mRNA_M-pyrifera_M_contig104050.865.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104050.865.1
Unique NamemRNA_M-pyrifera_M_contig104050.865.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104050.865.1 vs. uniprot
Match: L8GZL6_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZL6_ACACA)

HSP 1 Score: 99.0 bits (245), Expect = 3.260e-21
Identity = 54/156 (34.62%), Postives = 89/156 (57.05%), Query Frame = 1 
Query:    1 DLTAESIGSNMELYFRLKFFSDSEEEAFLYLLRSSYLPFGASLADERVSCSLLTTECLYILVRTPPPKA---GFVIARKAPLAKIRRVVCGFGHQWLRVVLDDASEHLLVTREHEKTHAFADLLMDAVRKRNLV--DPALLVHYNTQLARNTYLEL 453
            D +++++  N++L+ RL FF     E  +Y   S YLP+GA  ++E +   L+TT+ +YIL R   P     GF +  +  L++IRRVV G  +Q  RV +D+    + +++EH +THAF DLL+  +   + V  +P   VHYN++   N   +L
Sbjct:  353 DFSSDTMDVNLQLHLRLTFFRGGAAEQLVYFFTSVYLPYGAKTSEEAIGHLLITTQNMYILQRKRRPTETDPGFALVAEYRLSQIRRVVIGLFYQHFRVEIDEKQAFVFLSKEHARTHAFIDLLLQTILDSDGVGGEPIEAVHYNSETLGNMQTQL 508
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104050.865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
L8GZL6_ACACA3.260e-2134.62Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104050contigM-pyrifera_M_contig104050:167..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size426
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.8982918-UTR-M-pyrifera_M_contig104050:166..1961622815546.8982918-UTR-M-pyrifera_M_contig104050:166..196Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104050 167..196 +
1692277458.1668415-UTR-M-pyrifera_M_contig104050:166..1961692277458.1668415-UTR-M-pyrifera_M_contig104050:166..196Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104050 167..196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.9101684-CDS-M-pyrifera_M_contig104050:196..6221622815546.9101684-CDS-M-pyrifera_M_contig104050:196..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104050 197..622 +
1692277458.1790466-CDS-M-pyrifera_M_contig104050:196..6221692277458.1790466-CDS-M-pyrifera_M_contig104050:196..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104050 197..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104050.865.1prot_M-pyrifera_M_contig104050.865.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104050 197..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104050.865.1

>prot_M-pyrifera_M_contig104050.865.1 ID=prot_M-pyrifera_M_contig104050.865.1|Name=mRNA_M-pyrifera_M_contig104050.865.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MELYFRLKFFSDSEEEAFLYLLRSSYLPFGASLADERVSCSLLTTECLYI
LVRTPPPKAGFVIARKAPLAKIRRVVCGFGHQWLRVVLDDASEHLLVTRE
HEKTHAFADLLMDAVRKRNLVDPALLVHYNTQLARNTYLELL
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mRNA from alignment at M-pyrifera_M_contig104050:167..622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104050.865.1 ID=mRNA_M-pyrifera_M_contig104050.865.1|Name=mRNA_M-pyrifera_M_contig104050.865.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig104050:167..622+ (Macrocystis pyrifera P11B4 male)
GACCTCACGGCCGAGAGCATTGGCAGCAACATGGAGCTCTACTTCCGCCT
CAAGTTCTTCTCTGACAGCGAGGAGGAGGCCTTTCTCTATCTCTTGCGGA
GCAGCTACCTCCCCTTCGGGGCCTCGCTGGCAGACGAGCGCGTCAGCTGC
TCCCTCCTCACCACAGAGTGCCTCTACATCCTCGTTCGCACCCCCCCGCC
CAAGGCAGGCTTCGTCATCGCACGCAAGGCGCCGCTGGCCAAGATCAGGC
GTGTGGTGTGTGGCTTCGGCCACCAGTGGCTGCGTGTGGTGCTGGACGAC
GCCAGCGAGCACCTGCTGGTTACGCGCGAGCACGAGAAGACCCACGCCTT
CGCAGACCTCCTCATGGACGCCGTGCGCAAGCGTAACCTCGTCGACCCCG
CGCTGCTCGTCCACTACAACACCCAGCTCGCACGCAACACCTACCTCGAG
CTGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104050:167..622+

>mRNA_M-pyrifera_M_contig104050.865.1 ID=mRNA_M-pyrifera_M_contig104050.865.1|Name=mRNA_M-pyrifera_M_contig104050.865.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig104050:167..622+ (Macrocystis pyrifera P11B4 male)
ATGGAGCTCTACTTCCGCCTCAAGTTCTTCTCTGACAGCGAGGAGGAGGC
CTTTCTCTATCTCTTGCGGAGCAGCTACCTCCCCTTCGGGGCCTCGCTGG
CAGACGAGCGCGTCAGCTGCTCCCTCCTCACCACAGAGTGCCTCTACATC
CTCGTTCGCACCCCCCCGCCCAAGGCAGGCTTCGTCATCGCACGCAAGGC
GCCGCTGGCCAAGATCAGGCGTGTGGTGTGTGGCTTCGGCCACCAGTGGC
TGCGTGTGGTGCTGGACGACGCCAGCGAGCACCTGCTGGTTACGCGCGAG
CACGAGAAGACCCACGCCTTCGCAGACCTCCTCATGGACGCCGTGCGCAA
GCGTAACCTCGTCGACCCCGCGCTGCTCGTCCACTACAACACCCAGCTCG
CACGCAACACCTACCTCGAGCTGCTTATGGAGCTCTACTTCCGCCTCAAG
TTCTTCTCTGACAGCGAGGAGGAGGCCTTTCTCTATCTCTTGCGGAGCAG
CTACCTCCCCTTCGGGGCCTCGCTGGCAGACGAGCGCGTCAGCTGCTCCC
TCCTCACCACAGAGTGCCTCTACATCCTCGTTCGCACCCCCCCGCCCAAG
GCAGGCTTCGTCATCGCACGCAAGGCGCCGCTGGCCAAGATCAGGCGTGT
GGTGTGTGGCTTCGGCCACCAGTGGCTGCGTGTGGTGCTGGACGACGCCA
GCGAGCACCTGCTGGTTACGCGCGAGCACGAGAAGACCCACGCCTTCGCA
GACCTCCTCATGGACGCCGTGCGCAAGCGTAACCTCGTCGACCCCGCGCT
GCTCGTCCACTACAACACCCAGCTCGCACGCAACACCTACCTCGAGCTGC
TT
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