 2.800e-11
Identity = 31/80 (38.75%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 VEEVEPDGNCLFRSVAVHVYGTEDAHMRVRLDTCKHIRMHRDHFAAFVG-DVESYTSFMEKDRVWGGNVEICALQEMFDR 237
            ++ ++ DGNCLFRS+A  +YG ++ H +VR    +++   RDH++ F+  D + Y      D+V+G NVE+ AL E+F+R
Sbjct:  264 LKRMKEDGNCLFRSIADQIYGDQEMHGQVREKCMEYMMAERDHYSQFITEDFDEYIKRKRNDKVYGNNVEMQALSEIFNR 343
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104081.874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK1_ECTSI5.590e-1448.75Deubiquitinating enzyme A n=1 Tax=Ectocarpus silic... [more]
A0A6H5K5G6_9PHAE5.730e-1448.75Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. C... [more]
A0A836CLU3_9STRA4.830e-1345.45OTU domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A0V0QHA7_PSEPJ6.000e-1239.76Deubiquitinating enzyme A n=1 Tax=Pseudocohnilembu... [more]
A0A2G2ZDC6_CAPAN8.150e-1243.75Uncharacterized protein n=2 Tax=Capsicum annuum Ta... [more]
A0A2G2VAV5_CAPBA8.300e-1243.75OTU domain-containing protein n=1 Tax=Capsicum bac... [more]
A0A2G3CBD5_CAPCH8.340e-1243.75OTU domain-containing protein n=1 Tax=Capsicum chi... [more]
M1A5D8_SOLTU1.960e-1143.90OJ000126_13.12 protein n=1 Tax=Solanum tuberosum T... [more]
M1A5D9_SOLTU2.080e-1143.90OJ000126_13.12 protein n=7 Tax=Solanum TaxID=4107 ... [more]
F4PVP0_CAVFA2.800e-1138.75Deubiquitinating enzyme A n=1 Tax=Cavenderia fasci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104081contigM-pyrifera_M_contig104081:363..605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue7.6e-12
Seed eggNOG ortholog2880.D8LLK1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsKOG2605@1,KOG2605@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.2788978-CDS-M-pyrifera_M_contig104081:362..6051622815547.2788978-CDS-M-pyrifera_M_contig104081:362..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104081 363..605 +
1692277458.2874086-CDS-M-pyrifera_M_contig104081:362..6051692277458.2874086-CDS-M-pyrifera_M_contig104081:362..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104081 363..605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104081.874.1prot_M-pyrifera_M_contig104081.874.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104081 363..605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104081.874.1

>prot_M-pyrifera_M_contig104081.874.1 ID=prot_M-pyrifera_M_contig104081.874.1|Name=mRNA_M-pyrifera_M_contig104081.874.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
VEEVEPDGNCLFRSVAVHVYGTEDAHMRVRLDTCKHIRMHRDHFAAFVGD
VESYTSFMEKDRVWGGNVEICALQEMFDRWV
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mRNA from alignment at M-pyrifera_M_contig104081:363..605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104081.874.1 ID=mRNA_M-pyrifera_M_contig104081.874.1|Name=mRNA_M-pyrifera_M_contig104081.874.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig104081:363..605+ (Macrocystis pyrifera P11B4 male)
GTGGAAGAGGTAGAGCCAGACGGCAACTGCCTGTTTCGATCTGTGGCTGT
GCACGTGTACGGAACCGAGGATGCACACATGCGGGTGCGGTTGGACACAT
GCAAGCACATTCGTATGCACCGGGACCACTTTGCTGCGTTCGTAGGAGAC
GTTGAGTCGTACACATCGTTTATGGAGAAGGACAGGGTGTGGGGAGGCAA
CGTGGAGATTTGTGCTCTCCAGGAGATGTTTGATCGGTGGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104081:363..605+

>mRNA_M-pyrifera_M_contig104081.874.1 ID=mRNA_M-pyrifera_M_contig104081.874.1|Name=mRNA_M-pyrifera_M_contig104081.874.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig104081:363..605+ (Macrocystis pyrifera P11B4 male)
GTGGAAGAGGTAGAGCCAGACGGCAACTGCCTGTTTCGATCTGTGGCTGT
GCACGTGTACGGAACCGAGGATGCACACATGCGGGTGCGGTTGGACACAT
GCAAGCACATTCGTATGCACCGGGACCACTTTGCTGCGTTCGTAGGAGAC
GTTGAGTCGTACACATCGTTTATGGAGAAGGACAGGGTGTGGGGAGGCAA
CGTGGAGATTTGTGCTCTCCAGGAGATGTTTGATCGGTGGGTGGTGGAAG
AGGTAGAGCCAGACGGCAACTGCCTGTTTCGATCTGTGGCTGTGCACGTG
TACGGAACCGAGGATGCACACATGCGGGTGCGGTTGGACACATGCAAGCA
CATTCGTATGCACCGGGACCACTTTGCTGCGTTCGTAGGAGACGTTGAGT
CGTACACATCGTTTATGGAGAAGGACAGGGTGTGGGGAGGCAACGTGGAG
ATTTGTGCTCTCCAGGAGATGTTTGATCGGTGGGTG
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