mRNA_M-pyrifera_M_contig104072.870.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104072.870.1
Unique NamemRNA_M-pyrifera_M_contig104072.870.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104072.870.1 vs. uniprot
Match: A0A103Y4T5_CYNCS (Bromodomain-containing protein n=4 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103Y4T5_CYNCS)

HSP 1 Score: 105 bits (262), Expect = 3.960e-24
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:   16 ERMKKHPAAAIFRAPVDVVALKISDYYDVVKTPMDLGTVSEKLGSGRYGLVGDVVADVRLVWSNAMLYNPPSNYVHTIAKKLSDYFE 276
            +++  H    +F  PVDVVALKI DY++V+K PMDLGT+ EKLGSG+Y    + +ADVRL +SNAM YNPP N+VH +A  LS +FE
Sbjct:  179 KKLMSHQHGWVFNKPVDVVALKIPDYFNVIKNPMDLGTIKEKLGSGKYSSPLEFLADVRLTFSNAMTYNPPGNHVHLMADVLSKFFE 265
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BLAST of mRNA_M-pyrifera_M_contig104072.870.1 vs. uniprot
Match: A0A0D2VHN5_GOSRA (Bromo domain-containing protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2VHN5_GOSRA)

HSP 1 Score: 103 bits (256), Expect = 3.990e-24
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:   22 MKKHPAAAIFRAPVDVVALKISDYYDVVKTPMDLGTVSEKLGSGRYGLVGDVVADVRLVWSNAMLYNPPSNYVHTIAKKLSDYFERQLSSALPKF 306
            + KHPA  +F  PVD +ALKI DY+ ++K PMDLGT+  KL    Y  + + VAD+RL +SNAMLYNPPSN VH +A++++++FE +  S   K+
Sbjct:   93 LMKHPAGWVFNQPVDPIALKIPDYFSIIKNPMDLGTIKSKLVKNAYLGIEEFVADIRLTFSNAMLYNPPSNNVHKMAQEMNEFFESRWKSLEEKW 187
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BLAST of mRNA_M-pyrifera_M_contig104072.870.1 vs. uniprot
Match: A0A0D2ULR0_GOSRA (Bromo domain-containing protein n=3 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2ULR0_GOSRA)

HSP 1 Score: 103 bits (256), Expect = 1.450e-23
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:   22 MKKHPAAAIFRAPVDVVALKISDYYDVVKTPMDLGTVSEKLGSGRYGLVGDVVADVRLVWSNAMLYNPPSNYVHTIAKKLSDYFERQLSSALPKF 306
            + KHPA  +F  PVD +ALKI DY+ ++K PMDLGT+  KL    Y  + + VAD+RL +SNAMLYNPPSN VH +A++++++FE +  S   K+
Sbjct:   93 LMKHPAGWVFNQPVDPIALKIPDYFSIIKNPMDLGTIKSKLVKNAYLGIEEFVADIRLTFSNAMLYNPPSNNVHKMAQEMNEFFESRWKSLEEKW 187
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BLAST of mRNA_M-pyrifera_M_contig104072.870.1 vs. uniprot
Match: A0A2C9UFA8_MANES (Bromo domain-containing protein n=3 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9UFA8_MANES)

HSP 1 Score: 103 bits (257), Expect = 1.540e-23
Identity = 48/103 (46.60%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:   28 KHPAAAIFRAPVDVVALKISDYYDVVKTPMDLGTVSEKLGSGRYGLVGDVVADVRLVWSNAMLYNPPSNYVHTIAKKLSDYFERQLSSALPKFVSQLAEDAED 336
            KHP    FR PVD VAL I DY+ ++  PMDLGT+  KL   +Y    + VADVRL++SNAMLYNPP+NYVH +A+ ++ +FE +  S   K+  +L++  ++
Sbjct:   86 KHPCGWAFREPVDPVALNIPDYFSIISNPMDLGTIKSKLEKNQYSGAEEFVADVRLIFSNAMLYNPPTNYVHQMAESMNKFFESRWKSLEAKWNRELSKSGDE 188
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BLAST of mRNA_M-pyrifera_M_contig104072.870.1 vs. uniprot
Match: A0A0D2TKS3_GOSRA (Bromo domain-containing protein n=2 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2TKS3_GOSRA)

