mRNA_M-pyrifera_M_contig104052.866.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104052.866.1
Unique NamemRNA_M-pyrifera_M_contig104052.866.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig104052.866.1 vs. uniprot
Match: A0A7V9GGK7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9GGK7_9ACTN)

HSP 1 Score: 100 bits (248), Expect = 2.870e-22
Identity = 65/159 (40.88%), Postives = 79/159 (49.69%), Query Frame = 1 
Query:    1 AGPWSSGTSHLLPAAYSTR--RVSLATALVEEFAELLRTPIDREAQEFWTSRYVHERRPANQPGV----DLDRVYCCGEFPTDGHWTTTSPHLAIHESLATAWELDVGGVTDVLRRRQSIPLGARVYEIHEPEDWAGLVERYPVLPAPPHWGCELPGPN 459
            AGPW       L  AY+    R  +A ALVE + + L   ID  AQ++W     H   P+         D D VY  GEF   G WT T P   +H  L  AWE+D G V+   R    +   ARV+EIH+P DWA LVE Y  +   PH G ELPGPN
Sbjct:   75 AGPWMPDAPMNLARAYAHAGARRPIARALVERYGDELDRDIDVGAQQWW-----HATEPSASAVAPRFTDFDDVYGNGEFTFAGLWTVTDPPAEVHVDLVDAWEMDRGPVS---RWHLPVSATARVWEIHDPTDWARLVETYSRVADRPHGGWELPGPN 225
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104052.866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7V9GGK7_9ACTN2.870e-2240.88Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104052contigM-pyrifera_M_contig104052:59..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.9471626-CDS-M-pyrifera_M_contig104052:58..5171622815546.9471626-CDS-M-pyrifera_M_contig104052:58..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104052 59..517 -
1692277458.1896517-CDS-M-pyrifera_M_contig104052:58..5171692277458.1896517-CDS-M-pyrifera_M_contig104052:58..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104052 59..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104052.866.1prot_M-pyrifera_M_contig104052.866.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104052 59..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104052.866.1

>prot_M-pyrifera_M_contig104052.866.1 ID=prot_M-pyrifera_M_contig104052.866.1|Name=mRNA_M-pyrifera_M_contig104052.866.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
AGPWSSGTSHLLPAAYSTRRVSLATALVEEFAELLRTPIDREAQEFWTSR
YVHERRPANQPGVDLDRVYCCGEFPTDGHWTTTSPHLAIHESLATAWELD
VGGVTDVLRRRQSIPLGARVYEIHEPEDWAGLVERYPVLPAPPHWGCELP
GPN
back to top

mRNA from alignment at M-pyrifera_M_contig104052:59..517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104052.866.1 ID=mRNA_M-pyrifera_M_contig104052.866.1|Name=mRNA_M-pyrifera_M_contig104052.866.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig104052:59..517- (Macrocystis pyrifera P11B4 male)
GCCGGTCCCTGGAGTTCGGGAACCTCACACCTGCTGCCGGCGGCGTACTC
GACTCGACGGGTCTCGTTGGCGACAGCCCTGGTCGAAGAATTCGCCGAAC
TGCTGCGGACGCCGATCGACCGCGAGGCCCAGGAGTTCTGGACGAGCAGG
TATGTGCACGAGCGCCGGCCGGCCAACCAGCCCGGTGTCGATCTCGACCG
CGTCTACTGCTGCGGTGAGTTTCCGACCGACGGCCACTGGACCACGACCT
CACCCCATCTAGCAATACACGAGTCACTTGCCACCGCCTGGGAACTCGAC
GTCGGTGGCGTGACCGACGTCTTGCGGAGGCGCCAGTCGATCCCGCTCGG
CGCTCGGGTGTACGAGATCCACGAACCGGAAGACTGGGCCGGCTTGGTCG
AGCGGTATCCGGTGCTCCCGGCCCCTCCACACTGGGGTTGCGAACTGCCG
GGGCCGAAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104052:59..517-

>mRNA_M-pyrifera_M_contig104052.866.1 ID=mRNA_M-pyrifera_M_contig104052.866.1|Name=mRNA_M-pyrifera_M_contig104052.866.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig104052:59..517- (Macrocystis pyrifera P11B4 male)
GCCGGTCCCTGGAGTTCGGGAACCTCACACCTGCTGCCGGCGGCGTACTC
GACTCGACGGGTCTCGTTGGCGACAGCCCTGGTCGAAGAATTCGCCGAAC
TGCTGCGGACGCCGATCGACCGCGAGGCCCAGGAGTTCTGGACGAGCAGG
TATGTGCACGAGCGCCGGCCGGCCAACCAGCCCGGTGTCGATCTCGACCG
CGTCTACTGCTGCGGTGAGTTTCCGACCGACGGCCACTGGACCACGACCT
CACCCCATCTAGCAATACACGAGTCACTTGCCACCGCCTGGGAACTCGAC
GTCGGTGGCGTGACCGACGTCTTGCGGAGGCGCCAGTCGATCCCGCTCGG
CGCTCGGGTGTACGAGATCCACGAACCGGAAGACTGGGCCGGCTTGGTCG
AGCGGTATCCGGTGCTCCCGGCCCCTCCACACTGGGGTTGCGAACTGCCG
GGGCCGAACGCCGGTCCCTGGAGTTCGGGAACCTCACACCTGCTGCCGGC
GGCGTACTCGACTCGACGGGTCTCGTTGGCGACAGCCCTGGTCGAAGAAT
TCGCCGAACTGCTGCGGACGCCGATCGACCGCGAGGCCCAGGAGTTCTGG
ACGAGCAGGTATGTGCACGAGCGCCGGCCGGCCAACCAGCCCGGTGTCGA
TCTCGACCGCGTCTACTGCTGCGGTGAGTTTCCGACCGACGGCCACTGGA
CCACGACCTCACCCCATCTAGCAATACACGAGTCACTTGCCACCGCCTGG
GAACTCGACGTCGGTGGCGTGACCGACGTCTTGCGGAGGCGCCAGTCGAT
CCCGCTCGGCGCTCGGGTGTACGAGATCCACGAACCGGAAGACTGGGCCG
GCTTGGTCGAGCGGTATCCGGTGCTCCCGGCCCCTCCACACTGGGGTTGC
GAACTGCCGGGGCCGAAC
back to top