mRNA_M-pyrifera_M_contig104045.861.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104045.861.1
Unique NamemRNA_M-pyrifera_M_contig104045.861.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104045.861.1 vs. uniprot
Match: A0A2D4TEX3_9GAMM (Uncharacterized protein n=2 Tax=Haliea TaxID=475794 RepID=A0A2D4TEX3_9GAMM)

HSP 1 Score: 318 bits (814), Expect = 1.070e-106
Identity = 168/209 (80.38%), Postives = 188/209 (89.95%), Query Frame = 1 
Query:    1 MKRIREVLIYVSVALLSQMAASQSPGIG----QSSESRRVAGTVAEQQLELDLIKENSIGVGSGEIVFLKGAFMGKLAEGFFQKKNSNYEDALQKTLTALLPLLGDLQGKRFNIDRVINLPAHKKLVRFHQIIEGAKLPTSSIFANNEGEITSVSLYSINPKRAKSDFEERLLDTELSRLFEYYASEYFEGLGAQLAIDEEAKTGPVLR 615
            MKRI EVL+YVS+ALL Q+AASQSPGIG    QSSE R V GTVA QQLELDLI ENSIGVGSGEIVFL+GAFMGKLAEGFFQK++SNYEDALQKTL+ALLPLLGDL G++F++DRVI+LPA KKLVRFHQIIEGA LPTS+IFANNEGEI SVSLYSI+PK AKSDFEE+L DTELSRLF++YAS+YFE LGAQL +DE+  TGPVLR
Sbjct:    1 MKRILEVLMYVSLALLPQVAASQSPGIGLSGAQSSEPRHVTGTVATQQLELDLINENSIGVGSGEIVFLRGAFMGKLAEGFFQKEDSNYEDALQKTLSALLPLLGDLYGRQFSVDRVIDLPAQKKLVRFHQIIEGASLPTSNIFANNEGEIESVSLYSIDPKTAKSDFEEKLPDTELSRLFKFYASKYFESLGAQLVVDEKVATGPVLR 209
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BLAST of mRNA_M-pyrifera_M_contig104045.861.1 vs. uniprot
Match: A0A2D5F990_9GAMM (Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5F990_9GAMM)

HSP 1 Score: 154 bits (388), Expect = 6.350e-43
Identity = 97/211 (45.97%), Postives = 132/211 (62.56%), Query Frame = 1 
Query:    1 MKRIREVLIYVSVALLSQMAASQSPGIG-----QSSESRRVAGTVAEQQLELDLIKENSIGVGSGEIVFLKGAFMGKLAEGFFQKKNSN-YEDALQKTLTALLPLLGDLQGKRFNIDRVINLPAHKKLVRFHQIIEGAKLPTSSIFANNEGEITSVSLYSINPKRAKSDFEERLLDTELSRLFEYYASEYFEGLGAQLAIDEEAKTGPVLR 615
            M R+  VL   +   +   +A Q+ G+G      ++ SR+  G  +   L+L+ IK NS G+GSGE VFL G  +GKL EGFF    SN Y   LQK L +L PLLG+L+G+ F I+RV+ LP HK LVRF+QI+EGAKLP S I A+N  EI SV+ YSI+P++AK + E +L  +EL RLF +YA +Y+   G    I E+  +GP  R
Sbjct:    1 MIRLISVLTLATYIGIGHESAPQTGGLGVVTNPSNTSSRQPHGNNS-HPLDLESIKRNSRGIGSGEQVFLHGEGIGKLPEGFFSDGESNDYNSFLQKVLRSLAPLLGNLEGREFVIERVMRLPNHK-LVRFYQIVEGAKLPQSQIVAHNNNEIQSVTFYSISPEKAKKNTELQLTRSELLRLFTHYALDYYASHGFAADIKEKNISGPNFR 209
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104045.861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D4TEX3_9GAMM1.070e-10680.38Uncharacterized protein n=2 Tax=Haliea TaxID=47579... [more]
A0A2D5F990_9GAMM6.350e-4345.97Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104045contigM-pyrifera_M_contig104045:31..645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size615
Cds size615
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.7210696-CDS-M-pyrifera_M_contig104045:30..6451622815546.7210696-CDS-M-pyrifera_M_contig104045:30..645Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104045 31..645 +
1692277458.0685835-CDS-M-pyrifera_M_contig104045:30..6451692277458.0685835-CDS-M-pyrifera_M_contig104045:30..645Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104045 31..645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104045.861.1prot_M-pyrifera_M_contig104045.861.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104045 31..645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104045.861.1