HSP 1 Score: 102 bits (254), Expect = 2.220e-23
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    7 AVVERMKKHPAAAIFRAPVDVVALKISDYYDVVKTPMDLGTVSEKLGSGRYGLVGDVVADVRLVWSNAMLYNPPSNYVHTIAKKLSDYFERQLSS 291
            A+++ + KHPA  +F  PVD  AL+I DY+ ++K PMDLGT+  KLG   Y    + VAD+RL +SNAMLYNPPSN VH +A+++ ++FE +  S
Sbjct:   84 ALLKALMKHPAGWVFNQPVDPKALQIPDYFSIIKNPMDLGTIKSKLGKNIYLGTDEFVADIRLTFSNAMLYNPPSNNVHKMAEEMKEFFEARWKS 178
[Close]
BLAST of mRNA_M-pyrifera_M_contig104072.870.1 vs. uniprot
Match: A0A0D2UNE3_GOSRA (Bromo domain-containing protein n=66 Tax=Gossypium TaxID=3633 RepID=A0A0D2UNE3_GOSRA)

HSP 1 Score: 103 bits (256), Expect = 2.330e-23
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:   22 MKKHPAAAIFRAPVDVVALKISDYYDVVKTPMDLGTVSEKLGSGRYGLVGDVVADVRLVWSNAMLYNPPSNYVHTIAKKLSDYFERQLSSALPKF 306
            + KHPA  +F  PVD +ALKI DY+ ++K PMDLGT+  KL    Y  + + VAD+RL +SNAMLYNPPSN VH +A++++++FE +  S   K+
Sbjct:   93 LMKHPAGWVFNQPVDPIALKIPDYFSIIKNPMDLGTIKSKLVKNAYLGIEEFVADIRLTFSNAMLYNPPSNNVHKMAQEMNEFFESRWKSLEEKW 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig104072.870.1 vs. uniprot
Match: A0A6P5WHS8_DURZI (transcription factor GTE12-like isoform X1 n=2 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5WHS8_DURZI)

HSP 1 Score: 102 bits (255), Expect = 3.230e-23
Identity = 47/100 (47.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    7 AVVERMKKHPAAAIFRAPVDVVALKISDYYDVVKTPMDLGTVSEKLGSGRYGLVGDVVADVRLVWSNAMLYNPPSNYVHTIAKKLSDYFERQLSSALPKF 306
            A+++ + KHPA  +F  PVD  ALKI DY+ ++K PMDLGT+  KL    Y  + + VAD++L +SNAMLYNPPSN VH +A++++++FE +  S   K+
Sbjct:  100 ALLKALMKHPAGWVFNQPVDPKALKIPDYFSIIKNPMDLGTIKSKLAKNTYLGIEEFVADIKLTFSNAMLYNPPSNNVHKMAEEMNEFFEARWKSLEEKW 199
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BLAST of mRNA_M-pyrifera_M_contig104072.870.1 vs. uniprot
Match: UPI001CB98039 (transcription factor GTE9-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB98039)

HSP 1 Score: 102 bits (255), Expect = 3.500e-23
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:   16 ERMKKHPAAAIFRAPVDVVALKISDYYDVVKTPMDLGTVSEKLGSGRYGLVGDVVADVRLVWSNAMLYNPPSNYVHTIAKKLSDYFE 276
            +++  HP   +F  PVDVV LKI DY+DV+K PMD GT+ EKL SG+Y    + +ADVRL +SNAM YNPP N VH +A  LS +FE
Sbjct:  180 KKLMTHPHGWVFNNPVDVVTLKIPDYFDVIKNPMDFGTIKEKLSSGKYSSPLEFLADVRLTFSNAMTYNPPGNDVHVMADVLSKFFE 266
[Close]
BLAST of mRNA_M-pyrifera_M_contig104072.870.1 vs. uniprot
Match: A0A0D2UMW8_GOSRA (Bromo domain-containing protein n=25 Tax=Gossypium TaxID=3633 RepID=A0A0D2UMW8_GOSRA)

HSP 1 Score: 102 bits (254), Expect = 3.540e-23
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    7 AVVERMKKHPAAAIFRAPVDVVALKISDYYDVVKTPMDLGTVSEKLGSGRYGLVGDVVADVRLVWSNAMLYNPPSNYVHTIAKKLSDYFERQLSS 291
            A+++ + KHPA  +F  PVD  AL+I DY+ ++K PMDLGT+  KLG   Y    + VAD+RL +SNAMLYNPPSN VH +A+++ ++FE +  S
Sbjct:   84 ALLKALMKHPAGWVFNQPVDPKALQIPDYFSIIKNPMDLGTIKSKLGKNIYLGTDEFVADIRLTFSNAMLYNPPSNNVHKMAEEMKEFFEARWKS 178
[Close]
BLAST of mRNA_M-pyrifera_M_contig104072.870.1 vs. uniprot
Match: A0A6A3A654_HIBSY (Bidirectional sugar transporter SWEET2a-like isoform X1 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A654_HIBSY)

HSP 1 Score: 102 bits (254), Expect = 4.320e-23
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    7 AVVERMKKHPAAAIFRAPVDVVALKISDYYDVVKTPMDLGTVSEKLGSGRYGLVGDVVADVRLVWSNAMLYNPPSNYVHTIAKKLSDYFERQLSS 291
            A+++ + KHPAA +F  PVD  AL I DY+ ++KTPMDLGT+  KL    Y    D VAD+RL ++NAMLYNPPSN VH +A+++ D FE +  S
Sbjct:   93 ALLKALLKHPAAWVFNQPVDPKALGIPDYFSIIKTPMDLGTIKSKLAKNIYIGTDDFVADIRLTFANAMLYNPPSNNVHKMAEEMKDIFEARWKS 187
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104072.870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A103Y4T5_CYNCS3.960e-2456.32Bromodomain-containing protein n=4 Tax=Cynara card... [more]
A0A0D2VHN5_GOSRA3.990e-2449.47Bromo domain-containing protein n=1 Tax=Gossypium ... [more]
A0A0D2ULR0_GOSRA1.450e-2349.47Bromo domain-containing protein n=3 Tax=Gossypium ... [more]
A0A2C9UFA8_MANES1.540e-2346.60Bromo domain-containing protein n=3 Tax=Manihot es... [more]
A0A0D2TKS3_GOSRA2.220e-2349.47Bromo domain-containing protein n=2 Tax=Gossypium ... [more]
A0A0D2UNE3_GOSRA2.330e-2349.47Bromo domain-containing protein n=66 Tax=Gossypium... [more]
A0A6P5WHS8_DURZI3.230e-2347.00transcription factor GTE12-like isoform X1 n=2 Tax... [more]
UPI001CB980393.500e-2355.17transcription factor GTE9-like n=1 Tax=Erigeron ca... [more]
A0A0D2UMW8_GOSRA3.540e-2349.47Bromo domain-containing protein n=25 Tax=Gossypium... [more]
A0A6A3A654_HIBSY4.320e-2351.58Bidirectional sugar transporter SWEET2a-like isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104072contigM-pyrifera_M_contig104072:212..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score105.1
Seed ortholog evalue2e-20
Seed eggNOG ortholog3983.cassava4.1_024445m
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transcription factor
EggNOG OGs37JNZ@33090,3G752@35493,4JHVS@91835,COG5076@1,KOG1474@2759
COG Functional cat.K
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.1045418-UTR-M-pyrifera_M_contig104072:211..2321622815547.1045418-UTR-M-pyrifera_M_contig104072:211..232Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104072 212..232 +
1692277458.2320929-UTR-M-pyrifera_M_contig104072:211..2321692277458.2320929-UTR-M-pyrifera_M_contig104072:211..232Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104072 212..232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.1187673-CDS-M-pyrifera_M_contig104072:232..5471622815547.1187673-CDS-M-pyrifera_M_contig104072:232..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104072 233..547 +
1692277458.2426734-CDS-M-pyrifera_M_contig104072:232..5471692277458.2426734-CDS-M-pyrifera_M_contig104072:232..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104072 233..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104072.870.1prot_M-pyrifera_M_contig104072.870.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104072 233..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104072.870.1