>prot_M-pyrifera_M_contig104045.861.1 ID=prot_M-pyrifera_M_contig104045.861.1|Name=mRNA_M-pyrifera_M_contig104045.861.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
MKRIREVLIYVSVALLSQMAASQSPGIGQSSESRRVAGTVAEQQLELDLI
KENSIGVGSGEIVFLKGAFMGKLAEGFFQKKNSNYEDALQKTLTALLPLL
GDLQGKRFNIDRVINLPAHKKLVRFHQIIEGAKLPTSSIFANNEGEITSV
SLYSINPKRAKSDFEERLLDTELSRLFEYYASEYFEGLGAQLAIDEEAKT
GPVLR
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mRNA from alignment at M-pyrifera_M_contig104045:31..645+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104045.861.1 ID=mRNA_M-pyrifera_M_contig104045.861.1|Name=mRNA_M-pyrifera_M_contig104045.861.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig104045:31..645+ (Macrocystis pyrifera P11B4 male)
ATGAAGAGAATTCGGGAAGTCCTTATATACGTGAGTGTCGCCTTGCTCTC
TCAAATGGCTGCATCACAGTCTCCGGGCATTGGCCAATCAAGTGAATCTC
GCCGCGTAGCAGGCACTGTGGCAGAACAGCAGCTAGAACTCGACCTCATC
AAGGAGAACTCAATTGGCGTGGGGTCGGGTGAAATCGTGTTTCTGAAAGG
CGCCTTCATGGGCAAACTTGCTGAGGGCTTCTTCCAGAAGAAAAATAGCA
ACTATGAAGACGCGCTACAAAAGACCCTGACTGCCCTCCTGCCCCTATTG
GGGGACTTACAGGGAAAGCGATTTAACATCGACCGAGTGATCAATCTACC
CGCACACAAGAAGCTGGTGAGGTTCCACCAGATAATCGAAGGCGCGAAGC
TACCGACTTCAAGCATATTTGCAAACAATGAGGGCGAAATAACATCGGTA
TCTCTATACTCAATAAACCCGAAGAGAGCCAAGAGCGACTTTGAAGAAAG
ACTCCTAGACACCGAACTCTCAAGGTTATTTGAATATTATGCGTCAGAGT
ATTTCGAGGGTCTTGGAGCTCAACTGGCGATAGATGAAGAGGCGAAGACT
GGCCCTGTCCTTAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104045:31..645+

>mRNA_M-pyrifera_M_contig104045.861.1 ID=mRNA_M-pyrifera_M_contig104045.861.1|Name=mRNA_M-pyrifera_M_contig104045.861.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig104045:31..645+ (Macrocystis pyrifera P11B4 male)
ATGAAGAGAATTCGGGAAGTCCTTATATACGTGAGTGTCGCCTTGCTCTC
TCAAATGGCTGCATCACAGTCTCCGGGCATTGGCCAATCAAGTGAATCTC
GCCGCGTAGCAGGCACTGTGGCAGAACAGCAGCTAGAACTCGACCTCATC
AAGGAGAACTCAATTGGCGTGGGGTCGGGTGAAATCGTGTTTCTGAAAGG
CGCCTTCATGGGCAAACTTGCTGAGGGCTTCTTCCAGAAGAAAAATAGCA
ACTATGAAGACGCGCTACAAAAGACCCTGACTGCCCTCCTGCCCCTATTG
GGGGACTTACAGGGAAAGCGATTTAACATCGACCGAGTGATCAATCTACC
CGCACACAAGAAGCTGGTGAGGTTCCACCAGATAATCGAAGGCGCGAAGC
TACCGACTTCAAGCATATTTGCAAACAATGAGGGCGAAATAACATCGGTA
TCTCTATACTCAATAAACCCGAAGAGAGCCAAGAGCGACTTTGAAGAAAG
ACTCCTAGACACCGAACTCTCAAGGTTATTTGAATATTATGCGTCAGAGT
ATTTCGAGGGTCTTGGAGCTCAACTGGCGATAGATGAAGAGGCGAAGACT
GGCCCTGTCCTTAGAATGAAGAGAATTCGGGAAGTCCTTATATACGTGAG
TGTCGCCTTGCTCTCTCAAATGGCTGCATCACAGTCTCCGGGCATTGGCC
AATCAAGTGAATCTCGCCGCGTAGCAGGCACTGTGGCAGAACAGCAGCTA
GAACTCGACCTCATCAAGGAGAACTCAATTGGCGTGGGGTCGGGTGAAAT
CGTGTTTCTGAAAGGCGCCTTCATGGGCAAACTTGCTGAGGGCTTCTTCC
AGAAGAAAAATAGCAACTATGAAGACGCGCTACAAAAGACCCTGACTGCC
CTCCTGCCCCTATTGGGGGACTTACAGGGAAAGCGATTTAACATCGACCG
AGTGATCAATCTACCCGCACACAAGAAGCTGGTGAGGTTCCACCAGATAA
TCGAAGGCGCGAAGCTACCGACTTCAAGCATATTTGCAAACAATGAGGGC
GAAATAACATCGGTATCTCTATACTCAATAAACCCGAAGAGAGCCAAGAG
CGACTTTGAAGAAAGACTCCTAGACACCGAACTCTCAAGGTTATTTGAAT
ATTATGCGTCAGAGTATTTCGAGGGTCTTGGAGCTCAACTGGCGATAGAT
GAAGAGGCGAAGACTGGCCCTGTCCTTAGA
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