>prot_M-pyrifera_M_contig104072.870.1 ID=prot_M-pyrifera_M_contig104072.870.1|Name=mRNA_M-pyrifera_M_contig104072.870.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MKKHPAAAIFRAPVDVVALKISDYYDVVKTPMDLGTVSEKLGSGRYGLVG
DVVADVRLVWSNAMLYNPPSNYVHTIAKKLSDYFERQLSSALPKFVSQLA
EDAED
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mRNA from alignment at M-pyrifera_M_contig104072:212..547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104072.870.1 ID=mRNA_M-pyrifera_M_contig104072.870.1|Name=mRNA_M-pyrifera_M_contig104072.870.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig104072:212..547+ (Macrocystis pyrifera P11B4 male)
CTGCTGGCGGTAGTGGAGCGCATGAAGAAGCACCCGGCAGCCGCCATCTT
CCGTGCTCCTGTGGACGTGGTTGCGCTCAAAATCAGCGATTACTACGATG
TGGTGAAGACGCCGATGGATCTGGGCACGGTGAGCGAGAAGCTGGGCAGC
GGGCGGTACGGGCTGGTAGGAGACGTGGTGGCAGATGTTCGGCTGGTGTG
GTCCAATGCGATGCTGTACAACCCGCCTTCCAACTATGTGCACACCATCG
CGAAGAAGCTGAGCGATTACTTTGAGCGTCAGCTGTCTTCTGCGCTGCCC
AAGTTCGTGAGCCAGCTGGCAGAGGACGCGGAGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104072:212..547+

>mRNA_M-pyrifera_M_contig104072.870.1 ID=mRNA_M-pyrifera_M_contig104072.870.1|Name=mRNA_M-pyrifera_M_contig104072.870.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig104072:212..547+ (Macrocystis pyrifera P11B4 male)
ATGAAGAAGCACCCGGCAGCCGCCATCTTCCGTGCTCCTGTGGACGTGGT
TGCGCTCAAAATCAGCGATTACTACGATGTGGTGAAGACGCCGATGGATC
TGGGCACGGTGAGCGAGAAGCTGGGCAGCGGGCGGTACGGGCTGGTAGGA
GACGTGGTGGCAGATGTTCGGCTGGTGTGGTCCAATGCGATGCTGTACAA
CCCGCCTTCCAACTATGTGCACACCATCGCGAAGAAGCTGAGCGATTACT
TTGAGCGTCAGCTGTCTTCTGCGCTGCCCAAGTTCGTGAGCCAGCTGGCA
GAGGACGCGGAGGACATGAAGAAGCACCCGGCAGCCGCCATCTTCCGTGC
TCCTGTGGACGTGGTTGCGCTCAAAATCAGCGATTACTACGATGTGGTGA
AGACGCCGATGGATCTGGGCACGGTGAGCGAGAAGCTGGGCAGCGGGCGG
TACGGGCTGGTAGGAGACGTGGTGGCAGATGTTCGGCTGGTGTGGTCCAA
TGCGATGCTGTACAACCCGCCTTCCAACTATGTGCACACCATCGCGAAGA
AGCTGAGCGATTACTTTGAGCGTCAGCTGTCTTCTGCGCTGCCCAAGTTC
GTGAGCCAGCTGGCAGAGGACGCGGAGGAC
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